BAC Information

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BAC

Clone NameB6Ng01-121G03
Chromosome2 (Build37)
Map Location 143,269,121 - 143,398,368
singlet/doubletdoublet
Overlap geneLOC668915, LOC668916, Pcsk2
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121G03.bB6Ng01-121G03.g
ACCDH925080DH925081
length1,2161,112
definitionDH925080|Mus musculus domesticus DNA, BAC clone: B6Ng01-121G03, 5' end.DH925081|Mus musculus domesticus DNA, BAC clone: B6Ng01-121G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,269,121 - 143,270,335)(143,397,226 - 143,398,368)
sequence
gaattcattcaaccatgcacaaatattcatgaaaaggtgtatgaatggta
ggggcaaagattaacaaggtaaaatagtaaatgaatataaaatactatat
attgtacataaactataaaataattttaaggtgcttctctactgaacata
gcttattttattgcctttctttaaataatacaatgtagcaactatttgca
aagattcacttcatactagctatgctaaataattcagatcaattaaacat
atgtgcaaatatgtgcatacaatttgtacatgccatgccatttcctgtaa
ggaatttaaacatcttctgatttgggcatctatggcagttctgcaatcac
ctgaagatatcaaggcagagctatatttgaaaggtgtatctggtcagcct
atgaaggaattcaaaaaggaaagcattgaagtaagcattgagagggaccc
tggaagtctcagggagcagatatcaataactcacagccctttgacataag
aactcaagtgtattttaaatgactgctatgcaagtcattaatggaattgc
cttaactgctaaagcatttctggtcccatttcagtcaagcacgcaggagg
cacagaaagtctggggagtctatgtcaatgacattttcttttcactgtaa
gtaacaaaaagggtattgctatcttatacatcaatatgttgatataaata
gctagcaagtgatttattttcaggcttgcatccctgagagtagctcctga
attgtaccaaatttatcaagatatgtaataaattttacattcaacaacat
ccccttcttgccccccccaaaaccagatacaacaagatctttggtttcac
atactcttccttgatataccatttccataggtcttaactaatgtttctat
ttctgcaatgaaataccatgaccagagcaacttgtagaggaaagggctta
tttggctttcacttctgtatctctgctcatcaccaaagaaagtcaggata
gaaattcaaacgggcagggacctggaggcagagctgatgcagaggtcatg
gagggatgttgcttagtgttttgcctccttataagctttcttagcctgct
ttcttaaagaatccagaacaaccagtcttggaagtaacatccacctcaca
atgggctgggcctcccccttcattcccacctaggattcctataagtggat
ctttacctggaagcat
gaattcctcagaattaagaaaataatgtgcatatatacatttttacagga
gagagggcacatggttttgatgagattttcaatggggttcccttattaat
atgtttcactattcagtgtgtttgatgctgaaatgtagatttgtgttcca
accagatgcttggaagaaaagggaacatgatgtgaatgctttaaaagaag
tttttcaaaattaaataaggcctatttgagaaattttagattaagtaggg
tttcagcacagcataaatatttcttaagcaactgtcatcattataaaagg
aacagaagtatcaggaaaatacagacataatgcacaaaaagaaccaaagt
aaaaataatccaccttttccttttctgtaatattaggcataagagatgat
cttctcttctcccctccaaggcaacccagtctcaagagcaaattattatt
ttcttaaataaatcagttgattttgatcacacacatcacacagattatgt
tttactatataaaatgggtttttcatcagcctctcaccagctattacaca
ctcccagtcttgcctctgttggtagcagttgctacgatagaagaaacacc
atgaagtacctagcatctccattgctgatgcatgcttagacattttgttc
tctcgttcttgtttaatatctaaagattctgctgctttttggaacaggga
gaccttcagaaacgaagaggcgagaatcttcaaaattcactttcagaaaa
gcaactacaaccctggaaaattgccaagcgaccgtttcataagtttgaaa
attaacaggaagcttgcagtttcccaaggaacatttaatcaagcagagca
gtattctgccatagtaaccaaaagacttgtgggtttttaaacttacctag
tctgtgcactgatgctagatcttcagtttctttgaaagcagatagtttcc
catcatttcatcacactgtgtaaatagcactaacatacactgaggtgtgc
caggatgagttatcagagcccatcccagacactgtaaacatcagaagtcc
aatttataggctaggcttatatgtgtccagaactgctcaccgagaggcct
ttatctgggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143269121_143270335
seq2: B6Ng01-121G03.b_48_1263

