BAC Information

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BAC

Clone NameB6Ng01-123O14
Chromosome2 (Build37)12 (Build37)
Map Location 75,642,012 - 75,642,43536,063,582 - 36,064,681
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik
Downstream geneLOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123O14.bB6Ng01-123O14.g
ACCDH926954DH926955
length3951,092
definitionDH926954|Mus musculus domesticus DNA, BAC clone: B6Ng01-123O14, 5' end.DH926955|Mus musculus domesticus DNA, BAC clone: B6Ng01-123O14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(75,642,012 - 75,642,435)(36,063,582 - 36,064,681)
sequence
gaattcacagagactgaaggagtgatagagggcctactcaggtctgcacc
aggtcctctgcatatataccataactctcagtttagtacttttctgggac
tcctgagtgtgtaaaggggtgcatctctgattctggtgccttcagtgggg
gttcttttatttttctgttgtcttgtcttttccaactttgatattatagc
ttttgctttattttgttatattttattttgttaaaaatatttttaaagag
ttaccttcttaaggaacactagagggagaaaattagtcttctccagttgg
ttatcaaatatcaaatgatcgttcctgaaaacatacatatgtaacattta
aaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagaga
gaattcagtaaacaagtagagagaatgagacattctgttgatgttcagcc
tcttcctcagccacttctgtcattgtccaatgggcctatgaataaaatgg
acacagtggtagagatgggtgttacttgtgggctcaacaacatgaattgt
cactcaccaagaatgatctgggtacagctacttctgagtgcaagttctgc
caacagtcaagatcaacactgaacactagatatggcaccatttcccagag
tgaccagccagtgacttggtgtcaggtggatttcattgatctatttcccc
catgaaaaagacaatgctttctccttactggagtatatacttattctagt
tgtagatttgtctttcctatatgtggtgttatgctaaacaaacaaacaaa
acaaacaaacaaaagcccaccacagtgacttaaagaaatacatgaaattt
accataataaaactttttcaaagtttgtgtgtctgtaatatatgttgaca
tgttcacacatgtttcctacctgtgtgtgtagatccatatacacattagg
tttgtcatcttcagttatcacagtcaaccttattcactgcagcagggtct
ctcagtcaagttcagagctcatcagtaggattaatctaggtaggcagctt
gttttagagatctcctgtctctgtcttgggagacctgtaatttcaagcag
actgttgtatttgcatacttgaattctttgagtctgagtgctgaattttg
agcactaattttgcacccatgcattttaagcactgtgctatcctcctagc
ccctcacaactctttttccttgtagtttagcagaacacatggctgatttt
tttttatcttctatagactagtatgcatatatggaagatttctatgatat
aaaaaaagctaaatgatttttaaaaaaattcctttagacatagtttaagt
ctggtcaaacacatgcttttacaaataggttggcatatgcatttttgacc
tagtcttggaggatatccttttcaccatattcacatcagggacaggcctt
ggggacctgggttctagaatctggacatcccctttagaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_75642012_75642435
seq2: B6Ng01-123O14.b_237_440 (reverse)

seq1  TCTCTCACACACACACACACATGCACATGCACACACTCTCTCTCTCTCAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACACACACACTCTCTCACACACATACACTCTCTCTCACACACTCTCTCTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  ACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACAC  150
                                            ||||||||||||
seq2  --------------------------------------TCTCTCACACAC  12

seq1  ACACACACCCCACTATCTCACACACACACA-AAACTATGTAGTCCTTTAT  199
      |||||||| |      | |||||||||||| | | | |  | |  |  ||
seq2  ACACACACAC-----ACACACACACACACACACATTTTTAAATGTTACAT  57

seq1  ATGTTGGTCAACTTCTCCTGAACAGGAGGCCCTGTTTCCTGGAGTGGTTG  249
      ||||     |  || ||  ||||  ||         || |    |  |||
seq2  ATGT-----ATGTTTTCAGGAAC--GA---------TCATTTGATATTTG  91

seq1  AAAAGCAAACCTACTCTCACTCTATTGGAGAAAACTAATTTTCTCACTCC  299
      | || ||                | ||||||| |||||||||||| ||| 
seq2  ATAACCA----------------ACTGGAGAAGACTAATTTTCTCCCTC-  124

seq1  CAGAAGGCATCAGTGACAGCTCAATTATTAACCTTTAGCCTAGGGGTTAG  349
                 ||||            ||  |||| ||          ||
seq2  ----------TAGTG------------TT--CCTTAAG---------AAG  141

seq1  GTTTTCTTTCATTCATTCATTCATTCATTCATTCATCCATTCATTTAAAA  399
      |       | | || || |   |   |||  || | | |       || |
seq2  G-------TAACTCTTTAA---AAATATT--TTTAACAA-------AATA  172

seq1  ACTTATAACAAAATAAA-------ATATAATA  424
      |  ||||||||||||||        |||||||
seq2  AAATATAACAAAATAAAGCAAAAGCTATAATA  204

seq1: chr12_36063582_36064681
seq2: B6Ng01-123O14.g_70_1161

seq1  GAATTCAGTAAACAAGTAGAGAGAATGAGACATTCTGTTGATGTTCAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAACAAGTAGAGAGAATGAGACATTCTGTTGATGTTCAGCC  50

