BAC Information

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BAC

Clone NameB6Ng01-123M23
Chromosome2 (Build37)
Map Location 67,267,871 - 67,404,766
singlet/doubletdoublet
Overlap geneCmya3
Upstream geneScn1a, LOC383706, Scn9a, Scn7a, LOC383707, LOC100039540, Gm1322
Downstream geneLOC621171, LOC227995, B3galt1, Stk39, LOC100039683, Gm1323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123M23.bB6Ng01-123M23.g
ACCDH926878DH926879
length1,1111,065
definitionDH926878|Mus musculus domesticus DNA, BAC clone: B6Ng01-123M23, 5' end.DH926879|Mus musculus domesticus DNA, BAC clone: B6Ng01-123M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,267,871 - 67,268,977)(67,403,699 - 67,404,766)
sequence
gaattctagaaaaagaatctctaaagtggtaatagaagaataaattacca
taaatacatttaagcttcggctccatgaccaacatatttggtactaaaag
actagaaaaatagaaagaataagtttcccaatacttatagacatcaacat
atcaatatgggactatcaataaaaaaatcaaacataaaattaggtaatgg
ttaagaaccaaatcgaaattagaaacagataaaatcgtaggaaaaacgtg
aacagcgctattaataattaaagcaataaacattaccacaatcctcagac
acagagtttctcatttgaagagcaatgacgtagaactgtttgttaataat
gtgtggttgtggaatctgtacagaaatgtctttgtactagtacaaaaata
ggatcatctattgggagatatttgtttaattaatatttaaaatgccattc
aatcgcacactcaacttttatctatttgcctgaaagaagagctgcacttg
aatatggtcattaaggatgtgctttgtatgctacactattgatttttcta
tgaagaaaaattattacagcatgtgtgtctatcatatcagggagtagctg
gataaacccgcttatcgattatcacgaaatattccatataactaaaaagg
atgacaaagttcagctggcataaaagacaaaaaaatggggatgttttaag
ttagtgtgttctttaatgttttgtagaaagaattaatttgttctgtacta
cttaggtgattatatgtgtacattgattcattcatatttctcttggattt
tctacacaccacaaaaccaaactataaaacacatacattttcattaattc
ttggagttttcaatttcttataaaggtttcttgtgtgaaattttaaagta
tatattttttaattaatttgtgtactttcctcttgttaatttttaaaata
aaattagattcttttctaatacaatatatcttgattatagatttccctcc
ctctgccccttccatttcctccccatctccctttcttctctggatcttgc
ctccctttctgctcttcattgaagaatataaataccattatgattgaagc
caaaaccatgc
gaattcatttcaccccaaatctgcgctcctgaaaagtgaactgagcctcc
cacgcggggtttctgccacctataagtggccagtccccaagcctagcctc
tggccctcgccccttatcaacttctctttgcttcagcaaggctgatcaac
cattactttctgctccaaagtccctggcgtaaagtgagactttggggagc
ctcggtgaatgcgcttctcccccagcgcgctagacccaagggctcctttt
cattaaggcaataaagttcaatttgcccggctccttctatgccagaggag
acttttcaatgcaccgagttctccgtcccagcgcgctcaaaacatcctgt
tcattccagcccggatccttgaaggacatcagtctacataaaggggacct
actcctctcctttcaaagtgccccaaacctcgtgcgtgtgcgcgcgcaca
ctcatacccacactctctcacacacaatgccatccacgcgctgtcaaagt
ctgtcactgcctaagccagaaggcaggagctgaagccgcaccggcgcgag
catcagcctggccaggcagcagaactcgctgtctaggtcccaaacatcct
tgtccggatgctccggccactaggagcttgtaagcaccccaagattacaa
ggcggtctggagagccgcaccttacccgcgggacgcgccgtctctggccg
ttctgctggcccgcgggccacagggacgctgcagccggggtcccgaagat
gcttattctccgctgccgctgcccgggatccctggcgccagcatcacttc
tcccccgcctccgcctcctcgtgctcagctcgcgcgcccgcccttcccgg
cggcctcctgcaagcccgcggtgctggcagcgcgcggtggacggcggcgg
aggcgcagcagcgcccgcgcgggctcgctcagctgcaccagccgagcagc
cgcggcggcagccggagcacggagcccggttggcctccccggcgacggtt
ctggcctcggcgactgacacgccggaagctaatcgccgcctctgccccgg
cgcgggggggagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_67267871_67268977
seq2: B6Ng01-123M23.b_46_1156

seq1  GAATTCTAGAAAAAGAATCTCTAAAGTGGTAATAGAAGAATAAATTACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAAAAAGAATCTCTAAAGTGGTAATAGAAGAATAAATTACCA  50

seq1  TAAATACATTTAAGCTTCGGCTCCATGACCAACATATTTGGTACTAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACATTTAAGCTTCGGCTCCATGACCAACATATTTGGTACTAAAAG  100

seq1  ACTAGAAAAATAGAAAGAATAAGTTTCCCAATACTTATAGACATCAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAAAATAGAAAGAATAAGTTTCCCAATACTTATAGACATCAACAT  150