seq1  GAATTCATTCAACCATGCACAAATATTCATGAAAAGGTGTATGAATGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAACCATGCACAAATATTCATGAAAAGGTGTATGAATGGTA  50

seq1  GGGGCAAAGATTAACAAGGTAAAATAGTAAATGAATATAAAATACTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAAGATTAACAAGGTAAAATAGTAAATGAATATAAAATACTATAT  100

seq1  ATTGTACATAAACTATAAAATAATTTTAAGGTGCTTCTCTACTGAACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACATAAACTATAAAATAATTTTAAGGTGCTTCTCTACTGAACATA  150

seq1  GCTTATTTTATTGCCTTTCTTTAAATAATACAATGTAGCAACTATTTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTTTATTGCCTTTCTTTAAATAATACAATGTAGCAACTATTTGCA  200

seq1  AAGATTCACTTCATACTAGCTATGCTAAATAATTCAGATCAATTAAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCACTTCATACTAGCTATGCTAAATAATTCAGATCAATTAAACAT  250

seq1  ATGTGCAAATATGTGCATACAATTTGTACATGCCATGCCATTTCCTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAAATATGTGCATACAATTTGTACATGCCATGCCATTTCCTGTAA  300

seq1  GGAATTTAAACATCTTCTGATTTGGGCATCTATGGCAGTTCTGCAATCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTAAACATCTTCTGATTTGGGCATCTATGGCAGTTCTGCAATCAC  350

seq1  CTGAAGATATCAAGGCAGAGCTATATTTGAAAGGTGTATCTGGTCAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGATATCAAGGCAGAGCTATATTTGAAAGGTGTATCTGGTCAGCCT  400

seq1  ATGAAGGAATTCAAAAAGGAAAGCATTGAAGTAAGCATTGAGAGGGACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGAATTCAAAAAGGAAAGCATTGAAGTAAGCATTGAGAGGGACCC  450

seq1  TGGAAGTCTCAGGGAGCAGATATCAATAACTCACAGCCCTTTGACATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTCTCAGGGAGCAGATATCAATAACTCACAGCCCTTTGACATAAG  500

seq1  AACTCAAGTGTATTTTAAATGACTGCTATGCAAGTCATTAATGGAATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGTGTATTTTAAATGACTGCTATGCAAGTCATTAATGGAATTGC  550

seq1  CTTAACTGCTAAAGCATTTCTGGTCCCATTTCAGTCAAGCACGCAGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTGCTAAAGCATTTCTGGTCCCATTTCAGTCAAGCACGCAGGAGG  600

seq1  CACAGAAAGTCTGGGGAGTCTATGTCAATGACATTTTCTTTTCACTGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAGTCTGGGGAGTCTATGTCAATGACATTTTCTTTTCACTGTAA  650

seq1  GTAACAAAAAGGGTATTGCTATCTTATACATCAATATGTTGATATAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAAAAGGGTATTGCTATCTTATACATCAATATGTTGATATAAATA  700

seq1  GCTAGCAAGTGATTTATTTTCAGGCTTGCATCCCTGAGAGTAGCTCCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCAAGTGATTTATTTTCAGGCTTGCATCCCTGAGAGTAGCTCCTGA  750

seq1  ATTGTACCAAATTTATCAAGATATGTAATAAATTTTACATTCAACAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACCAAATTTATCAAGATATGTAATAAATTTTACATTCAACAACAT  800

