BAC Information

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BAC

Clone NameB6Ng01-125B02
Chromosome2 (Build37)
Map Location 166,710,169 - 166,872,539
singlet/doubletdoublet
Overlap geneArfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105
Upstream genePrkcbp1, LOC546780, Ncoa3, Sulf2, LOC670775, Ppia-ps2_2197.1, BC067047, Trp53rk
Downstream gene1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125B02.bB6Ng01-125B02.g
ACCDH927811DH927812
length810584
definitionDH927811|Mus musculus domesticus DNA, BAC clone: B6Ng01-125B02, 5' end.DH927812|Mus musculus domesticus DNA, BAC clone: B6Ng01-125B02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,710,169 - 166,711,302)(166,871,958 - 166,872,539)
sequence
gaattcacatgccaggaaaacattctagcacagaacggagcctcggctcc
tcaaaagcgggaacattctgtgtagaggaatgttctgtagttgtagactg
ttacacccatgtttaaaaactagaagacagctgctttctaactttctctc
actacagctatgcagaactccacccatcttagttctctcatgcattggga
gaaagtcttttattttaccatagtggatcatgaatcagccaatacttgtg
agttgcccaaagccctggagttggagacacaaggtagatggagtcagact
tcagtggcacaagtgtcactgtggatgtaaacagggaagtcaggaggaag
aactctgagcagtgaaggctttaccaccccacagagcacttcctcagacc
ctccccaggagtgtgaatcaaatccagaccctcatgggtccagtacccta
aagagcggacacagagaaatgggacatgcagaaggccacactggaaaaac
agtggcccagaaactaagaatttagaagcgctctcctgcccaagctgagg
tgagcctgtcacagagggtggctggctggcattggcaccctgcccaccac
atgcgagggagcagtgcacactgcgatgcccgagctgtggctgacagtgg
aacttgctgatgtcccaggatctgcagtcagctctcagcagaccttgcga
ttccttcctttccgttccaattttccttaatttcccttttttccccattc
ttctttctttcttcctctctctctctctctctctctctctccctctccct
ctccccctcc
gaattctcatgactgacaattcttccttcacaggatgctgactgggtctg
tgtgcagccctcgaagcactccatgattcttgaatggctggggcttggtg
tgggctccttcactcagagtgcatctccagcaggacctgagaacacaggt
aggagggtcatgtgacccaagacaccgtcagctggagtatagtaaaagcc
agaacgacctgactcagaatgcagggtccatacatgacaatctgcgtcag
atagcagaggacttaacaggacagcaaggcccagactgatgggcacaatt
tggagagtactgttgttgagtacacacaagggaaatgcttgttagaaact
agagagtcacagctgagtgcttgcctggcatatataaagctgtaggtggt
tccatccttggcaccctgaaaccaggcatgctggcacatgccgataagcc
caggattcagaggtacaggcaggcggatcacaaattcaaggtcatcctta
cctacataataagttaaagtcaggggtgatgacatatatattttttgttt
tgttttttttggagtttttttgttttttggtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_166710169_166711302
seq2: B6Ng01-125B02.b_50_859

seq1  GAATTCACATGCCAGGAAAACATTCTAGCACAGAACGGAGCCTCGGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGCCAGGAAAACATTCTAGCACAGAACGGAGCCTCGGCTCC  50

seq1  TCAAAAGCGGGAACATTCTGTGTAGAGGAATGTTCTGTAGTTGTAGACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCGGGAACATTCTGTGTAGAGGAATGTTCTGTAGTTGTAGACTG  100

seq1  TTACACCCATGTTTAAAAACTAGAAGACAGCTGCTTTCTAACTTTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCCATGTTTAAAAACTAGAAGACAGCTGCTTTCTAACTTTCTCTC  150

seq1  ACTACAGCTATGCAGAACTCCACCCATCTTAGTTCTCTCATGCATTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGCTATGCAGAACTCCACCCATCTTAGTTCTCTCATGCATTGGGA  200

seq1  GAAAGTCTTTTATTTTACCATAGTGGATCATGAATCAGCCAATACTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCTTTTATTTTACCATAGTGGATCATGAATCAGCCAATACTTGTG  250

seq1  AGTTGCCCAAAGCCCTGGAGTTGGAGACACAAGGTAGATGGAGTCAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCCAAAGCCCTGGAGTTGGAGACACAAGGTAGATGGAGTCAGACT  300

seq1  TCAGTGGCACAAGTGTCACTGTGGATGTAAACAGGGAAGTCAGGAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGCACAAGTGTCACTGTGGATGTAAACAGGGAAGTCAGGAGGAAG  350

seq1  AACTCTGAGCAGTGAAGGCTTTACCACCCCACAGAGCACTTCCTCAGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGAGCAGTGAAGGCTTTACCACCCCACAGAGCACTTCCTCAGACC  400

seq1  CTCCCCAGGAGTGTGAATCAAATCCAGACCCTCATGGGTCCAGTACCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGGAGTGTGAATCAAATCCAGACCCTCATGGGTCCAGTACCCTA  450

seq1  AAGAGCGGACACAGAGAAATGGGACATGCAGAAGGCCACACTGGAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCGGACACAGAGAAATGGGACATGCAGAAGGCCACACTGGAAAAAC  500

