BAC Information

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BAC

Clone NameB6Ng01-123K09
Chromosome2 (Build37)2 (Build37)
Map Location 167,998,642 - 167,999,783132,091,423 - 132,091,779
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKcnb1, Ptgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik, Pard6b
Downstream geneAdnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952, Nfatc2, Atp9a, Sall4, Zfp64, LOC100043909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123K09.bB6Ng01-123K09.g
ACCDH926758DH926759
length1,132956
definitionDH926758|Mus musculus domesticus DNA, BAC clone: B6Ng01-123K09, 5' end.DH926759|Mus musculus domesticus DNA, BAC clone: B6Ng01-123K09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(167,998,642 - 167,999,783)(132,091,423 - 132,091,779)
sequence
gaattccttttaaagcaaggatgctcatgcatatacagtattactttcat
agagggtctcactgggcagccctggctgtcctggagctcactatgtagac
caggctggcctcaaactcacaaagcctgcctgtctctacatccatagtgg
tgtactccaccacactgactgctccttttttaagtttatttttgtgagca
cgagtgttttgtctgcatatagttctgtgtgtcacacatggaagacaaaa
ggtgctgccagatgccccgggacgagggttacaggcagttatgagcctcc
atgtgggtacggggagctgaccgcagcttctctggaggagtagccagtgc
tctcacctgctcagcgacccctccagcctgtaagcgagttcttcgtttct
cttgtgcatacagggcttttgtttgtatgtatgtctatgtctgggcactg
tgtgtttgtctggtaccagaggaggtcagaagaggccatcagaactggag
ttgccagcagctatgtgggtgctggaaatcaaaactgaaactagtccctc
tgaagagcagctaatgctctcatctgctcagtatctcttcagctccccga
atgtgctttctacacacacacacacacacacacacacacacacacacaca
cacacacacacacacattgaaaggataaaattaaaactccaaataatgaa
cctgttgggagggcagtagaaaggtgtcttaattaagggttgatacaatg
aaacactcggacagaaagcaacttggagaggagagggtttatataatggc
ttacacatccacaccattgttcagcattggaggaagtcaggacagaactc
aagcagggcaggaacctggaggcaggagctggtgcaaggcccagaggagg
gctgctttactggcttcctccccatgaaggtgctcagcctgctttctata
gacccaggaccaccagccaggagaggaggtagtacacccacaagtgggct
tggccctttctccatcaatcactaaagaaatctacagtttgcctgtaatt
gagcatctaagttcaatgcacgaagttcgaagtatgaaaactgccatgat
cagagaactaaattaagttctctgccccagct
gaattcaaagccagcctggtctacaagagagagatccaggacacccagga
ctacatagtgaactgtctcaaaaattaccaaaattggatgtatgtacagt
aaattttagttagattactagcacaaaaaaaaaaaaatagataaaatcaa
gaaactactctcgctgggcagtggtggcacatgcctttaatcccagcact
tgggaggcagaggcaggcagatttctaaattcgaggccagcctggtctac
aaagtgagttccaggacagccggggctatacagagaaaccctgtctcaaa
aaaccaaaaccgaaacaaaacaaaaagattgttttctgttttgttttgtt
gtttctttttttcccttatgaatattgatgctttcttttttaatttatta
gatattttctttatttacatttcaaatgttatctcctttcctagttttcc
ctccgaaaatcccctatcttctcccccctcctcctgctcctcaaccctgc
ttcctggccctggcagtcccctataatggggcataaagccttcacaggac
caagggcctctcctcccattgatgaccaactaggccatcctctgctacat
atgcaactagagccacgagtccctccatgtgttttctttgattggtggtt
tagtcccagggagctctgggtttactggttagttcatattgttgttcctc
ctagggggctgcaaaccccttcagctcctcgggtactttctctagctcct
tcattggggacctgtgctccatctaatggatgactgtgagcatacacttg
tgtatttgtcagcactggcagagcctctcaggaaacagctatatcaggct
ccctgtcagcaagctcttgttggcatctgcaatagtgtctgggtttggtg
gcttgttatgggatggatccccagtggggcagtctctggatgtcattcct
tcagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_167998642_167999783
seq2: B6Ng01-123K09.b_46_1177

