BAC Information

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BAC

Clone NameB6Ng01-121D10
Chromosome2 (Build37)
Map Location 172,971,229 - 173,129,247
singlet/doubletdoublet
Overlap genePck1, Zbp1, Tmepai
Upstream geneMc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800
Downstream gene1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121D10.bB6Ng01-121D10.g
ACCDH924953DH924954
length1,1541,102
definitionDH924953|Mus musculus domesticus DNA, BAC clone: B6Ng01-121D10, 5' end.DH924954|Mus musculus domesticus DNA, BAC clone: B6Ng01-121D10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,971,229 - 172,972,399)(173,128,143 - 173,129,247)
sequence
gaattccagcggtggagagagcttgtcctcagaaggctctaacggctgaa
tgtttgcacatctcttgtgcgtcttctgagtccactcttgtagcaaaatt
gacacctcattcctgagccccaggtgaggtgttttcctcttagatcagcg
ttttcatttctttgttctagaatgcatgcaagcaggcctggtggcttaaa
tgaggagcagcatttgtggtcaggctgactccacatggtggaaagggagc
tgatgcctgccagctgttctctgacttccacaggcacggaacaaaggagc
caccacactctgtgggaaagctgtggcataaccctggtaggtcagagtct
gccagctggacaccacaatctcatggtgtcccaggccatgtggaggaaca
ctgaggggcgtcctcagtggagatgggcagacattggagaccttcctgta
ccccaaagtaggctttggatccctgttgttacgctgccccaacttttccc
aacgttttctagaaagggactggactacaaggccggatctttgttttctt
gttattgcccccccccaccccccaagacaggatttcactttgtagccctg
gctgtcctggaactctccctgtagaccaggctgtcctcaaaactcacaga
gatctgcttgcctctgcttcctgagtgctgggatcgaaggtgtgttccac
cactgccctcccccatttttttgtttttagggatgaaattctgagctgga
gagatggacagtggttaagagcattgactgctcttctagaggacctgggt
tcaattcccagcacccatatggccggtcacaactgtctgcaactccagga
tctaacaccctcacagagatgtacatgcaggcaaaacatcagtaagccta
aaattaaaaaatgaattatttaataaaggagtgaaattcacacaacacga
atgaaccatttaaagatgcacagtttagtgcttgggtacatcatgtctaa
ccacccctctcctagtccagacagctagagggaccaagaagagatgttag
acctttcatcaccatcattcattgaagtctccctcccctcaagcttgcag
aagaaaaactaaaattaccctgacaaacatcattgggtggatgaccaatc
gccc
gaattccacctgcattacatttttaaacatgggcactggaaatgtttgaa
tgaaaatgtatctagggccattttatagacgaagacactgaaggcacaga
gagtggatcaggacaggaggcagctccagggatcaccacagttacacttt
gcagttcctaggcctgtgcggagagcttccaattgctggtcgtggtgggg
tgcattggaaccttgcctctctggtggagcctgcacagctggagttcggg
ccccacccctttcatacagccccgcccctttctcacagtcccacccctct
ccccgaccccactccacctgcagcctctggcccaggatcctgtctctgaa
aaggggactctctgctgggggcgtttgtacttttccttgcctttcgattt
acctcaactgctctttgtatgttctagaacactccatccactttctagta
gattctgcattctttccttgggcaaagcagtctaattaggaagattctgc
aataggtgggaatattattaaggcacttagaggttcttaacaccttccat
gagcacactgtcgcctgtcgcgcctaatcgccttaccgccattagagttg
cattagcagccagaccgagattttgcactgtgaaagatcagtacgttgag
aaaactcatagactacagagctgagagtcacagctacagagtcagctcta
ctctcactcttcagacagactctagtgtcctcgatcccctcacactgccg
ttttcacattcccaagcctgacttttcagtgggtttctagaacactggcc
tgagtgtctggacttgtgccaggtagatgtggttctcccatttgcatgct
gggtaatggtagggcagtgatgtcatcattggtttgcagacagtggcatg
gaggtagatgcacaacacataatgatgagagggacaggaagagatcttgt
ctgcttggacagagcaaaagccattcaaggatatggtcttctcaaggttc
cctcaagacatgggttgatgtaaggaacagcctatgaagtttagtgtacc
tgttaacctcacgatctttaatcctttggaaacaagcctctgcttatgcc
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_172971229_172972399
seq2: B6Ng01-121D10.b_48_1201

