BAC Information

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BAC

Clone NameB6Ng01-117K10
Chromosome2 (Build37)
Map Location 80,443,233 - 80,553,694
singlet/doubletdoublet
Overlap geneLOC624223, Dusp19, LOC672381, Nup35
Upstream geneSsfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1
Downstream geneLOC103324, LOC668027, LOC100040624, LOC100040655, LOC100040704
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117K10.bB6Ng01-117K10.g
ACCDH922337DH922338
length5431,140
definitionDH922337|Mus musculus domesticus DNA, BAC clone: B6Ng01-117K10, 5' end.DH922338|Mus musculus domesticus DNA, BAC clone: B6Ng01-117K10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,443,233 - 80,443,781)(80,552,549 - 80,553,694)
sequence
ctactgggttggtgaagattctacatataaagtttttgaggttatcctaa
ttgattcattccataaagctatcagaagaaatcctgacacccaccggatc
accaaacaagtccacaagcacagagagatgcatgggttgacatctgctgg
ccgaaagagccgtgggctaggaaagggccacaagttccaccacactattg
ttggtttccactgtgcggcctggagaaggcgcaatactctccagctccac
tgttaccgctaatacatgtgctatttgtaaaattcatatccaataaacaa
tttaggacagtcaaatggctttaacaaaaataatccacataattaacata
tcattagtgtaaaaaaataagttttaaagctgtctattttctgaagaaag
gtagaacagatgaaaaggaaattgacaattatgctaagcctccttttttt
tttaaatgtgtataaataaattgtatctaggaaaagtagagttctgaatt
ctggcctaaactgcttttctctacatttgggggggggggggat
gaattcagtagctaaggagctgtgatcttttcactgagtcatgttccttt
ctttttcatatttcttgtgtttctgtgatatgatttgtgcatctgttgga
catctcttccagtttggaatgatagtcatattgggcatgtcacatttaaa
gactctatcccaataccacttcacaaattgaaaacaaaataggatagtag
caacaaaagcaaacacttcaagatagagaaatatagctaaagtctattga
agcatcctaatacattaccaatggtcatgaaccagaaaaataggaaaacc
aatgtagaagatgctatgatattagaatcatttgcatgtatatatggatg
tactgtatgagacaacaggaaaatggaggaaaaacaaggttaaatacatg
aaaatgaaaagaaatggaaacacagagaacaactttggacaaaaaagaaa
agagagtaagaaattagaaaaaaaaaatgtaaaataaaagaaacgcacac
gcacaaaatttccagtaataaggatatttgactacaaaattagataaatg
taagaaaggaaagaaaaattaaaagtgagttctttttttaatgaataaga
taaattcaaattaacatttgaaacatagtgcagatgaaaagaagaaagtg
gggaaaacgtgggggacaaaaattaagagtaaaattcagaagattgcata
ataatgaaaaagactaagtaggtgcataaaaggaaataaaaacatatgat
aaagtaaaaataatattttttaaaaggaaaaaaggggggaacaaggggca
aaaaatattgtagctgcttcttttctttctgggtcctaaaaagttggtga
agagggaggctcagctgaagctgaagctgtgggcaatggatgctccaagg
gtttgtgctggtgctgagcctgcgtttaccatgagtgaccagtgagagag
tacagaccagcagagctgtcttcacttagcagtttcttgtctttgcatac
cagggcatttagctttgcggtaggctggaggctcatgttcttagctggga
gaactgtctcaaaatgagttagtagtacaaaaacccaccgccactgagaa
ctgtcgaggaagcctgcctccttgacgaagaacttctagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_80443233_80443781
seq2: B6Ng01-117K10.b_43_591

seq1  GAATTCCTACTGGGTTGGTGAAGATTCTACATATAAAGTTTTTGAGGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACTGGGTTGGTGAAGATTCTACATATAAAGTTTTTGAGGTTA  50