seq1  GAATTCCTTTTAAAGCAAGGATGCTCATGCATATACAGTATTACTTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTAAAGCAAGGATGCTCATGCATATACAGTATTACTTTCAT  50

seq1  AGAGGGTCTCACTGGGCAGCCCTGGCTGTCCTGGAGCTCACTATGTAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTCTCACTGGGCAGCCCTGGCTGTCCTGGAGCTCACTATGTAGAC  100

seq1  CAGGCTGGCCTCAAACTCACAAAGCCTGCCTGTCTCTACATCCATAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCCTCAAACTCACAAAGCCTGCCTGTCTCTACATCCATAGTGG  150

seq1  TGTACTCCACCACACTGACTGCTCCTTTTTTAAGTTTATTTTTGTGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCCACCACACTGACTGCTCCTTTTTTAAGTTTATTTTTGTGAGCA  200

seq1  CGAGTGTTTTGTCTGCATATAGTTCTGTGTGTCACACATGGAAGACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGTTTTGTCTGCATATAGTTCTGTGTGTCACACATGGAAGACAAAA  250

seq1  GGTGCTGCCAGATGCCCCGGGACGAGGGTTACAGGCAGTTATGAGCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGCCAGATGCCCCGGGACGAGGGTTACAGGCAGTTATGAGCCTCC  300

seq1  ATGTGGGTACGGGGAGCTGACCGCAGCTTCTCTGGAGGAGTAGCCAGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGTACGGGGAGCTGACCGCAGCTTCTCTGGAGGAGTAGCCAGTGC  350

seq1  TCTCACCTGCTCAGCGACCCCTCCAGCCTGTAAGCGAGTTCTTCGTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCTGCTCAGCGACCCCTCCAGCCTGTAAGCGAGTTCTTCGTTTCT  400

seq1  CTTGTGCATACAGGGCTTTTGTTTGTATGTATGTCTATGTCTGGGCACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCATACAGGGCTTTTGTTTGTATGTATGTCTATGTCTGGGCACTG  450

seq1  TGTGTTTGTCTGGTACCAGAGGAGGTCAGAAGAGGCCATCAGAACTGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGTCTGGTACCAGAGGAGGTCAGAAGAGGCCATCAGAACTGGAG  500

seq1  TTGCCAGCAGCTATGTGGGTGCTGGAAATCAAAACTGAAACTAGTCCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGCAGCTATGTGGGTGCTGGAAATCAAAACTGAAACTAGTCCCTC  550

seq1  TGAAGAGCAGCTAATGCTCTCATCTGCTCAGTATCTCTTCAGCTCCCCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGCAGCTAATGCTCTCATCTGCTCAGTATCTCTTCAGCTCCCCGA  600

seq1  ATGTGCTTTCTACACACACACACACACACACACACACACACACACACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTTTCTACACACACACACACACACACACACACACACACACACACA  650

seq1  CACACACACACACACATTG-AAGGATAAAATTAAAACTCCAAAATAATGA  699
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  CACACACACACACACATTGAAAGGATAAAATTAAAACTCC-AAATAATGA  699

seq1  ACCTGTTGGGAGGGCAGTAGAAAGGTGTCTTAATTAAGGGTTGATACAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTGGGAGGGCAGTAGAAAGGTGTCTTAATTAAGGGTTGATACAAT  749

seq1  GAAACACTCGGACAGAAAGCAACTTGGAGAGGAGAGGGTTTATATAATGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACTCGGACAGAAAGCAACTTGGAGAGGAGAGGGTTTATATAATGG  799