seq1  GAATTCCAGCGGTGGAGAGAGCTTGTCCTCAGAAGGCTCTAACGGCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCGGTGGAGAGAGCTTGTCCTCAGAAGGCTCTAACGGCTGAA  50

seq1  TGTTTGCACATCTCTTGTGCGTCTTCTGAGTCCACTCTTGTAGCAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCACATCTCTTGTGCGTCTTCTGAGTCCACTCTTGTAGCAAAATT  100

seq1  GACACCTCATTCCTGAGCCCCAGGTGAGGTGTTTTCCTCTTAGATCAGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTCATTCCTGAGCCCCAGGTGAGGTGTTTTCCTCTTAGATCAGCG  150

seq1  TTTTCATTTCTTTGTTCTAGAATGCATGCAAGCAGGCCTGGTGGCTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTCTTTGTTCTAGAATGCATGCAAGCAGGCCTGGTGGCTTAAA  200

seq1  TGAGGAGCAGCATTTGTGGTCAGGCTGACTCCACATGGTGGAAAGGGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGCAGCATTTGTGGTCAGGCTGACTCCACATGGTGGAAAGGGAGC  250

seq1  TGATGCCTGCCAGCTGTTCTCTGACTTCCACAGGCACGGAACAAAGGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCTGCCAGCTGTTCTCTGACTTCCACAGGCACGGAACAAAGGAGC  300

seq1  CACCACACTCTGTGGGAAAGCTGTGGCATAACCCTGGTAGGTCAGAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACACTCTGTGGGAAAGCTGTGGCATAACCCTGGTAGGTCAGAGTCT  350

seq1  GCCAGCTGGACACCACAATCTCATGGTGTCCCAGGCCATGTGGAGGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTGGACACCACAATCTCATGGTGTCCCAGGCCATGTGGAGGAACA  400

seq1  CTGAGGGGCGTCCTCAGTGGAGATGGGCAGACATTGGAGACCTTCCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGGCGTCCTCAGTGGAGATGGGCAGACATTGGAGACCTTCCTGTA  450

seq1  CCCCAAAGTAGGCTTTGGATCCCTGTTGTTACGCTGCCCCAACTTTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGTAGGCTTTGGATCCCTGTTGTTACGCTGCCCCAACTTTTCCC  500

seq1  AACGTTTTCTAGAAAGGGACTGGACTACAAGGCCGGATCTTTGTTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTTTCTAGAAAGGGACTGGACTACAAGGCCGGATCTTTGTTTTCTT  550

seq1  GTTATTGCCCCCCCCCACCCCCCAAGACAGGATTTCACTTTGTAGCCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGCCCCCCCCCACCCCCCAAGACAGGATTTCACTTTGTAGCCCTG  600

seq1  GCTGTCCTGGAACTCTCCCTGTAGACCAGGCTGTCCTCAAAACTCACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGAACTCTCCCTGTAGACCAGGCTGTCCTCAAAACTCACAGA  650

seq1  GATCTGCTTGCCTCTGCTTCCTGAGTGCTGGGATCGAAGGTGTGTTCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCTTGCCTCTGCTTCCTGAGTGCTGGGATCGAAGGTGTGTTCCAC  700

seq1  CACTGCCCTCCCCCATTTTTTTGTTTTTAGGGATGAAATTCTGAGCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCCTCCCCCATTTTTTTGTTTTTAGGGATGAAATTCTGAGCTGGA  750