seq1  CCCCTTCTTGCCCCCCCCAAAACCAGATACAACAAGATCTTTGGTTTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCTTGCCCCCCCCAAAACCAGATACAACAAGATCTTTGGTTTCAC  850

seq1  ATACTCTTCCTTGATATACCATTTCCATAGGTCTTAACTAATGTTTCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTTCCTTGATATACCATTTCCATAGGTCTTAACTAATGTTTCTAT  900

seq1  TTCTGCAATGAAATACCATGACCAGAGCAACTTGTAGAGGAAAGGGCTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAATGAAATACCATGACCAGAGCAACTTGTAGAGGAAAGGGCTTA  950

seq1  TTTGGCTTTCACTTCTGTATCTCTGCTCATCACCAAAGAAAGTCAGGATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTTCACTTCTGTATCTCTGCTCATCACCAAAGAAAGTCAGGATA  1000

seq1  GAAATTCAAACGGGCAGGGACCTGGAGGCAGGAGCTGATGCAGAGGTCAT  1050
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAAATTCAAACGGGCAGGGACCTGGAGGCA-GAGCTGATGCAGAGGTCAT  1049

seq1  GGAGGGATGTTGCTTAGTGTCTTG-CTCCTTAT-AGCTTTCTTAGCCTGC  1098
      |||||||||||||||||||| ||| |||||||| ||||||||||||||||
seq2  GGAGGGATGTTGCTTAGTGTTTTGCCTCCTTATAAGCTTTCTTAGCCTGC  1099

seq1  TTTCTTATAGAATCCAGAACAACCAGTCTTGG-AGTAACATC--ACTCAC  1145
      ||||||| |||||||||||||||||||||||| |||||||||   |||||
seq2  TTTCTTAAAGAATCCAGAACAACCAGTCTTGGAAGTAACATCCACCTCAC  1149

seq1  AATGGGCTGGGCCCTCCCCCATCAATCACCAACTAAGAAAATACCCTATA  1195
      ||||||||||| |||||||| ||| || ||| ||| ||      ||||||
seq2  AATGGGCTGGG-CCTCCCCCTTCATTC-CCACCTAGGA----TTCCTATA  1193

seq1  AGTGGATC-TTAC--TGAAGCAT  1215
      |||||||| ||||   |||||||
seq2  AGTGGATCTTTACCTGGAAGCAT  1216

seq1: chr2_143397226_143398368
seq2: B6Ng01-121G03.g_66_1177 (reverse)

seq1  ATGCCCCAAAGATAAAGCCTTCCTCGGTGAGCAATGTCTGAGACACATAA  50
      ||||||   |||||||| | | ||||||||||| | |||| ||||||| |
seq2  ATGCCC---AGATAAAGGCCT-CTCGGTGAGCAGT-TCTG-GACACAT-A  43

seq1  TAAGCTTTAGCCCTATAAATGGGACTTTCTGGATGTTTTACAGTTGTCTG  100
      |||||  ||| ||||||||| |||| |||| |||| ||||||| ||||||
seq2  TAAGC-CTAG-CCTATAAATTGGAC-TTCT-GATG-TTTACAG-TGTCTG  87

seq1  GGAATGGGGCTTCTTGAATAACTCCAATCCTGGGCACACCCTCCAGTGTA  150
      || |||||    ||   |||||||  ||||| ||||||||   |||||||
seq2  GG-ATGGG----CTCTGATAACTC--ATCCT-GGCACACC--TCAGTGTA  127

seq1  TGTTAAGTTGCTATTTTACACAGTGTGATTGAAATGATTGGGAAACTATC  200
      |||||   ||||| |||||||||||||| |||||||| ||||||||||||
seq2  TGTTA--GTGCTA-TTTACACAGTGTGA-TGAAATGA-TGGGAAACTATC  172

seq1  TGCTTTCAAAGAAACTGAAGAATCTAGCATCAGTGCACAGACTAGGTAAG  250
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGCTTTCAAAGAAACTGAAG-ATCTAGCATCAGTGCACAGACTAGGTAAG  221

