BAC Information

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BAC

Clone NameB6Ng01-117H10
Chromosome2 (Build37)
Map Location 180,187,040 - 180,347,575
singlet/doubletdoublet
Overlap geneSlco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3
Upstream geneCdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283
Downstream geneTcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117H10.bB6Ng01-117H10.g
ACCDH922197DH922198
length1,237506
definitionDH922197|Mus musculus domesticus DNA, BAC clone: B6Ng01-117H10, 5' end.DH922198|Mus musculus domesticus DNA, BAC clone: B6Ng01-117H10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(180,346,311 - 180,347,575)(180,187,040 - 180,187,532)
sequence
gaattccacctacagtaggtatagaaattcctcctatggaaggggtctta
gaaacagcaccctagccccagttgccaaacccaagtccatagataacagt
agtatacagccatgcatgccctactggtcctttcaagagcagctgcctat
cactcagtggacatcgaatagatcggctactgctgtcttggatctctctc
cctgccccctctctgtcatacacactcatttactcattcacacacacaca
cacacacacacacacacacacacacgagagagagagagagagagagagac
agacagacagacagagacagagagacagagagagagacatagatcgagca
ctgctcttgtagagaacctgggtttggttcccagcattgcatcaagtggc
tcacatccatctgtaactctagttccagggactgactgacattccctctg
acatcctttggctcttgatagatatggtacacatgcatccatgtgggcaa
gtttatacataagattaaaataaataaatcttttttaaaaagagaagtaa
atgtgaaagtgaaggcaagagctatccaaagagaaagtcagtaaagcgtc
ctccctgctgggactggggctcagcgcaagcatttccctccactagctta
gagtcctcagagctattggcaaattccctaacccctggaatttcctgcct
agaggctaataaagcacccactgtccctgctgtgtggtgctggtttctgt
ggctccctgtgtctgcacaggtaccctagagcctccaatgattgcatgca
cacatttaaagagtgctttgtccttgccaagtggagatcaagaaagcagt
cacatagcctgtaaagatctgatgtatggtctagacccagaccagacccc
cagactcttccaggggacccaggcattatctataaccattgagaacctga
gtagtcataactccctggatcctgtccctgcagaacaccaatgccactgg
ctactgcagcacatcagcaagactctggaaagtaaatgtttgaaacactg
ggtcattcagtctgagctcacaccaaactgcatgcagccaggactaaagt
ctcaagttaacacttctcccctcaccagttactgaatcttctagcctgca
tgcaggcttggtaaagagcaataagaccctagattctcttcttgccaaga
aacccagaatgccagagatcaggtacctgtcacatag
gaattcaagtttaccctcagctttaaagcaagactggaggcacctgtctc
ggaaagcaaaacaaacctaacaaggagccagaaaaaaaaaaaaagtaaaa
cgtcaagtactaactctattcatttatttattttgctttttgaagacaag
gtttcatactgaattccaggttgcctttgaacttgtggcaaacctcctgc
ctcagactcccaagtgttgggattgtaggtgtgcactaccccaaacagtt
tagaagccttaacttcaaacatttaacagagactccagggcatgtcacag
ctcacagcttggctgccagtgtgacattatttcatcatttcctaggcatg
ggtcaactgtcactaggttgtctcagcccttttataaaccaggaaaggaa
gaactgaaacatctttaaatgatcagtatacatatatatatatatatata
tatatatatatatatatatatatatgtgtgtgtggatatataagaggtgt
gtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_180346311_180347575
seq2: B6Ng01-117H10.b_44_1280 (reverse)

seq1  CTATGTGGACAGGTACCCTTGATTCTTTTCTTGCTCATTCTCTTGGTGTT  50
      |||||| ||||||||||  |||    | ||| |  |||||   |||  ||
seq2  CTATGT-GACAGGTACC--TGA----TCTCTGG--CATTC---TGGGTTT  38

seq1  CTTGGGCAAGAAG-GGATCTAGGGTCCTTACTGCTCTATCACAAGCCCTG  99
      ||| ||||||||| | ||||||||| |||| |||||| |  |||| ||||
seq2  CTT-GGCAAGAAGAGAATCTAGGGT-CTTATTGCTCTTTACCAAG-CCTG  85

