BAC Information

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BAC

Clone NameB6Ng01-122B05
ChromosomeY (Build37)2 (Build37)
Map Location 385,617 - 385,778170,024,429 - 170,024,585
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y
Downstream geneTspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122B05.bB6Ng01-122B05.g
ACCDH925598DH925599
length946906
definitionDH925598|Mus musculus domesticus DNA, BAC clone: B6Ng01-122B05, 5' end.DH925599|Mus musculus domesticus DNA, BAC clone: B6Ng01-122B05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(385,617 - 385,778)(170,024,429 - 170,024,585)
sequence
gaattctttgtttagctctatacccaaatttttaataggattatttgatt
ctctgaagtctaacttctctttgtacattttggatattagccctcttttg
aatgtagggttggtaaagatcttttctcaatctgttggttgctattttgt
cttattgacagtgtcctttgccttacagaagctttccaattttatgaggt
tccatttatcaattctctctctctctctctctctctctctctctttggtt
tttcgagacagggtttctttgtgtagccctggctgtcctggaactcactc
tgtagaccaggatggcctcgaactcagaaattcacctgcctctgcctccc
aagtgttgggactaaaggcgtgtgccaccacacccagcctttttattttt
aattttttcaattcttgatcttagagcataagccattggtgttctgttca
ggcatttcccccctatgcccatatattcagggtctttcccactttctctt
tattagattcagattcagtgcatctggttttatgtggaggtccttgatcc
actggaacttgagctttgtacatggagataggaatggatcaatttgcatt
cttttacatgctgaccaccagttgtaccagcaccatttgttgaaaatgct
gtcttattttttttttttttttggcactgtatggttttagctcctttgtc
aaagatcaagtgaccgttggtgtgtgggttcatttctggttattcaattc
tattctactgatttacctgcctgtttctataccaataccatagagttttt
tgttttgtttttattattattatttatttactattgcccacgcttttgtt
ccactggcagaaagacgcaacaaaccggaatcttctgcggcaaaagcttt
attgcttacatctcagagcagagagaaaatgcaaaccccgtccctt
gaattctctgttagctctttagccctttttttttttccggtttttcgaga
cagggtttctctgtttggccctggctgtcctggaactcactctatagacc
aggctggcctctatctcagaaatccgcctgcctctgcctctgcctctgcc
tctgcctcccaagtgctggaattaaaggcgtgcgccaccaccgcccagct
accccattttttaaaattgatttatttgggttgttggtgtctaacttcct
gagttccttatatgtcttggatattagccctctgtcaaattatgggttgg
tgaagatcttttcccactttttaggcagtcattttgtctcattgagggtg
tcctttgatttacaggagcttttcagttccttgaggtcccatttcttaat
tgttgatcttagtgcctgaaccattggtattctgttcaggaagttgtctc
ctagaccaatgagttcaaggttattccctactttctgttctatttcatgt
atctggttttatgttgaggtctttcatccacttagacttgagttttgtga
aggggataagtatggatccatttgaattcttctacatgcagacttccagt
tagcacaagttgttcaaattgctttccctttttccattttgtggttttgg
ctttattgttgttgttgttattattattattattcagaaatcaagtgtca
gtaggtatgtggggtttctatctgggtctttgattcgattctattggatc
aaccttgagtgttttctataccagtaccatgcacttgtttattcctattt
gctgtgtattacagcttgaagtcaaaagatattataccctccagaagttc
tttctatggtcaggattgtttcggcctttcctgtttttgtttgcttgctt
gtttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_385617_385778
seq2: B6Ng01-122B05.b_291_443

seq1  TTTGGTTTTTTGAGACAGGTTTTCTCTATATATAGCCCTGGCTGTCCTGG  50
      |||||||||| |||||||| ||  ||| | | ||||||||||||||||||
seq2  TTTGGTTTTTCGAGACAGGGTT--TCTTTGTGTAGCCCTGGCTGTCCTGG  48

seq1  AACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCT  100
      |||||||||||||||||||| |||||||||||||||||||   |||||||
seq2  AACTCACTCTGTAGACCAGGATGGCCTCGAACTCAGAAATTCACCTGCCT  98

seq1  CTGCCTCCCGAGTGCTGGGATTAAAGGCTTGCGCCACCACACCCGGCCTA  150
      ||||||||| |||| ||||| ||||||| || |||||||||||| |||| 
seq2  CTGCCTCCCAAGTGTTGGGACTAAAGGCGTGTGCCACCACACCCAGCCT-  147

seq1  ATTTCATTTTAT  162
            ||||||
seq2  ------TTTTAT  153

seq1: chr2_170024429_170024585
seq2: B6Ng01-122B05.g_94_264

seq1  TTTTTTTTTTTCCCCCTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCC  50
      |||||||||||||    |||||||||||||||||||||||||| | ||||
seq2  TTTTTTTTTTTCC----GGTTTTTCGAGACAGGGTTTCTCTGTTTGGCCC  46

seq1  TGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAA  100
      |||||||||||||||||||||| ||||||||||||||||  | |||||||
seq2  TGGCTGTCCTGGAACTCACTCTATAGACCAGGCTGGCCTCTATCTCAGAA  96

seq1  ATCCTC------------------CTGCCTCTGCCTCCCAAGTGCTGGGA  132
      |||| |                  |||||||||||||||||||||||| |
seq2  ATCCGCCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCCCAAGTGCTGGAA  146

seq1  TTAAAGGTGTGGGCCACCACCGCCC  157
      ||||||| ||| |||||||||||||
seq2  TTAAAGGCGTGCGCCACCACCGCCC  171