BAC Information

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BAC

Clone NameB6Ng01-123K03
Chromosome2 (Build37)10 (Build37)
Map Location 83,588,168 - 83,588,78433,904,191 - 33,904,949
singlet/doubletsingletsinglet
Overlap geneItgav
Upstream geneLOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Dnmt3l-ps1
Downstream geneD430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123K03.bB6Ng01-123K03.g
ACCDH926746DH926747
length955762
definitionDH926746|Mus musculus domesticus DNA, BAC clone: B6Ng01-123K03, 5' end.DH926747|Mus musculus domesticus DNA, BAC clone: B6Ng01-123K03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(83,588,168 - 83,588,784)(33,904,191 - 33,904,949)
sequence
gaattctactgcaagattgttttctagatatgatgagtttctatgagcag
gagatctcaaaactaagacagttcaagatctaaacgatgacactaacaag
ccaacatggaagggggaaatctatagaacctcaccacttgatgcagagct
ataggcaattaactgctgagaggcaatttagtcttcctcacacatggcac
cctaaatagttatccagtcccaggttatcctaaaaaatacacatacaagc
aacactaaatggactcagcagattgcatttatacatgtagtattccccaa
taaagaataaggtcattgatttgaaaacagcatgtgaggtggtggggggg
ggaatggttcaaattggtagtgaaatttggtctggccattggtgcaggcc
tctgatcaaaggtgggccatgggagcatgctgttactctcccctcctgct
gtttcccaggtttctgcttctgcagcctgcctgcccacactctttctctc
ttcctgctcagtttgatagtctccgtggtgccattgaacaaagtcaaatc
ctgttttctcacacaccttttatttatttatgtatttatttattttttta
tttatttaagcataatttctttgttgattcttttgtgaacttcacacctt
acacctcatcccactcaatttccagtccttccatatccgatactttctac
cctttaaccaccccccccaaagaaaattaaaataaaacaaacaaacaaac
caaaccctgccgcgtgctcttacccaatcatcttgctgtaatattattgc
gagagtcatcggtctcttttgaggtcttaggcttctgctaccctatcata
ctgaccctctcagatatcctgttgttgcctttgtctggagatcctgcgga
ccgggtctctttctgtgctccacacttcatatctgggttgtgttgattgg
gccaa
gaattccctgacttttctctgggggggaattatgcctgctttatcccaga
tgtgggacatagacaatgctgagggtttgtgtgtgtgagtgtgtatattt
gctaccatttgaaggtagttcttttaactagtgaacaaatatgtcatggg
gggggggagaactataaagaaaaacaactagataagataatatttaagcc
tgctttatatttctaatttaccgattgataccaaagccctatatacaaaa
tgaaaaggcatacagtggtttccagaagtgaggggaaacatattcactag
tcatccagtctttcagtactgggattttcttttctggatgaaggcatgac
agtttcctagtcgcagatccctgactttggcctttatggagacctgacgt
cagcccaggaagcctttggcagattcttctggcttctccggtctaccttc
tgctcccacaaaggaggacagttaaccttactcacattgttgtatcaaca
taggtccacacagatgtgctgattccagtgcctgggtcatagtgtaaaat
gttaggaagaaagatgtcatggtggtgaaataggttggactaaaaataga
attttctccatttttcatagcggttcccaattctctggtttccaagaaag
tttatcatcaactgttagtgattgtgctttatgtattcatggctaagata
ctatcaaatctcaatttttcatgcatgattattgtatgcagaaaagatat
tttttgcacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_83588168_83588784
seq2: B6Ng01-123K03.b_399_997

seq1  GTTCAAATTGGTAGTGAAATTTGGTCTGGCCATTGGTGCAGGCCTCTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAATTGGTAGTGAAATTTGGTCTGGCCATTGGTGCAGGCCTCTGAT  50

seq1  CAAAGGTGGGCCATGGGAGCATGCTGTTACTCTCCCCTCCTGCTGTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTGGGCCATGGGAGCATGCTGTTACTCTCCCCTCCTGCTGTTTCC  100

seq1  CAGGTTTCTGCTTCTGCAGCCTGCCTGCCCACACTCTTTCTCTCTTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTCTGCTTCTGCAGCCTGCCTGCCCACACTCTTTCTCTCTTCCTG  150

seq1  CTCAGTTTGATAGTCTCCGTGGTGCCATTGAACAAAGTCAAATCCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTTGATAGTCTCCGTGGTGCCATTGAACAAAGTCAAATCCTGTTT  200

seq1  TCTCACACACCTTTTATTTATTTATGTATTTATTTATTTTTTTATTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACACACCTTTTATTTATTTATGTATTTATTTATTTTTTTATTTATT  250

seq1  TAAGCATAA-TTCTTTGTTGATTC-TTTGTGAACTTCACACCTTACACCT  298
      ||||||||| |||||||||||||| |||||||||||||||||||||||||
seq2  TAAGCATAATTTCTTTGTTGATTCTTTTGTGAACTTCACACCTTACACCT  300

seq1  CAATCCCACTCAATTTCCAGTCCTTCCATATCCGATACTTTCTACCCTTT  348
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  C-ATCCCACTCAATTTCCAGTCCTTCCATATCCGATACTTTCTACCC-TT  348

seq1  TAACCACCCCCCCCAAAGAAAATTAAAAATTAAAACAAACAAACAAAACC  398
      ||||||||||||||||||||||||||||  |||||||||||||| |||||
seq2  TAACCACCCCCCCCAAAGAAAATTAAAA--TAAAACAAACAAAC-AAACC  395