seq1  TCTTCCTCAGCCACTTCTGTCATTGTCCAATGGGCCTATGAATAAAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCAGCCACTTCTGTCATTGTCCAATGGGCCTATGAATAAAATGG  100

seq1  ACACAGTGGTAGAGATGGGTGTTACTTGTGGGCTCAACAACATGAATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTGGTAGAGATGGGTGTTACTTGTGGGCTCAACAACATGAATTGT  150

seq1  CACTCACCAAGAATGATCTGGGTACAGCTACTTCTGAGTGCAAGTTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACCAAGAATGATCTGGGTACAGCTACTTCTGAGTGCAAGTTCTGC  200

seq1  CAACAGTCAAGATCAACACTGAACACTAGATATGGCACCATTTCCCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTCAAGATCAACACTGAACACTAGATATGGCACCATTTCCCAGAG  250

seq1  TGACCAGCCAGTGACTTGGTGTCAGGTGGATTTCATTGATCTATTTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGCCAGTGACTTGGTGTCAGGTGGATTTCATTGATCTATTTCCCC  300

seq1  CATGAAAAAGACAATGCTTTCTCCTTACTGGAGTATATACTTATTCTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAAAGACAATGCTTTCTCCTTACTGGAGTATATACTTATTCTAGT  350

seq1  TGTAGATTTGTCTTTCCTATATGTGGTGTTATGCTAAACAAACAAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATTTGTCTTTCCTATATGTGGTGTTATGCTAAACAAACAAACAAA  400

seq1  ACAAACAAACAAAAGCCCACCACAGTGACTTAAAGAAATACATGAAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAAAGCCCACCACAGTGACTTAAAGAAATACATGAAATTT  450

seq1  ACCATAATAAAACTTTTTCAAAGTTTGTGTGTCTGTAATATATGTTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAATAAAACTTTTTCAAAGTTTGTGTGTCTGTAATATATGTTGACA  500

seq1  TGTTCACACATGTTTCCTACCTGTGTGTGTAGATCCATATACACATTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACACATGTTTCCTACCTGTGTGTGTAGATCCATATACACATTAGG  550

seq1  TTTGTCATCTTCAGTTATCACAGTCAACCTTATTCACTGCAGCAGGGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATCTTCAGTTATCACAGTCAACCTTATTCACTGCAGCAGGGTCT  600

seq1  CTCAGTCAAGTTCAGAGCTCATCAGTAGGATTAATCTAGGTAGGCAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCAAGTTCAGAGCTCATCAGTAGGATTAATCTAGGTAGGCAGCTT  650

seq1  GTTTTAGAGATCTCCTGTCTCTGTCTTGGGAGACCTGTAATTTCAAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGAGATCTCCTGTCTCTGTCTTGGGAGACCTGTAATTTCAAGCAG  700

seq1  ACTGTTGTATTTGCATACTTGAATTCTTTGAGTCTGAGTGCTGAATTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGTATTTGCATACTTGAATTCTTTGAGTCTGAGTGCTGAATTTTG  750

seq1  AGCACTAATTTTGCACCCATGCATTTTAAGCACTGTGCTATCCTCCTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTAATTTTGCACCCATGCATTTTAAGCACTGTGCTATCCTCCTAGC  800

seq1  CCCTCACAACTCTTTTTCCTTGTAGTTTAGCAGAACACATGGCTGATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACAACTCTTTTTCCTTGTAGTTTAGCAGAACACATGGCTGATTTT  850

seq1  TTTTTATCTTCTATAGACTAGTATGCATATATGGAAGATTTCTATGATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTTTATCTTCTATAGACTAGTATGCATATATGGAAGATTTCTATGA-TA  899

seq1  TAAAAAAAGCTAAATGATTTTTAAAAAAAAATACCTTTAAGGACATAGTT  950
      ||||||||||||||||||||||  |||||||| ||||||  |||||||||
seq2  TAAAAAAAGCTAAATGATTTTT--AAAAAAATTCCTTTA--GACATAGTT  945

seq1  TAAGTCTGGTCAAACACATGCTTTTACAATTAGTGTTTGGCATATGCATT  1000
      ||||||||||||||||||||||||||||| ||  | ||||||||||||||
seq2  TAAGTCTGGTCAAACACATGCTTTTACAAATA--GGTTGGCATATGCATT  993

seq1  TTTGA-CTAGTCTTGGAGAATATCCTTTTCAACTAATTTCACATCA-GGA  1048
      ||||| |||||||||||| ||||||||||| || |  ||||||||| |||
seq2  TTTGACCTAGTCTTGGAGGATATCCTTTTC-ACCATATTCACATCAGGGA  1042

seq1  CA-GCCCTGGGGACACTGGTGTCTAGGAATCCTGGACATCCCTTTTAGAA  1097
      || ||| ||||||| ||||  |||| |||| ||||||||||| |||||||
seq2  CAGGCCTTGGGGAC-CTGGGTTCTA-GAAT-CTGGACATCCCCTTTAGAA  1089

seq1  TAT  1100
      |||
seq2  TAT  1092