seq1  CATGCAGGCCTAGAAGAATCAGTAACTGGGGTGAGGGGAGAAGTGTAAAC  149
      |||||||| |||||||| |||||||||  ||||||||||||||||| |||
seq2  CATGCAGG-CTAGAAGATTCAGTAACT--GGTGAGGGGAGAAGTGTTAAC  132

seq1  TTGAGACTCTAGGTCCTGGGCTGCATGCAGTTTGGTGTGAGCTCAGACCT  199
      |||||||| || ||||| ||||||||||||||||||||||||||||| ||
seq2  TTGAGACTTTA-GTCCT-GGCTGCATGCAGTTTGGTGTGAGCTCAGA-CT  179

seq1  GAATGACCCCAGTGTTTCAAACATGTAACTTTCCAAGAGTCTTTGCTGAT  249
      |||||| ||||||||||||||||| | ||||||| |||||| ||||||||
seq2  GAATGA-CCCAGTGTTTCAAACAT-TTACTTTCC-AGAGTC-TTGCTGAT  225

seq1  GGTGCTGCAGTAGCCAGTGGCATTGGTGTTCTGCAGGGACAGGATCCAGG  299
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GTGCTGCAGTAGCCAGTGGCATTGGTGTTCTGCAGGGACAGGATCCAGG  274

seq1  GAGTTATGACTTACTCAGGTTCTCAATGGTTAATAGATAATGCCTGGGTC  349
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  GAGTTATGAC-TACTCAGGTTCTCAATGGTT-ATAGATAATGCCTGGGTC  322

seq1  CCCTGGAAGGAGTCTGGGGGTCTGGTCTGGGTCTAGACCATACATCAGAT  399
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAA-GAGTCTGGGGGTCTGGTCTGGGTCTAGACCATACATCAGAT  371

seq1  CTTTACAGGCTATGTGACTGCTTTCTTGATCTCCACTTGGCAAGGACAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAGGCTATGTGACTGCTTTCTTGATCTCCACTTGGCAAGGACAAA  421

seq1  GCACTCTTTAAATGTGTGCATGCAATCATTGGAGGCTCTAGGGTACCTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTTTAAATGTGTGCATGCAATCATTGGAGGCTCTAGGGTACCTGT  471

seq1  GCAGACACAGGGAGCCACAGAAACCAGCACCACACAGCAGGGACAGTGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACACAGGGAGCCACAGAAACCAGCACCACACAGCAGGGACAGTGGG  521

seq1  TGCTTTATTAGCCTCTAGGCAGGAAATTCCAGGGGTTAGGGAATTTGCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATTAGCCTCTAGGCAGGAAATTCCAGGGGTTAGGGAATTTGCCA  571

seq1  ATAGCTCTGAGGACTCTAAGCTAGTGGAGGGAAATGCTTGCGCTGAGCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCTGAGGACTCTAAGCTAGTGGAGGGAAATGCTTGCGCTGAGCCC  621

seq1  CAGTCCCAGCAGGGAGGACGCTTTACTGACTTTCTCTTTGGATAGCTCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCAGCAGGGAGGACGCTTTACTGACTTTCTCTTTGGATAGCTCTT  671

seq1  GCCTTCACTTTCACATTTACTTCTCTTTTTAAAAAAGATTTATTTATTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCACTTTCACATTTACTTCTCTTTTTAAAAAAGATTTATTTATTTT  721

seq1  AATCTTATGTATAAACTTGCCCACATGGATGCATGTGTACCATATCTATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTATGTATAAACTTGCCCACATGGATGCATGTGTACCATATCTATC  771

seq1  AAGAGCCAAAGGATGTCAGAGGGAATGTCAGTCAGTCCCTGGAACTAGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCAAAGGATGTCAGAGGGAATGTCAGTCAGTCCCTGGAACTAGAG  821

seq1  TTACAGATGGATGTGAGCCACTTGATGCAATGCTGGGAACCAAACCCAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATGGATGTGAGCCACTTGATGCAATGCTGGGAACCAAACCCAGG  871

seq1  TTCTCTACAAGAGCAGTGCTCGATCTATGTCTCTCTCTCTGTCTCTCTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTACAAGAGCAGTGCTCGATCTATGTCTCTCTCTCTGTCTCTCTGT  921

seq1  CTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCGTGTGTGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCGTGTGTGTG  971

