BAC Information

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BAC

Clone NameB6Ng01-119C24
Chromosome2 (Build37)
Map Location 36,696,516 - 36,697,717
singlet/doubletsinglet
Overlap genenone
Upstream geneTtll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3
Downstream geneOlfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119C24.bB6Ng01-119C24.g
ACCDH923469DH923470
length1,1611,182
definitionDH923469|Mus musculus domesticus DNA, BAC clone: B6Ng01-119C24, 5' end.DH923470|Mus musculus domesticus DNA, BAC clone: B6Ng01-119C24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaagacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacacttctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtagtaccggaggatcctgcaatacctctcctaggc
atatatccagaagatgtcccaaccggtaagaagaacacatgctccactat
gttcatagaagccttgtttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaacgtggtgcatttatacaatg
taatattactcagctattaaaaagaatgaatttatgaaattcctaggtaa
atggatggacctggaggctatcatcctgattgaggtaacccaatcacaaa
ggaattcacacaatatgtattcactcataagtggatattagcccagaaac
ttaggatacccaagatatatgatacaacttgccaaatgcatgaaattcaa
gaagaacgaagaccaaagtgtggacactttaccctttcttagaaatggga
acaaaacacccatggaaggagttacagagacaaaatttggagctgtgatg
aaaggatggaccatctagagattgccatatccggggatccatcccataat
cagcttccaaatcctgacaccattgcatatactagcaagattttgctgaa
aggacccagatatagctctctcttgtgagactatgccggggcctagcaaa
cacagtagtggatgatcacagtcagctattggatgggtcacacggcccca
tggagagctagagaaatcacccaaggagctaaaggaactgcacctatagg
tggacacatatgactaccagtacccgggagctctttagctgcatatgtat
caaaagatggctcgtccgcatactgcagagaggacatgggactgccaact
tttatgcccagtacaggggatgccaggtcaaaaagggggagtggtgtggg
ttagggaattg
gaattctgcagagttacaccatacaacaagcctcacataagagggtgggt
gccacccttagggtgagaaacagctgggaactgagaaggagacaggctta
tataggctttcttaggaatagagttttccagagtagagatttccagtaat
gagattggtgagatttcaagccaagcccagaaattggtgggatttttgtg
cctaatttagagcaatttcacaatccttttaggacaggctgttggttaaa
gggaatggtcttttgaatgatagatgtccatatgtaaaagatataatgaa
tatgtgtagatacaaagaagtagagggagaagagaccaagtttaggtata
aaagattttcagatcatttgtttgtgcagtggcagaaagttgccaccatt
gaaaattgagaatgtcagtcttgtaactgtaaagaggccaagctgtttat
aataatggagtaaggctttaataagatcctagttcatagaagaagatagg
aagagtcacagaaattaatgcagctcctaagaagagaaggcaagcaaaga
ggaagggcttcaacagagaaagagtagcaagtgtcttaacttcagagttg
cctacatggtggagccctggaaggcttaacaggatggagaaaccttacca
agtaggtgaagagagacaaatagtgcagctggagggaagaagtaactgaa
gaaatagactctagaatttggaaccaaatatggatggtggcagaagtcag
cagaaacaaacattcatacacttcttgatagagtcaaggccctttcagct
ggccataccaacttcccagactcccaaagcctgagaacctccaggtctct
gcttcaaatgtggtcaggtgggtcattcggcccaggtatgtccaaagcct
tgcaaccattctgatcatgaccaaggtgccatcaagagggacattaaaac
attcattgctcccatataccttgtaccatgagatcagactcagactccct
ctagcaacactcaaagactagtagcattacatattaagggaatctaactt
ctttcttctagatctagcaccacttttcattccaatgggattgggaccac
ctctctttctgttatttcatgtctgagaaatagggcaagccttacctgaa
cttaccatgctaccttatctggttattaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_36696516_36697717
seq2: B6Ng01-119C24.g_67_1248

seq1  GAATTCTGCAGAGTTACACCATACAACAAGCCTCACATAAGAGGGTGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGAGTTACACCATACAACAAGCCTCACATAAGAGGGTGGGT  50

seq1  GCCACCCTTAGGGTGAGAAACAGCTGGGAACTGAGAAGGAGACAGGCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCTTAGGGTGAGAAACAGCTGGGAACTGAGAAGGAGACAGGCTTA  100

seq1  TATAGGCTTTCTTAGGAATAGAGTTTTCCAGAGTAGAGATTTCCAGTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCTTTCTTAGGAATAGAGTTTTCCAGAGTAGAGATTTCCAGTAAT  150

seq1  GAGATTGGTGAGATTTCAAGCCAAGCCCAGAAATTGGTGGGATTTTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGGTGAGATTTCAAGCCAAGCCCAGAAATTGGTGGGATTTTTGTG  200

seq1  CCTAATTTAGAGCAATTTCACAATCCTTTTAGGACAGGCTGTTGGTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTTAGAGCAATTTCACAATCCTTTTAGGACAGGCTGTTGGTTAAA  250

