BAC Information

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BAC

Clone NameB6Ng01-118F16
Chromosome2 (Build37)
Map Location 143,706,544 - 143,842,503
singlet/doubletdoublet
Overlap geneLOC100043534, Dstn, Rrbp1
Upstream geneKif16b, Snrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799
Downstream gene4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118F16.bB6Ng01-118F16.g
ACCDH922858DH922859
length1,0921,125
definitionDH922858|Mus musculus domesticus DNA, BAC clone: B6Ng01-118F16, 5' end.DH922859|Mus musculus domesticus DNA, BAC clone: B6Ng01-118F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,841,405 - 143,842,503)(143,706,544 - 143,707,688)
sequence
gaattctacatcttcatccaaaggcaaataggaagagactagcttccagt
cggctagggagaggatcttaaagcttacaccacacacctactccaaggct
accccttcaaataatggcactccctgggccaaacatattcataccactac
aactggtactcttaggcttccaaattctgcctcagaccctgaacgtcagc
tccacaaaacaatagtgtaatgacagatattggtgcatatacaaaatggt
cctattgtatgacctaatgatgctgtaaccgtcttaagtttgtgtggtac
attctaagctgtttgtggaatgcaatcacccaatgttgggtgtctcagaa
tgtgtggtggagcctaagtaaggcgttgcctgttgtacctccctcaggac
ttcccccaggagccttcatttaacaccatgtgtactgtgctaagtattct
gtcccagaagtgacaccacatgaccctatccctcaggccagaaagctcag
ctcaaagatgactcctatctctccctcacctgggttcaccaagccctgtt
cccatcaccttctaaacacacgaataccaccccatctgaacccttccaag
atctcatgttacttcttagttgaattattttgatgggtcctctcccaacc
cagtgggtccccagcctagttgggtctcggttactcgaagatcatgctga
gagaatgatcgtagatgccgtgcaccgacccttcgttgagtggctaccac
cagaagaacagcctctgttctccccagaggcacagagctccttccagtgt
gcaatccttatgtatatgggctctgcaggcaatcactgctctctgactgt
gccttgggatagtgggcaggttactcaccctctcagagcctcgggtttct
cgtctttaaaatggagagagttataaaaccatttgggtccattctgaagg
tagatgagtttacacatttgtagggtgcttaaattaatgcatagttcatg
gcaagccctaaaaatatgtatattttaccctactttttgaaaattaaaca
gtattatttgttaatttttctgtgtacgggtgtttgcctggc
gaattcacacggtgaaaggaaagatagaattcctgacatacctctatgtg
gggtgatagaccgtgagagaaagcttgataaggtcgagctagggcttgaa
gccctggagacccagaagggacagaagagtttttcctgctccatgcctct
gtcacaaagccacagccctccacagagagaatcatggcctcagtcatgga
ggggcagcgcccacaagtccctccgcatgtagatgaggcatctcaggcca
agccaataggaagtacctgctgtcaggcccaacccacccccaaaccgtat
ataagatcctatccaggccacctcggagcctgtggaggcctgctgggaac
aggacttctaaaagcaagtctgtctggaaggctgtggggcaaggccattt
ttgctggctacaagcgaggtctccggaaccaaagagagcacacggctctt
cttaaaattgaaggcgtttatgctcgagatgaaactgagttctacttaag
caagagatgtgcttatgtgtacaaagcaaaatacaatacagtgattcctg
gaagcaaaccgaacaaaaccagagcgatcttggaaaaagtaactcgggcc
cacggaaacagtgatatggttcgcgccaaattccgaagctaccttcctgc
aaaggccagtggacacagaatccatgtgatgctgtacccatcctggattt
aaactaatggagagtagataaataaaagaaaaaaaatcctatccagaagg
aataaaggtgtgtgagaattactccgagagcagcaagagctgtaagtgcc
tgggaagagaacgctctcccaaggctttcggcactagaagctccctgcac
acctcccctccctgctcatgcctttccttcacttgaaccctcccaccaga
ctgggcctgagatctctgcagatagccttcagtacgcagctaggacctct
acacaggcatgcaacacacacacacatacagtaataaataatttcacaaa
taataattaattaataaaatacacactttctaaattcaatgaaggaacag
gacaaccttcaggagagacgtggcaaaagtcagcagctgaaaagttgatt
agtctccacgtcagcagcagccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143841405_143842503
seq2: B6Ng01-118F16.b_48_1139 (reverse)