seq1  GAGATGGACAGTGGTTAAGAGCATTGACTGCTCTTCTAGAGGACCTGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGACAGTGGTTAAGAGCATTGACTGCTCTTCTAGAGGACCTGGGT  800

seq1  TCAATTCCCAGCACCCATATGGCCGGTCACAACTGTCTGCAACTCCAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCCCAGCACCCATATGGCCGGTCACAACTGTCTGCAACTCCAGGA  850

seq1  TCTAACACCCTCACAGAGATGTACATGCAGGCAAAACATCAGTAAGCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACACCCTCACAGAGATGTACATGCAGGCAAAACATCAGTAAGCCTA  900

seq1  AAATTAAAAAATGAATTATTTAATAAAGGAGTGAAATTCACACAACACGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAAATGAATTATTTAATAAAGGAGTGAAATTCACACAACACGA  950

seq1  ATGAACCATTTAAAGATGCACAGTTTAGTGGCTTGGGTACATCATGTCTA  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGAACCATTTAAAGATGCACAGTTTAGT-GCTTGGGTACATCATGTCTA  999

seq1  ACCACCCCTCTTCCTAGTTCCAGGACAGCTAGAGGGGACCAAGAAGAGAT  1050
      |||||||||| |||||| |||| |||||||||| ||||||||||||||||
seq2  ACCACCCCTC-TCCTAG-TCCA-GACAGCTAGA-GGGACCAAGAAGAGAT  1045

seq1  GTTAAGGACCTTTCAATTCACCATTCATTCAATTGAAAGTCTCC--TCCC  1098
      ||||  |||||||||  |||||| |||||| |||| ||||||||   |||
seq2  GTTA--GACCTTTCA--TCACCA-TCATTC-ATTG-AAGTCTCCCTCCCC  1088

seq1  TCCAGGCTGCAGAGAGAACAACTAAATATTTACCCCTGACAAACATCATT  1148
      || ||  |||||| |||| ||||||| |||   |||||||||||||||||
seq2  TCAAGCTTGCAGA-AGAAAAACTAAA-ATT--ACCCTGACAAACATCATT  1134

seq1  GGGGTGGATGACCCAAATCGCCC  1171
       ||||||||||||  ||||||||
seq2  -GGGTGGATGACC--AATCGCCC  1154

seq1: chr2_173128143_173129247
seq2: B6Ng01-121D10.g_66_1167 (reverse)

seq1  GAGGCATAAGCAGAGGCCTGTCTCCCAAGTGATTCTAGGTTCTGTGAAGT  50
      ||||||||||||||||| ||| ||| ||| ||||  || |   |||| ||
seq2  GAGGCATAAGCAGAGGCTTGTTTCCAAAG-GATTAAAGAT--CGTGAGGT  47

seq1  TAACAGTTAACACT-AACTCTATAGCCTGTTTCCTTACTACACACCATGT  99
      |||||| | ||||| ||||  |||| ||| ||||||||  ||  ||||||
seq2  TAACAGGT-ACACTAAACTTCATAGGCTG-TTCCTTACATCAACCCATGT  95

seq1  CTTGAGGGAACCTTGAGAAGACCATATCCCTGGAATGGCTTCTGCTCTGG  149
      ||||||||||||||||||||||||||| ||| ||||||||| |||||| |
seq2  CTTGAGGGAACCTTGAGAAGACCATAT-CCTTGAATGGCTTTTGCTCT-G  143

seq1  TCCAAGCAGACAGGATCTCTTCCTGTCCCTCTCATC-TTCTGTGTTGTGC  198
      |||||||||||| ||||||||||||||||||||||| || ||||||||||
seq2  TCCAAGCAGACAAGATCTCTTCCTGTCCCTCTCATCATTATGTGTTGTGC  193

seq1  ATCTACCTCCATGCCACTGTCTGCAAACC-ATGATGACATCACTGCCCTA  247
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATCTACCTCCATGCCACTGTCTGCAAACCAATGATGACATCACTGCCCTA  243