seq1  CTTACACATCCACACCATTGTTCAGCATTGGAGGAAGTCAGGACAGGAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTACACATCCACACCATTGTTCAGCATTGGAGGAAGTCAGGACA-GAAC  848

seq1  TCAAGCAGGGCAGGAACCTGGAGGCAGGAGCTGGTGCAGAGGCCACAGAG  899
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  TCAAGCAGGGCAGGAACCTGGAGGCAGGAGCTGGTGCA-AGGCC-CAGAG  896

seq1  GAGGGCTGC-TTACTGGCTTCCTCCCCATGAAGGTGCTCAGCCTGCTTTC  948
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTGCTTTACTGGCTTCCTCCCCATGAAGGTGCTCAGCCTGCTTTC  946

seq1  TTATAGAACCCAGGACCACCAGCCAGGAGAGGAGGTAGTACAACCCAC-A  997
       ||||| |||||||||||||||||||||||||||||||||| |||||| |
seq2  -TATAG-ACCCAGGACCACCAGCCAGGAGAGGAGGTAGTAC-ACCCACAA  993

seq1  GTGGGCTGGGCCC-TTCCCCATCAATCACTAAGGAAATCTACAGGTTTGC  1046
      ||||||| ||||| ||| |||||||||||||| |||||||||| ||||||
seq2  GTGGGCTTGGCCCTTTCTCCATCAATCACTAAAGAAATCTACA-GTTTGC  1042

seq1  CTGT-ATTGAGCATCTTAAGTTCAGTGCAGGGAAGTCCTGTATGTAGAAG  1095
      |||| |||||||||| |||||||| ||||  |||||  |  | |||  | 
seq2  CTGTAATTGAGCATC-TAAGTTCAATGCA-CGAAGT--TCGAAGTATGAA  1088

seq1  AACTGCCATGTCCAGAGGACATAAGTTTATAGTTCTCTGCCCCAGCT  1142
      ||||||||||  ||||| || ||| ||   |||||||||||||||||
seq2  AACTGCCATGATCAGAGAAC-TAAATT--AAGTTCTCTGCCCCAGCT  1132

seq1: chr2_132091423_132091779
seq2: B6Ng01-123K09.g_74_390 (reverse)

seq1  TTTTTGT----------TGTTGTTATTTTGAGACAGGGTTTCTCTGTATA  40
      |||||||          | ||| | |||||||||||||||||||||||||
seq2  TTTTTGTTTTGTTTCGGTTTTGGTTTTTTGAGACAGGGTTTCTCTGTATA  50

seq1  GCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGGTGGCCTCGAACTC  90
      |||| ||||||||||||||||||||||||||||||| |||||||||| | 
seq2  GCCCCGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAATTT  100

seq1  AGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGC  140
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGC  150

seq1  CACCACCGCC---CGA-AAAAATTTTTAAAAGTTATTTAAAAATTAAAAA  186
      |||||| |||   ||| |  | ||| |  |  |||| ||           
seq2  CACCACTGCCCAGCGAGAGTAGTTTCTTGATTTTATCTA-----------  189

seq1  AAATGTGCTTAGGAAACAGTGAAATGCCTTTTTTTTTTTTGATG--AATA  234
                                  ||||||||||||  ||  | ||
seq2  ----------------------------TTTTTTTTTTTTTGTGCTAGTA  211

seq1  TATGTAGCAAAAATTTTAAAATCTGAATTCTTTTTTTTTTTTTTTTTTTC  284
       || || | |||||||   | | |  || | |    ||||          
seq2  -ATCTAACTAAAATTT---ACTGTACATACATCCAATTTT----------  247

seq1  CCTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAA  334
         |  ||||||||||||   ||| || ||||||||||| ||||||||| 
seq2  -GGTAATTTTTGAGACAG---TTCACTATGTAGTCCTGGGTGTCCTGGAT  293

seq1  CTCACT-TTGTAGACCAGGCTGGC  357
      ||| || |||||||||||||||||
seq2  CTCTCTCTTGTAGACCAGGCTGGC  317