seq1  GCCAGGCAAAACACTCGTACACAG-AAAATAAACAAATAAATAACTGTTT  49
      ||||||| |||||| ||||||||| ||||| |||||||||   |||||||
seq2  GCCAGGC-AAACACCCGTACACAGAAAAATTAACAAATAA--TACTGTTT  47

seq1  AATTTTTCAAAAAAGGTAGGGTAAAATATACAATATTTTTAGGGCTTGCC  99
      || ||||||||||  |||||||||||||||| ||||||||||||||||||
seq2  AA-TTTTCAAAAA--GTAGGGTAAAATATAC-ATATTTTTAGGGCTTGCC  93

seq1  ATGAACTATGCATTAATTTAAGCACCCTACAAATGTGTAAACTCATCTAA  149
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGAACTATGCATTAATTTAAGCACCCTACAAATGTGTAAACTCATCT-A  142

seq1  CCTTCAGAATGGA-CCAAATGGTTTTATAACTCTCTCCATTTTAAAGACG  198
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGAATGGACCCAAATGGTTTTATAACTCTCTCCATTTTAAAGACG  192

seq1  AGAAACCCGAGGCTCTGAGAGGGTGAGTAACCTGCCCACTATCCCAAGGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCGAGGCTCTGAGAGGGTGAGTAACCTGCCCACTATCCCAAGGC  242

seq1  ACAGTCAGAGAAGCAGTGATTGCCTGCAGAGCCCATATACATAAGGATTG  298
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGAG-AGCAGTGATTGCCTGCAGAGCCCATATACATAAGGATTG  291

seq1  CACACTGGAAGGAGCTCTGTGCCTCTGGGGAGAACAGAGGCTGTTCTTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGGAAGGAGCTCTGTGCCTCTGGGGAGAACAGAGGCTGTTCTTCT  341

seq1  GGTGGTAGCCACTCAACGAAGGGTCGGTGCACGGCATCTACGATCATTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTAGCCACTCAACGAAGGGTCGGTGCACGGCATCTACGATCATTCT  391

seq1  CTCAGCATGATCTTCGAGTAACCGAGACCCAACTAGGCTGGGGACCCACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATGATCTTCGAGTAACCGAGACCCAACTAGGCTGGGGACCCACT  441

seq1  GGGTTGGGAGAGGACCCATCAAAATAATTCAACTAAGAAGTAACATGAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGGAGAGGACCCATCAAAATAATTCAACTAAGAAGTAACATGAGA  491

seq1  TCTTGGAAGGGTTCAGATGGGGTGGTATTCGTGTGTTTAGAAGGTGATGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAAGGGTTCAGATGGGGTGGTATTCGTGTGTTTAGAAGGTGATGG  541

seq1  GAACAGGGCTTGGTGAACCCAGGTGAGGGAGAGATAGGAGTCATCTTTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGGCTTGGTGAACCCAGGTGAGGGAGAGATAGGAGTCATCTTTGA  591

seq1  GCTGAGCTTTCTGGCCTGAGGGATAGGGTCATGTGGTGTCACTTCTGGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCTTTCTGGCCTGAGGGATAGGGTCATGTGGTGTCACTTCTGGGA  641

seq1  CAGAATACTTAGCACAGTACACATGGTGTTAAATGAAGGCTCCTGGGGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATACTTAGCACAGTACACATGGTGTTAAATGAAGGCTCCTGGGGGA  691