seq1  CCATTACCCAGCATGCAAATGGGAGAACCACATCTACCTGGCACAAGTCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACCCAGCATGCAAATGGGAGAACCACATCTACCTGGCACAAGTCC  293

seq1  AGACACTCAGGCCAGTGTTCTAGAAACCCACTGAAAAGTCAGGCTTGGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTCAGGCCAGTGTTCTAGAAACCCACTGAAAAGTCAGGCTTGGGA  343

seq1  ATGTG-AAACGGCAGTGTGAGGGGATCGAGGACACTAGAGTCTGTCTGAA  396
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAAACGGCAGTGTGAGGGGATCGAGGACACTAGAGTCTGTCTGAA  393

seq1  GAGTGAGAGTAGAGCTGACTCTGTAGCTGTGACTCTCAGCTCTGTAGTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGAGTAGAGCTGACTCTGTAGCTGTGACTCTCAGCTCTGTAGTCT  443

seq1  ATGAGTTTTCTCAACGTACTGATCTTTCACAGTGCAAAATCTCGGTCTGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTTTCTCAACGTACTGATCTTTCACAGTGCAAAATCTCGGTCTGG  493

seq1  CTGCTAATGCAACTCTAATGGCGGTAAGGCGATTAGGCGCGACAGGCGAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAATGCAACTCTAATGGCGGTAAGGCGATTAGGCGCGACAGGCGAC  543

seq1  AGTGTGCTCATGGAAGGTGTTAAGAACCTCTAAGTGCCTTAATAATATTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCTCATGGAAGGTGTTAAGAACCTCTAAGTGCCTTAATAATATTC  593

seq1  CCACCTATTGCAGAATCTTCCTAATTAGACTGCTTTGCCCAAGGAAAGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTATTGCAGAATCTTCCTAATTAGACTGCTTTGCCCAAGGAAAGAA  643

seq1  TGCAGAATCTACTAGAAAGTGGATGGAGTGTTCTAGAACATACAAAGAGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAATCTACTAGAAAGTGGATGGAGTGTTCTAGAACATACAAAGAGC  693

seq1  AGTTGAGGTAAATCGAAAGGCAAGGAAAAGTACAAACGCCCCCAGCAGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGGTAAATCGAAAGGCAAGGAAAAGTACAAACGCCCCCAGCAGAG  743

seq1  AGTCCCCTTTTCAGAGACAGGATCCTGGGCCAGAGGCTGCAGGTGGAGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCTTTTCAGAGACAGGATCCTGGGCCAGAGGCTGCAGGTGGAGTG  793

seq1  GGGTCGGGGAGAGGGGTGGGACTGTGAGAAAGGGGCGGGGCTGTATGAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCGGGGAGAGGGGTGGGACTGTGAGAAAGGGGCGGGGCTGTATGAAA  843

seq1  GGGGTGGGGCCCGAACTCCAGCTGTGCAGGCTCCACCAGAGAGGCAAGGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGGCCCGAACTCCAGCTGTGCAGGCTCCACCAGAGAGGCAAGGT  893

seq1  TCCAATGCACCCCACCACGACCAGCAATTGGAAGCTCTCCGCACAGGCCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGCACCCCACCACGACCAGCAATTGGAAGCTCTCCGCACAGGCCT  943

seq1  AGGAACTGCAAAGTGTAACTGTGGTGATCCCTGGAGCTGCCTCCTGTCCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGCAAAGTGTAACTGTGGTGATCCCTGGAGCTGCCTCCTGTCCT  993

seq1  GATCCACTCTCTGTGCCTTCAGTGTCTTCGTCTATAAAATGGCCCTAGAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACTCTCTGTGCCTTCAGTGTCTTCGTCTATAAAATGGCCCTAGAT  1043

seq1  ACATTTTCATTCAAACATTTCCAGTGCCCATGTTTAAAAATGTAATGCAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCATTCAAACATTTCCAGTGCCCATGTTTAAAAATGTAATGCAG  1093

seq1  GTGGAATTC  1105
      |||||||||
seq2  GTGGAATTC  1102