seq1  ATCAATATGGGACTATCAATAAAAAAATCAAACATAAAATTAGGTAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATATGGGACTATCAATAAAAAAATCAAACATAAAATTAGGTAATGG  200

seq1  TTAAGAACCAAATCGAAATTAGAAACAGATAAAATCGTAGGAAAAACGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACCAAATCGAAATTAGAAACAGATAAAATCGTAGGAAAAACGTG  250

seq1  AACAGCGCTATTAATAATTAAAGCAATAAACATTACCACAATCCTCAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCGCTATTAATAATTAAAGCAATAAACATTACCACAATCCTCAGAC  300

seq1  ACAGAGTTTCTCATTTGAAGAGCAATGACGTAGAACTGTTTGTTAATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTTTCTCATTTGAAGAGCAATGACGTAGAACTGTTTGTTAATAAT  350

seq1  GTGTGGTTGTGGAATCTGTACAGAAATGTCTTTGTACTAGTACAAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTTGTGGAATCTGTACAGAAATGTCTTTGTACTAGTACAAAAATA  400

seq1  GGATCATCTATTGGGAGATATTTGTTTAATTAATATTTAAAATGCCATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATCTATTGGGAGATATTTGTTTAATTAATATTTAAAATGCCATTC  450

seq1  AATCGCACACTCAACTTTTATCTATTTGCCTGAAAGAAGAGCTGCACTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGCACACTCAACTTTTATCTATTTGCCTGAAAGAAGAGCTGCACTTG  500

seq1  AATATGGTCATTAAGGATGTGCTTTGTATGCTACACTATTGATTTTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGTCATTAAGGATGTGCTTTGTATGCTACACTATTGATTTTTCTA  550

seq1  TGAAGAAAAATTATTACAGCATGTGTGTCTATCATATCAGGGAGTAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAAATTATTACAGCATGTGTGTCTATCATATCAGGGAGTAGCTG  600

seq1  GATAAACCCGCTTATCGATTATCACGAAATATTCCATATAACTAAAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACCCGCTTATCGATTATCACGAAATATTCCATATAACTAAAAAGG  650

seq1  ATGACAAAGTTCAGCTGGCATAAAAGACAAAAAAATGGGGATGTTTTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAAGTTCAGCTGGCATAAAAGACAAAAAAATGGGGATGTTTTAAG  700

seq1  TTAGTGTGTTCTTTAATGTTTTGTAGAAAGAATTAATTTGTTCTGTACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTGTTCTTTAATGTTTTGTAGAAAGAATTAATTTGTTCTGTACTA  750

seq1  CTTAGGTGATTATATGTGTACATTGATTCATTCATATTTCTCTTGGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTGATTATATGTGTACATTGATTCATTCATATTTCTCTTGGATTT  800

seq1  TCTACACACCACAAAACCAAACTATAAAACACATACATTTTCATTAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACACCACAAAACCAAACTATAAAACACATACATTTTCATTAATTC  850

seq1  TTGGAGTTTTCAATTTCTTAT-AAGGTTTCTTGTGTGAAATTTTAAAAGT  899
      ||||||||||||||||||||| |||||||||||||||||||||| |||||
seq2  TTGGAGTTTTCAATTTCTTATAAAGGTTTCTTGTGTGAAATTTT-AAAGT  899

seq1  ATATATTTTTTAATTAATTTGTGTACTTTCCTCTTGTTAATTTTTTAAAA  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATATATTTTTTAATTAATTTGTGTACTTTCCTCTTGTTAA-TTTTTAAAA  948

seq1  TAAAAATTAGATTCTTTTCTAATACAATATATCTTGATTATAGATTTCCC  999
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AAAATTAGATTCTTTTCTAATACAATATATCTTGATTATAGATTTCCC  997

seq1  TCCCTCTGCCCCTTCCATTTCCTCCCCCATCTCCC-TTCTTCTCTGGATC  1048
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  TCCCTCTGCCCCTTCCATTTCCT-CCCCATCTCCCTTTCTTCTCTGGATC  1046

seq1  T--GCTCCCTTTCTGTCTC-TCATTAGAGAATA-AAATA-CAATATGA-T  1092
      |   ||||||||||| ||| |||||  |||||| ||||| || ||||| |
seq2  TTGCCTCCCTTTCTG-CTCTTCATTGAAGAATATAAATACCATTATGATT  1095

seq1  GAAG-CAAAAACATGC  1107
      |||| ||||| |||||
seq2  GAAGCCAAAACCATGC  1111

seq1: chr2_67403699_67404766
seq2: B6Ng01-123M23.g_66_1130 (reverse)

seq1  TCTCCCCCCGCCGCG-CGGGGC-GAGGCGGCGATTGGCTGCCGGGCGTTG  48
      |||| |||| ||||| |||||| |||||||||||| ||| || |||| ||
seq2  TCTCTCCCCCCCGCGCCGGGGCAGAGGCGGCGATTAGCTTCC-GGCG-TG  48