seq1  AGTCCTGAGGGAGGTACAACAGGCAACGCCTTACTTAGGCTCCACCACAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGAGGGAGGTACAACAGGCAACGCCTTACTTAGGCTCCACCACAC  741

seq1  ATTCTGAGACACCCAACATTGGGTGATTGCATTCCACAAACAGCTTAGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGACACCCAACATTGGGTGATTGCATTCCACAAACAGCTTAGAA  791

seq1  TGTACCACACAAACTTAAGACGGTTACAGCATCATTAGGTCATACAATAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCACACAAACTTAAGACGGTTACAGCATCATTAGGTCATACAATAG  841

seq1  GACCATTTTGTATATGCACCAATATCTGTCATTACACTATTGTTTTGTGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTTTGTATATGCACCAATATCTGTCATTACACTATTGTTTTGTGG  891

seq1  AGCTGACGTTCAGGGTCTGAGGCAGAATTTGGAAGCCTAAGAGTACCAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACGTTCAGGGTCTGAGGCAGAATTTGGAAGCCTAAGAGTACCAGT  941

seq1  TGTAGTGGTATGAATATGTTTGGCCCAGGGAGTGCCATTATTTGAAGGGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGGTATGAATATGTTTGGCCCAGGGAGTGCCATTATTTGAAGGGG  991

seq1  TAGCCTTGGAGTAGGTGTGTGGTGTAAGCTTTAAGATCCTCTCCCTAGCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTGGAGTAGGTGTGTGGTGTAAGCTTTAAGATCCTCTCCCTAGCC  1041

seq1  GACTGGAAGCTAGTCTCTTCCTATTTGCCTTTGGATGAAGATGTAGAATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAAGCTAGTCTCTTCCTATTTGCCTTTGGATGAAGATGTAGAATT  1091

seq1  C  1099
      |
seq2  C  1092

seq1: chr2_143706544_143707688
seq2: B6Ng01-118F16.g_69_1193

seq1  GAATTCACACGGTGAAAGGAAAGATAGAATTCCTGACATACCTCTATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACGGTGAAAGGAAAGATAGAATTCCTGACATACCTCTATGTG  50

seq1  GGGTGATAGACCGTGAGAGAAAGCTTGATAAGGTCGAGCTAGGGCTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGATAGACCGTGAGAGAAAGCTTGATAAGGTCGAGCTAGGGCTTGAA  100

seq1  GCCCTGGAGACCCAGAAGGGACAGAAGAGTTTTTCCTGCTCCATGCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGAGACCCAGAAGGGACAGAAGAGTTTTTCCTGCTCCATGCCTCT  150

seq1  GTCACAAAGCCACAGCCCTCCACAGAGAGAATCATGGCCTCAGTCATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAAGCCACAGCCCTCCACAGAGAGAATCATGGCCTCAGTCATGGA  200

seq1  GGGGCAGCGCCCACAAGTCCCTCCGCATGTAGATGAGGCATCTCAGGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGCGCCCACAAGTCCCTCCGCATGTAGATGAGGCATCTCAGGCCA  250

seq1  AGCCAATAGGAAGTACCTGCTGTCAGGCCCAACCCACCCCCAAACCGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATAGGAAGTACCTGCTGTCAGGCCCAACCCACCCCCAAACCGTAT  300

seq1  ATAAGATCCTATCCAGGCCACCTCGGAGCCTGTGGAGGCCTGCTGGGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATCCTATCCAGGCCACCTCGGAGCCTGTGGAGGCCTGCTGGGAAC  350

seq1  AGGACTTCTAAAAGCAAGTCTGTCTGGAAGGCTGTGGGGCAAGGCCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTCTAAAAGCAAGTCTGTCTGGAAGGCTGTGGGGCAAGGCCATTT  400