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGAATGAGTAAATGAGTGTGTATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGAATGAGTAAATGAGTGTGTATG  1021

seq1  ACAGAGAGGGGGCAGGGAGAGAGATCCAAGACAGCAGTAGCCGATCTATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGGGGGCAGGGAGAGAGATCCAAGACAGCAGTAGCCGATCTATT  1071

seq1  CGATGTCCACTGAGTGATAGGCAGCTGCTCTTGAAAGGACCAGTAGGGCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGTCCACTGAGTGATAGGCAGCTGCTCTTGAAAGGACCAGTAGGGCA  1121

seq1  TGCATGGCTGTATACTACTGTTATCTATGGACTTGGGTTTGGCAACTGGG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGCTGTATACTACTGTTATCTATGGACTTGGGTTTGGCAACTGGG  1171

seq1  GCTAGGGTGCTGTTTCTAAGACCCCTTCCATAGGAGGAATTTCTATACCT  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGTGCTGTTTCTAAGACCCCTTCCATAGGAGGAATTTCTATACCT  1221

seq1  ACTGTAGGTGGAATTC  1265
      ||||||||||||||||
seq2  ACTGTAGGTGGAATTC  1237

seq1: chr2_180187040_180187532
seq2: B6Ng01-117H10.g_69_574

seq1  GAATTCAAGTTTACCCTCAGCTTTAAAGCAAGACTGGAGGCACCTGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTTACCCTCAGCTTTAAAGCAAGACTGGAGGCACCTGTCTC  50

seq1  GGAAAGCAAAACAAACCTAACAAGGAGCCAGAAAAAAAAAAAAAGTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCAAAACAAACCTAACAAGGAGCCAGAAAAAAAAAAAAAGTAAAA  100

seq1  CGTCAAGTACTAACTCTATTCATTTATTTATTTTGCTTTTTGAAGACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAAGTACTAACTCTATTCATTTATTTATTTTGCTTTTTGAAGACAAG  150

seq1  GTTTCATACTGAATTCCAGGTTGCCTTTGAACTTGTGGCAAACCTCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATACTGAATTCCAGGTTGCCTTTGAACTTGTGGCAAACCTCCTGC  200

seq1  CTCAGACTCCCAAGTGTTGGGATTGTAGGTGTGCACTACCCCAAACAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACTCCCAAGTGTTGGGATTGTAGGTGTGCACTACCCCAAACAGTT  250

seq1  TAGAAGCCTTAACTTCAAACATTTAACAGAGACTCCAGGGCATGTCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCCTTAACTTCAAACATTTAACAGAGACTCCAGGGCATGTCACAG  300

seq1  CTCACAGCTTGGCTGCCAGTGTGACATTATTTCATCATTTCCTAGGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGCTTGGCTGCCAGTGTGACATTATTTCATCATTTCCTAGGCATG  350

seq1  GGTCAACTGTCACTAGGTTGTCTCAGCCCTTTTATAAACCAGGAAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAACTGTCACTAGGTTGTCTCAGCCCTTTTATAAACCAGGAAAGGAA  400

seq1  GAACTGAAACATCTTTAAATGATCAGTATACATATATATATATATATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAAACATCTTTAAATGATCAGTATACATATATATATATATATATA  450

seq1  TATATATATATATATATATATATGTGTGTGTGT-------------GTGT  487
      ||||||||||||||||||||||| |||||||||             ||||
seq2  TATATATATATATATATATATATATGTGTGTGTGGATATATAAGAGGTGT  500

seq1  GTGTGT  493
      ||||||
seq2  GTGTGT  506