seq1  TTTAAAAAACCCACAAGTCTTTTGGTTACTATTGGCAGAATACTGCTCTG  300
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTT-AAAAACCCACAAGTCTTTTGGTTACTA-TGGCAGAATACTGCTCTG  269

seq1  CTTGATTAAATGTTCCTTGGGAAACTGCAAGCTTCCTGTTAATTTTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTAAATGTTCCTTGGGAAACTGCAAGCTTCCTGTTAATTTTCAAA  319

seq1  CTTATGAAACGGTCGCTTGGCAATTTTCCAGGGTTGTAGTTGCTTTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGAAACGGTCGCTTGGCAATTTTCCAGGGTTGTAGTTGCTTTTCTG  369

seq1  AAAGTGAATTTTGAAGATTCTCGCCTCTTCGTTTCTGAAGGTCTCCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAATTTTGAAGATTCTCGCCTCTTCGTTTCTGAAGGTCTCCCTGT  419

seq1  TCCAAAAAGCAGCAGAATCTTTAGATATTAAACAAGAACGAGAGAACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAAGCAGCAGAATCTTTAGATATTAAACAAGAACGAGAGAACAAA  469

seq1  ATGTCTAAGCATGCATCAGCAATGGAGATGCTAGGTACTTCATGGTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAAGCATGCATCAGCAATGGAGATGCTAGGTACTTCATGGTGTTT  519

seq1  CTTCTATCGTAGCAACTGCTACCAACAGAGGCAAGACTGGGAGTGTGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATCGTAGCAACTGCTACCAACAGAGGCAAGACTGGGAGTGTGTAA  569

seq1  TAGCTGGTGAGAGGCTGATGAAAAACCCATTTTATATAGTAAAACATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGTGAGAGGCTGATGAAAAACCCATTTTATATAGTAAAACATAAT  619

seq1  CTGTGTGATGTGTGTGATCAAAATCAACTGATTTATTTAAGAAAATAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGATGTGTGTGATCAAAATCAACTGATTTATTTAAGAAAATAATA  669

seq1  ATTTGCTCTTGAGACTGGGTTGCCTTGGAGGGGAGAAGAGAAGATCATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTCTTGAGACTGGGTTGCCTTGGAGGGGAGAAGAGAAGATCATCT  719

seq1  CTTATGCCTAATATTACAGAAAAGGAAAAGGTGGATTATTTTTACTTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGCCTAATATTACAGAAAAGGAAAAGGTGGATTATTTTTACTTTGG  769

seq1  TTCTTTTTGTGCATTATGTCTGTATTTTCCTGATACTTCTGTTCCTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTGTGCATTATGTCTGTATTTTCCTGATACTTCTGTTCCTTTTA  819

seq1  TAATGATGACAGTTGCTTAAGAAATATTTATGCTGTGCTGAAACCCTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATGACAGTTGCTTAAGAAATATTTATGCTGTGCTGAAACCCTACT  869

seq1  TAATCTAAAATTTCTCAAATAGGCCTTATTTAATTTTGAAAAACTTCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTAAAATTTCTCAAATAGGCCTTATTTAATTTTGAAAAACTTCTTT  919

seq1  TAAAGCATTCACATCATGTTCCCTTTTCTTCCAAGCATCTGGTTGGAACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCATTCACATCATGTTCCCTTTTCTTCCAAGCATCTGGTTGGAACA  969

seq1  CAAATCTACATTTCAGCATCAAACACACTGAATAGTGAAACATATTAATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTACATTTCAGCATCAAACACACTGAATAGTGAAACATATTAATA  1019

seq1  AGGGAACCCCATTGAAAATCTCATCAAAACCATGTGCCCTCTCTCCTGTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACCCCATTGAAAATCTCATCAAAACCATGTGCCCTCTCTCCTGTA  1069

seq1  AAAATGTATATATGCACATTATTTTCTTAATTCTGAGGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTATATATGCACATTATTTTCTTAATTCTGAGGAATTC  1112