seq1  TTGCTGGCTACAAGCGAGGTCTCCGGAACCAAAGAGAGCACACGGCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGCTACAAGCGAGGTCTCCGGAACCAAAGAGAGCACACGGCTCTT  450

seq1  CTTAAAATTGAAGGCGTTTATGCTCGAGATGAAACTGAGTTCTACTTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATTGAAGGCGTTTATGCTCGAGATGAAACTGAGTTCTACTTAAG  500

seq1  CAAGAGATGTGCTTATGTGTACAAAGCAAAATACAATACAGTGATTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGATGTGCTTATGTGTACAAAGCAAAATACAATACAGTGATTCCTG  550

seq1  GAAGCAAACCGAACAAAACCAGAGCGATCTTGGAAAAAGTAACTCGGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAACCGAACAAAACCAGAGCGATCTTGGAAAAAGTAACTCGGGCC  600

seq1  CACGGAAACAGTGATATGGTTCGCGCCAAATTCCGAAGCTACCTTCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAAACAGTGATATGGTTCGCGCCAAATTCCGAAGCTACCTTCCTGC  650

seq1  AAAGGCCAGTGGACACAGAATCCATGTGATGCTGTACCCATCCTGGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCAGTGGACACAGAATCCATGTGATGCTGTACCCATCCTGGATTT  700

seq1  AAACTAATGGAGAGTAGATAAATAAAAGAAAAAAAATCCTATCCAGAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATGGAGAGTAGATAAATAAAAGAAAAAAAATCCTATCCAGAAGG  750

seq1  AATAAAGGTGTGTGAGAATTACTCCGAGAGCAGCAAGAGCTGTAAGTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGGTGTGTGAGAATTACTCCGAGAGCAGCAAGAGCTGTAAGTGCC  800

seq1  TGGGAAGAGAACGCTCTCCCAAGGCTTTCGGCACTAGAAGCTCCCTGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGAGAACGCTCTCCCAAGGCTTTCGGCACTAGAAGCTCCCTGCAC  850

seq1  ACCTCCCCTCCCTGCTCATGCCTTTCCTTCACTTGAACCCTCCCACCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCCTCCCTGCTCATGCCTTTCCTTCACTTGAACCCTCCCACCAGA  900

seq1  CTGGGCCTGAGATCTCTGCAGATAGCCTCCAGTACGCAGGCTAAGACCTC  950
      |||||||||||||||||||||||||||| ||||||||| |||| ||||||
seq2  CTGGGCCTGAGATCTCTGCAGATAGCCTTCAGTACGCA-GCTAGGACCTC  949

seq1  TACACAGGCATGCAAACACACACACACATACAAGTAAATAAATAAATTCA  1000
      ||||||||||||| ||||||||||||||||| ||| ||||||||| ||||
seq2  TACACAGGCATGC-AACACACACACACATAC-AGT-AATAAATAATTTCA  996

seq1  CAAATAAATAAATTAAATTAATAAAAATACACAACTTTCTAAAATTTCAA  1050
      ||||| |||||  | ||||||| ||||||||| ||||||||||  |||||
seq2  CAAAT-AATAA--TTAATTAAT-AAAATACAC-ACTTTCTAAA--TTCAA  1039

seq1  ATTGAAAGGAACAAGACAAACATTCAGGAGAGACGTGGGCAAAAGCCAAG  1100
        || |||||||| ||| ||| |||||||||||||| |||||||| | ||
seq2  --TG-AAGGAACAGGAC-AACCTTCAGGAGAGACGT-GGCAAAAGTC-AG  1083

seq1  CAGCTGAGAAGTTTGTATTAGTCTTCAACGTCAGCAGCAGTCTTT  1145
      ||||||| |||||   ||||||| || ||||||||||||| ||||
seq2  CAGCTGAAAAGTT--GATTAGTC-TCCACGTCAGCAGCAGCCTTT  1125