seq1  GGGAATGGTCTTTTGAATGATAGATGTCCATATGTAAAAGATATAATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGGTCTTTTGAATGATAGATGTCCATATGTAAAAGATATAATGAA  300

seq1  TATGTGTAGATACAAAGAAGTAGAGGGAGAAGAGACCAAGTTTAGGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTAGATACAAAGAAGTAGAGGGAGAAGAGACCAAGTTTAGGTATA  350

seq1  AAAGATTTTCAGATCATTTGTTTGTGCAGTGGCAGAAAGTTGCCACCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTTCAGATCATTTGTTTGTGCAGTGGCAGAAAGTTGCCACCATT  400

seq1  GAAAATTGAGAATGTCAGTCTTGTAACTGTAAAGAGGCCAAGCTGTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGAGAATGTCAGTCTTGTAACTGTAAAGAGGCCAAGCTGTTTAT  450

seq1  AATAATGGAGTAAGGCTTTAATAAGATCCTAGTTCATAGAAGAAGATAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGGAGTAAGGCTTTAATAAGATCCTAGTTCATAGAAGAAGATAGG  500

seq1  AAGAGTCACAGAAATTAATGCAGCTCCTAAGAAGAGAAGGCAAGCAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCACAGAAATTAATGCAGCTCCTAAGAAGAGAAGGCAAGCAAAGA  550

seq1  GGAAGGGCTTCAACAGAGAAAGAGTAGCAAGTGTCTTAACTTCAGAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGCTTCAACAGAGAAAGAGTAGCAAGTGTCTTAACTTCAGAGTTG  600

seq1  CCTACATGGTGGAGCCCTGGAAGGCTTAACAGGATGGAGAAACCTTACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATGGTGGAGCCCTGGAAGGCTTAACAGGATGGAGAAACCTTACCA  650

seq1  AGTAGGTGAAGAGAGACAAATAGTGCAGCTGGAGGGAAGAAGTAACTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTGAAGAGAGACAAATAGTGCAGCTGGAGGGAAGAAGTAACTGAA  700

seq1  GAAATAGACTCTAGAATTTGGAACCAAATATGGATGGTGGCAGAAGTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGACTCTAGAATTTGGAACCAAATATGGATGGTGGCAGAAGTCAG  750

seq1  CAGAAACAAACATTCATACACTTCTTGATAGAGTCAAGGCCCTTTCAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACAAACATTCATACACTTCTTGATAGAGTCAAGGCCCTTTCAGCT  800

seq1  GGCCATACCAACTTCCCAGACTCCCAAAGCCTGAGAACCTCCAGGTCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATACCAACTTCCCAGACTCCCAAAGCCTGAGAACCTCCAGGTCTCT  850

seq1  GCTTCAAATGTGGTCAGGTGGGTCATTCGGCCCAGGTATGTCCAAGGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCTTCAAATGTGGTCAGGTGGGTCATTCGGCCCAGGTATGTCCAAAGCCT  900

seq1  TGCAAACCATTCTGATCATGACCAAGGTGCCATCAAGAGGGACATTAAAA  950
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGC-AACCATTCTGATCATGACCAAGGTGCCATCAAGAGGGACATTAAAA  949

seq1  CATTCATTGCTCCCATATACCTTGTACCATGGAGAATCAGACTCAGACTC  1000
      |||||||||||||||||||||||||||||| ||| |||||||||||||| 
seq2  CATTCATTGCTCCCATATACCTTGTACCAT-GAG-ATCAGACTCAGACT-  996

seq1  CCCTCTAGCCAACACTCAAAGACCTAGGTAGCCATTACATTATTAAGGGA  1050
      |||||||| ||||||||||||| ||| |||| ||||||| ||||||||||
seq2  CCCTCTAG-CAACACTCAAAGA-CTA-GTAG-CATTACA-TATTAAGGGA  1041

seq1  ATCTAACTCCTTTCTTCTAGATACTAGCACCACTTTTCAATCCCAATGGA  1100
      |||||||| ||||||||||||| |||||||||||||||| ||| |  |||
seq2  ATCTAACTTCTTTCTTCTAGAT-CTAGCACCACTTTTCATTCCAATGGGA  1090

seq1  TTTTGGGGGACCAACCTCTCCTTCCTGTTATTCTATGGTCTGAG-AATAG  1149
      ||    |||||| |||||| ||| ||||||||  || ||||||| |||||
seq2  TT----GGGACC-ACCTCT-CTTTCTGTTATTTCAT-GTCTGAGAAATAG  1133

seq1  GCACAGGCTTACCTG-ACTTACCAAATGCTACCTCTTATCTGTGTATTTA  1198
      |   || |||||||| |||||||  |||||||  |||||||| ||  |||
seq2  GGCAAGCCTTACCTGAACTTACC--ATGCTAC--CTTATCTG-GTTATTA  1178

seq1  ATGG  1202
      ||||
seq2  ATGG  1182