seq1  AAACCCTGCCGCGTGCCCTTTACCCAATCATCTTTGCTTGTAAATATTCA  448
      |||||||||||||||| | ||||||||||||| |||| ||| |||||| |
seq2  AAACCCTGCCGCGTGCTC-TTACCCAATCATC-TTGC-TGT-AATATT-A  440

seq1  TTGCGATGAGTCATCGGTCTCATTTGAGGTCTTTGGCTTCTGCTACCCTA  498
      |||||| |||||||||||||| ||||||||||| ||||||||||||||||
seq2  TTGCGA-GAGTCATCGGTCTCTTTTGAGGTCTTAGGCTTCTGCTACCCTA  489

seq1  TCAATACTGGACCCTCTCAGATATCCTGTTGTTGCCTTTTGTCTTGGAGA  548
      || ||||| ||||||||||||||||||||||||||| |||||| ||||||
seq2  TC-ATACT-GACCCTCTCAGATATCCTGTTGTTGCC-TTTGTC-TGGAGA  535

seq1  TCCTGCGGGACCGGGTCTCTTCATGTGCTCCAGCAGCTCATAGCTGGGGT  598
      |||||| ||||||||||||||  ||||||||| ||  ||||| || ||||
seq2  TCCTGC-GGACCGGGTCTCTTTCTGTGCTCCA-CACTTCATATCT-GGGT  582

seq1  TGATGTTGGGCTGGGCCAA  617
      || |||| |  ||||||||
seq2  TG-TGTT-GATTGGGCCAA  599

seq1: chr10_33904191_33904949
seq2: B6Ng01-123K03.g_66_827 (reverse)

seq1  GAAGTG-AAAAAATATC-TTTCT-CATA-AATTATCATGCA-GAAAATTT  45
      |||||| |||||||||| ||||| |||| ||| |||||||| ||||| ||
seq2  GAAGTGCAAAAAATATCTTTTCTGCATACAATAATCATGCATGAAAAATT  50

seq1  GAGATTTTTATAGTATCTTAGACATGAATACATAAACCACAATCACTAAA  95
      |||| ||| |||||||||||| |||||||||||||| |||||||||||| 
seq2  GAGA-TTTGATAGTATCTTAGCCATGAATACATAAAGCACAATCACTAAC  99

seq1  AGCTGATGATAAACTCTCCTGGAAACCAGAGAACTGGGAACCGCTATGAA  145
      || |||||||||||| || |||||||||||||| ||||||||||||||||
seq2  AGTTGATGATAAACTTTCTTGGAAACCAGAGAATTGGGAACCGCTATGAA  149

seq1  AAATGGAGAAAATTCTATTTCTTAGTCCAACCTATTTCACCACCATGACA  195
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAATGGAGAAAATTCTATTT-TTAGTCCAACCTATTTCACCACCATGACA  198

seq1  TCTTTCTTCCTTACATTTTACACTATGACCCAGGCACTGGAATCAGCACA  245
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCCTAACATTTTACACTATGACCCAGGCACTGGAATCAGCACA  248

seq1  TCTGTGTGGACCTATGTTGATACAACAATGTGAGTAAGGTTAACTGTCCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGGACCTATGTTGATACAACAATGTGAGTAAGGTTAACTGTCCT  298

seq1  CCTTTGTGGGAGCAGAAGGTAGACCGGAGAAGCCAGAAGAATCTGCCAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGGGAGCAGAAGGTAGACCGGAGAAGCCAGAAGAATCTGCCAAA  348

seq1  GGCTTCCTGGGCTGACGTCAGGTCTCCATAAAGGCCAAAGTCAGGGATCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCTGGGCTGACGTCAGGTCTCCATAAAGGCCAAAGTCAGGGATCT  398

seq1  GCGACTAGGAAACTGTCATGCCTTCATCCAGAAAAGAAAATCCCAGTACT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACTAGGAAACTGTCATGCCTTCATCCAGAAAAGAAAATCCCAGTACT  448

seq1  GAAAGACTGGATGACTAGTGAATATGTTTCCCCTCACTTCTGGAAACCAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACTGGATGACTAGTGAATATGTTTCCCCTCACTTCTGGAAACCAC  498

seq1  TGTATGCCTTTTCATTTTGTATATAGGGCTTTGGTATCAATCGGTAAATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCCTTTTCATTTTGTATATAGGGCTTTGGTATCAATCGGTAAATT  548

seq1  AGAAATATAAAGCAGGCTTAAATATTATCTTATCTAGTTGTTTTTCTTTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATAAAGCAGGCTTAAATATTATCTTATCTAGTTGTTTTTCTTTA  598

seq1  TAGTTCTCCCCCCCCCCATGACATATTTGTTCACTAGTTAAAAGAACTAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTCCCCCCCCCCATGACATATTTGTTCACTAGTTAAAAGAACTAC  648

seq1  CTTCAAATGGTAGCAAATATACACACTCACACACACAAACCCTCAGCATT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATGGTAGCAAATATACACACTCACACACACAAACCCTCAGCATT  698

seq1  GTCTATGTCCCACATCTGGGATAAAGCAGGCATAATTCCCCCCCAGAGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGTCCCACATCTGGGATAAAGCAGGCATAATTCCCCCCCAGAGAA  748

seq1  AAGTCAGGGAATTC  759
      ||||||||||||||
seq2  AAGTCAGGGAATTC  762