seq1  TCCTAATTGATTCATTCCATAAAGCTATCAGAAGAAATCCTGACACCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATTGATTCATTCCATAAAGCTATCAGAAGAAATCCTGACACCCAC  100

seq1  CGGATCACCAAACAAGTCCACAAGCACAGAGAGATGCATGGGTTGACATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATCACCAAACAAGTCCACAAGCACAGAGAGATGCATGGGTTGACATC  150

seq1  TGCTGGCCGAAAGAGCCGTGGGCTAGGAAAGGGCCACAAGTTCCACCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCCGAAAGAGCCGTGGGCTAGGAAAGGGCCACAAGTTCCACCACA  200

seq1  CTATTGTTGGTTTCCACTGTGCGGCCTGGAGAAGGCGCAATACTCTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTTGGTTTCCACTGTGCGGCCTGGAGAAGGCGCAATACTCTCCAG  250

seq1  CTCCACTGTTACCGCTAATACATGTGCTATTTGTAAAATTCATATCCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTGTTACCGCTAATACATGTGCTATTTGTAAAATTCATATCCAAT  300

seq1  AAACAATTTAGGACAGTCAAATGGCTTTAACAAAAATAATCCACATAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTTAGGACAGTCAAATGGCTTTAACAAAAATAATCCACATAATT  350

seq1  AACATATCATTAGTGTAAAAAAATAAGTTTTAAAGCTGTCTATTTTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATCATTAGTGTAAAAAAATAAGTTTTAAAGCTGTCTATTTTCTGA  400

seq1  AGAAAGGTAGAACAGATGAAAAGGAAATTGACAATTATGCTAAGCCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTAGAACAGATGAAAAGGAAATTGACAATTATGCTAAGCCTCCT  450

seq1  TTTTTTTTTAAATGTGTATAAATAAATTGTATCTAGGAAAAGTAGAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAAATGTGTATAAATAAATTGTATCTAGGAAAAGTAGAGTTC  500

seq1  TGAATTCTGGCCTAAACTGCTTTTCTCTACATTTGGGGGGGGGGGGGAT  549
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTGGCCTAAACTGCTTTTCTCTACATTTGGGGGGGGGGGGGAT  549

seq1: chr2_80552549_80553694
seq2: B6Ng01-117K10.g_69_1208 (reverse)

seq1  CCTAGAAGTTCTTCTGTCATGAAGGCAGGCTTTCCTTCCGAACAGTTCTC  50
      |||||||||||||| |||| | |||||||| |||||  || |||||||||
seq2  CCTAGAAGTTCTTC-GTCAAGGAGGCAGGC-TTCCT--CG-ACAGTTCTC  45

seq1  AGT-GCTGTGGTTTTTTGTACTACTAACTCATTTTGGAGACAGTTCTCCC  99
      ||| || |||| ||||||||||||||||||||||| ||||||||||| ||
seq2  AGTGGCGGTGGGTTTTTGTACTACTAACTCATTTT-GAGACAGTTCT-CC  93

seq1  CAGCT-AGAACATGAGCCTTCCCAGCCTACCGCAAAGCTAAATGCCCTGG  148
      ||||| |||||||||||||  |||||||||||||||||||||||||||||
seq2  CAGCTAAGAACATGAGCCT--CCAGCCTACCGCAAAGCTAAATGCCCTGG  141

seq1  TATGCAAAGACAAGAAACTGCTAAGTGAAGACAGCTCTGCTGGTCTGTAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAAGACAAGAAACTGCTAAGTGAAGACAGCTCTGCTGGTCTGTAC  191

seq1  TCTCTCACTGGTCACTCATGGTTAAACGCAGGCTCAGCACCAGCACAAAC  248
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCTCTCACTGGTCACTCATGG-TAAACGCAGGCTCAGCACCAGCACAAAC  240

seq1  CCTTGGAGCATCCATTGCCCACAGCTTCAGCTTCAGCTGAGCCT-CCTCT  297
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCTTGGAGCATCCATTGCCCACAGCTTCAGCTTCAGCTGAGCCTCCCTCT  290