seq1  TCAGTCGCCGAGGCCAGAACCGTCGCCGGGGAAGCGCAACCCGGCTCCGG  98
      |||||||||||||||||||||||||||||||| || ||||| |||||| |
seq2  TCAGTCGCCGAGGCCAGAACCGTCGCCGGGGAGGC-CAACCGGGCTCC-G  96

seq1  TGCTCCGGCTGCCGCCGCGGCTGCTCGGCTGGTGCAGCTGAGCGAGCCCG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCGGCTGCCGCCGCGGCTGCTCGGCTGGTGCAGCTGAGCGAGCCCG  146

seq1  CGCGGGCGCCGCTGCCGCCTCCGCCGCCGTCCACCGCGCGCTGCCAGCAC  198
      ||||||||| |||| |||||||||||||||||||||||||||||||||||
seq2  CGCGGGCGCTGCTG-CGCCTCCGCCGCCGTCCACCGCGCGCTGCCAGCAC  195

seq1  CGCGGGGCTTGCAGGAGGCCGCCGGGAGGGGCGGGCGCGCGAGCTGAGCA  248
      ||| ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CGC-GGGCTTGCAGGAGGCCGCCGGGAAGGGCGGGCGCGCGAGCTGAGCA  244

seq1  CGAGGAGGCGGAGGCGGGGGAGAAGTGATGCTGGCGCCAGGGAT-CCGGG  297
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CGAGGAGGCGGAGGCGGGGGAGAAGTGATGCTGGCGCCAGGGATCCCGGG  294

seq1  CAGCGGCAGCGGAGAATAAGCATCTTCGGGACCCCGGCTGCAGCGTCCCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGCAGCGGAGAATAAGCATCTTCGGGACCCCGGCTGCAGCGTCCCT  344

seq1  GTGGCCCGCGGGCCAGCAGAACGGCCAGAGACGGCGCGTCCCGCGGGTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCGCGGGCCAGCAGAACGGCCAGAGACGGCGCGTCCCGCGGGTAA  394

seq1  GGTGCGGCTCTCCAGACCGCCTTGTAATCTTGGGGTGCTTACAAGCTCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCGGCTCTCCAGACCGCCTTGTAATCTTGGGGTGCTTACAAGCTCCT  444

seq1  AGTGGCCGGAGCATCCGGACAAGGATGTTTGGGACCTAGACAGCGAGTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCGGAGCATCCGGACAAGGATGTTTGGGACCTAGACAGCGAGTTC  494

seq1  TGCTGCCTGGCCAGGCTGATGCTCGCGCCGGTGCGGCTTCAGCTCCTGCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCTGGCCAGGCTGATGCTCGCGCCGGTGCGGCTTCAGCTCCTGCC  544

seq1  TTCTGGCTTAGGCAGTGACAGACTTTGACAGCGCGTGGATGGCATTGTGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTTAGGCAGTGACAGACTTTGACAGCGCGTGGATGGCATTGTGT  594

seq1  GTGAGAGAGTGTGGGTATGAGTGTGCGCGCGCACACGCACGAGGTTTGGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAGTGTGGGTATGAGTGTGCGCGCGCACACGCACGAGGTTTGGG  644

seq1  GCACTTTGAAAGGAGAGGAGTAGGTCCCCTTTATGTAGACTGATGTCCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTGAAAGGAGAGGAGTAGGTCCCCTTTATGTAGACTGATGTCCTT  694

seq1  CAAGGATCCGGGCTGGAATGAACAGGATGTTTTGAGCGCGCTGGGACGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATCCGGGCTGGAATGAACAGGATGTTTTGAGCGCGCTGGGACGGA  744

seq1  GAACTCGGTGCATTGAAAAGTCTCCTCTGGCATAGAAGGAGCCGGGCAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCGGTGCATTGAAAAGTCTCCTCTGGCATAGAAGGAGCCGGGCAAA  794

seq1  TTGAACTTTATTGCCTTAATGAAAAGGAGCCCTTGGGTCTAGCGCGCTGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTTATTGCCTTAATGAAAAGGAGCCCTTGGGTCTAGCGCGCTGG  844

seq1  GGGAGAAGCGCATTCACCGAGGCTCCCCAAAGTCTCACTTTACGCCAGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGCGCATTCACCGAGGCTCCCCAAAGTCTCACTTTACGCCAGGG  894

seq1  ACTTTGGAGCAGAAAGTAATGGTTGATCAGCCTTGCTGAAGCAAAGAGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGAGCAGAAAGTAATGGTTGATCAGCCTTGCTGAAGCAAAGAGAA  944

seq1  GTTGATAAGGGGCGAGGGCCAGAGGCTAGGCTTGGGGACTGGCCACTTAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATAAGGGGCGAGGGCCAGAGGCTAGGCTTGGGGACTGGCCACTTAT  994

seq1  AGGTGGCAGAAACCCCGCGTGGGAGGCTCAGTTCACTTTTCAGGAGCGCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCAGAAACCCCGCGTGGGAGGCTCAGTTCACTTTTCAGGAGCGCA  1044

seq1  GATTTGGGGTGAAATGAATTC  1068
      |||||||||||||||||||||
seq2  GATTTGGGGTGAAATGAATTC  1065