BAC Information

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BAC

Clone NameB6Ng01-120H21
Chromosome2 (Build37)
Map Location 172,993,585 - 173,104,137
singlet/doubletdoublet
Overlap geneZbp1, Tmepai
Upstream geneMc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1
Downstream gene1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120H21.bB6Ng01-120H21.g
ACCDH924423DH924424
length715113
definitionDH924423|Mus musculus domesticus DNA, BAC clone: B6Ng01-120H21, 5' end.DH924424|Mus musculus domesticus DNA, BAC clone: B6Ng01-120H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,993,585 - 172,994,297)(173,104,025 - 173,104,137)
sequence
gaattctaagatgttgatgcatggaacacagcctctgggtttggggtgca
atggagaatcaatggaggagaagctgcatcagtggtggcccactggatgg
attgaggccttaaggacaggagaactgtactgtgcccaaccttacactgg
ggaagttggtgaaaagccacccatatggctgacctaagctgtattctgtt
tgttagggagttaggtttgtgggggtgaggtgtccagagtagccctcttc
cctggctgctcttctcaagttggagagatgaggtctgtagtgactgtgca
ttcaggcccagaagtctggctttcctctcattacatcaaggctcatgtcc
ccagctctaacctccagggaacccgggcagccggaagtcagaagccagct
gctatcagcataactagtggcttggtggccaagccaagtccccatgatca
atttgtaatggccattttggaacaaagagatggagggaaacagacacttc
ccagccctggcccttgccagggacagagtgggccttttgatggcttcaca
cataagtgccggcctgctgttaggcagaactttccagcacccaacaagtt
ccaagttaatttccagggaggaaattagatgagaactgggcttttaaaac
acagagaatcttgtgtttaaaaacttggttgccagggaaactctttctcc
agcgatagctttggc
ctttgctaaggtcccagactctcacagtttgttgatagaatagcagaacg
gattgctggaagaagactgtagccatagcaatctctattggccccatggg
ggtggggggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_172993585_172994297
seq2: B6Ng01-120H21.b_47_761

seq1  GAATTCTAAGATGTTGATGCATGGAACACAGCCTCTGGGTTTGGGGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGATGTTGATGCATGGAACACAGCCTCTGGGTTTGGGGTGCA  50

seq1  ATGGAGAATCAATGGAGGAGAAGCTGCATCAGTGGTGGCCCACTGGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAATCAATGGAGGAGAAGCTGCATCAGTGGTGGCCCACTGGATGG  100

seq1  ATTGAGGCCTTAAGGACAGGAGAACTGTACTGTGCCCAACCTTACACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGCCTTAAGGACAGGAGAACTGTACTGTGCCCAACCTTACACTGG  150

seq1  GGAAGTTGGTGAAAAGCCACCCATATGGCTGACCTAAGCTGTATTCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTGGTGAAAAGCCACCCATATGGCTGACCTAAGCTGTATTCTGTT  200

seq1  TGTTAGGGAGTTAGGTTTGTGGGGGTGAGGTGTCCAGAGTAGCCCTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGGAGTTAGGTTTGTGGGGGTGAGGTGTCCAGAGTAGCCCTCTTC  250

seq1  CCTGGCTGCTCTTCTCAAGTTGGAGAGATGAGGTCTGTAGTGACTGTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGCTCTTCTCAAGTTGGAGAGATGAGGTCTGTAGTGACTGTGCA  300

seq1  TTCAGGCCCAGAAGTCTGGCTTTCCTCTCATTACATCAAGGCTCATGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCCCAGAAGTCTGGCTTTCCTCTCATTACATCAAGGCTCATGTCC  350

seq1  CCAGCTCTAACCTCCAGGGAACCCGGGCAGCCGGAAGTCAGAAGCCAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCTAACCTCCAGGGAACCCGGGCAGCCGGAAGTCAGAAGCCAGCT  400

seq1  GCTATCAGCATAACTAGTGGCTTGGTGGCCAAGCCAAGTCCCCATGATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCAGCATAACTAGTGGCTTGGTGGCCAAGCCAAGTCCCCATGATCA  450

seq1  ATTTGTAATGGCCATTTTGGAACAAAGAGATGGAGGGAAACAGACACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAATGGCCATTTTGGAACAAAGAGATGGAGGGAAACAGACACTTC  500

seq1  CCAGCCCTGGCCCTTGCCAGGGACAGAGTGGGCC-TTTGATGGCTTCACA  549
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCAGCCCTGGCCCTTGCCAGGGACAGAGTGGGCCTTTTGATGGCTTCACA  550

seq1  CATAAGTGCCGGCCTGCTGTTAGGCAGAACTTTCCAGCACCCAACAAGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTGCCGGCCTGCTGTTAGGCAGAACTTTCCAGCACCCAACAAGTT  600

seq1  CCAAGTTAATTTCCAGGGAGGAAATTAGATGAGAACT-GGCTTTTAAAAC  648
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCAAGTTAATTTCCAGGGAGGAAATTAGATGAGAACTGGGCTTTTAAAAC  650

seq1  ACAGAGAATCTTGTGTTTAAAAACTTGGTTGCCAGGGAAACTCTTTCTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAATCTTGTGTTTAAAAACTTGGTTGCCAGGGAAACTCTTTCTCC  700

seq1  AGCGATAGCTTTGCC  713
      ||||||||||||| |
seq2  AGCGATAGCTTTGGC  715

seq1: chr2_173104025_173104137
seq2: B6Ng01-120H21.g_72_184 (reverse)

seq1  TCCCCCCCCCACCCCCATGGGGCCAATAGAGATTGCTATGGCTACAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCCCACCCCCATGGGGCCAATAGAGATTGCTATGGCTACAGTCT  50

seq1  TCTTCCAGCAATCCGTTCTGCTATTCTATCAACAAACTGTGAGAGTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGCAATCCGTTCTGCTATTCTATCAACAAACTGTGAGAGTCTGG  100

seq1  GACCTTAGCAAAG  113
      |||||||||||||
seq2  GACCTTAGCAAAG  113