seq1  TCACCAACTTTTTAGGACCCAGAAAGAAAAGAAGCAGCTACAATATTTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAACTTTTTAGGACCCAGAAAGAAAAGAAGCAGCTACAATATTTTT  340

seq1  TGCCCCTTGTTCCCCCCTTTTTTCCTTTT-AAAAATATTATTTTTACTTT  396
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGCCCCTTGTTCCCCCCTTTTTTCCTTTTAAAAAATATTATTTTTACTTT  390

seq1  ATCATATGTTTTTATTTCCTTTTATGCACCTACTTAGTCTTTTTCATTAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATGTTTTTATTTCCTTTTATGCACCTACTTAGTCTTTTTCATTAT  440

seq1  TATGCAATCTTCTGAATTTTACTCTTAATTTTTGTCCCCCACGTTTTCCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAATCTTCTGAATTTTACTCTTAATTTTTGTCCCCCACGTTTTCCC  490

seq1  CACTTTCTTCTTTTCATCTGCACTATGTTTCAAATGTTAATTTGAATTTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCTTCTTTTCATCTGCACTATGTTTCAAATGTTAATTTGAATTTA  540

seq1  TCTTATTCATTAAAAAAAGAACTCACTTTTAATTTTTCTTTCCTTTCTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCATTAAAAAAAGAACTCACTTTTAATTTTTCTTTCCTTTCTTA  590

seq1  CATTTATCTAATTTTGTAGTCAAATATCCTTATTACTGGAAATTTTGTGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATCTAATTTTGTAGTCAAATATCCTTATTACTGGAAATTTTGTGC  640

seq1  GTGTGCGTTTCTTTTATTTTACATTTTTTTTTTCTAATTTCTTACTCTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCGTTTCTTTTATTTTACATTTTTTTTTTCTAATTTCTTACTCTCT  690

seq1  TTTCTTTTTTGTCCAAAGTTGTTCTCTGTGTTTCCATTTCTTTTCATTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTGTCCAAAGTTGTTCTCTGTGTTTCCATTTCTTTTCATTTT  740

seq1  CATGTATTTAACCTTGTTTTTCCTCCATTTTCCTGTTGTCTCATACAGTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATTTAACCTTGTTTTTCCTCCATTTTCCTGTTGTCTCATACAGTA  790

seq1  CATCCATATATACATGCAAATGATTCTAATATCATAGCATCTTCTACATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATATATACATGCAAATGATTCTAATATCATAGCATCTTCTACATT  840

seq1  GGTTTTCCTATTTTTCTGGTTCATGACCATTGGTAATGTATTAGGATGCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCCTATTTTTCTGGTTCATGACCATTGGTAATGTATTAGGATGCT  890

seq1  TCAATAGACTTTAGCTATATTTCTCTATCTTGAAGTGTTTGCTTTTGTTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGACTTTAGCTATATTTCTCTATCTTGAAGTGTTTGCTTTTGTTG  940

seq1  CTACTATCCTATTTTGTTTTCAATTTGTGAAGTGGTATTGGGATAGAGTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATCCTATTTTGTTTTCAATTTGTGAAGTGGTATTGGGATAGAGTC  990

seq1  TTTAAATGTGACATGCCCAATATGACTATCATTCCAAACTGGAAGAGATG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGTGACATGCCCAATATGACTATCATTCCAAACTGGAAGAGATG  1040

seq1  TCCAACAGATGCACAAATCATATCACAGAAACACAAGAAATATGAAAAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAGATGCACAAATCATATCACAGAAACACAAGAAATATGAAAAAG  1090

seq1  AAAGGAACATGACTCAGTGAAAAGATCACAGCTCCTTAGCTACTGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAACATGACTCAGTGAAAAGATCACAGCTCCTTAGCTACTGAATTC  1140