seq1  AGTGGCCCAGAAACTAAGAATTTAGAAGCGCTCTCCTGCCCAAGCTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCCAGAAACTAAGAATTTAGAAGCGCTCTCCTGCCCAAGCTGAGG  550

seq1  TGAGCCTGTCACAGAGGGTGGCTGGCTGGCATTGGCACCCTGCCCACCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGTCACAGAGGGTGGCTGGCTGGCATTGGCACCCTGCCCACCAC  600

seq1  ATGCGAGGGAGCAGTGCACACTGCGATGCCCGAGCTGTGGCTGACAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGAGGGAGCAGTGCACACTGCGATGCCCGAGCTGTGGCTGACAGTGG  650

seq1  AACTTGCTGATGTCCCAGGATCTGCAGTCAGCTCTCAGCAGACCTTGCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCTGATGTCCCAGGATCTGCAGTCAGCTCTCAGCAGACCTTGCGA  700

seq1  TTCCTTCCTTTCCGTTCCAATTTTCCTTAATTTCCC-TTTTTCCCCATTC  749
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTCCTTCCTTTCCGTTCCAATTTTCCTTAATTTCCCTTTTTTCCCCATTC  750

seq1  TTCTTTCTTTCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCCT  800

seq1  CTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCTCTCTCTTTCTCTCCCT  849
      ||||| ||||                                        
seq2  CTCCCCCTCC----------------------------------------  810

seq1  TTGTTGTTTCATAACCATATTTTTGACAGACATTTCCTGACATTTTATTT  899
                                                        
seq2  --------------------------------------------------  810

seq1  AAACTTGCAGTTCAACCCCAATGCTCCTCTCTGCCCTGTCATGGCAGCAG  949
                                                        
seq2  --------------------------------------------------  810

seq1  GCGTCACTCTTAGGTCTTAGCTCCAGTGCTCAGGATGAGGAGGCAGGGAT  999
                                                        
seq2  --------------------------------------------------  810

seq1  TTCATCCATGCCCTGCCGCAGCACCGAGAAGGAGAAGCGCTGGGCACCCA  1049
                                                        
seq2  --------------------------------------------------  810

seq1  GGAGGAGCTCAGTGAAAAGCGCTAAGTCACCGTCAGGGTTAATCTTTGTC  1099
                                                        
seq2  --------------------------------------------------  810

seq1  ATCTGCTACAGATCAGAAACTGCTGGCCAGCCTCC  1134
                                         
seq2  -----------------------------------  810

seq1: chr2_166871958_166872539
seq2: B6Ng01-125B02.g_69_652 (reverse)

seq1  AAAACCAAAAAAC-AAAAAACTCC-AACAAAACAAAACAAAAAATATATA  48
      ||||||||||||| |||||||||| || ||||||||||||||||||||||
seq2  AAAACCAAAAAACAAAAAAACTCCAAAAAAAACAAAACAAAAAATATATA  50

seq1  TGTCATCACCCCTGACTTTAACTTATTATGTAGGTAAGGATGACCTTGAA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCACCCCTGACTTTAACTTATTATGTAGGTAAGGATGACCTTGAA  100

seq1  TTTGTGATCCGCCTGCCTGTACCTCTGAATCCTGGGCTTATCGGCATGTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATCCGCCTGCCTGTACCTCTGAATCCTGGGCTTATCGGCATGTG  150

seq1  CCAGCATGCCTGGTTTCAGGGTGCCAAGGATGGAACCACCTACAGCTTTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATGCCTGGTTTCAGGGTGCCAAGGATGGAACCACCTACAGCTTTA  200

seq1  TATATGCCAGGCAAGCACTCAGCTGTGACTCTCTAGTTTCTAACAAGCAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCCAGGCAAGCACTCAGCTGTGACTCTCTAGTTTCTAACAAGCAT  250

seq1  TTCCCTTGTGTGTACTCAACAACAGTACTCTCCAAATTGTGCCCATCAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTGTGTGTACTCAACAACAGTACTCTCCAAATTGTGCCCATCAGT  300

seq1  CTGGGCCTTGCTGTCCTGTTAAGTCCTCTGCTATCTGACGCAGATTGTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTTGCTGTCCTGTTAAGTCCTCTGCTATCTGACGCAGATTGTCA  350

seq1  TGTATGGACCCTGCATTCTGAGTCAGGTCGTTCTGGCTTTTACTATACTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGACCCTGCATTCTGAGTCAGGTCGTTCTGGCTTTTACTATACTC  400

seq1  CAGCTGACGGTGTCTTGGGTCACATGACCCTCCTACCTGTGTTCTCAGGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGACGGTGTCTTGGGTCACATGACCCTCCTACCTGTGTTCTCAGGT  450

seq1  CCTGCTGGAGATGCACTCTGAGTGAAGGAGCCCACACCAAGCCCCAGCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGAGATGCACTCTGAGTGAAGGAGCCCACACCAAGCCCCAGCCA  500

seq1  TTCAAGAATCATGGAGTGCTTCGAGGGCTGCACACAGACCCAGTCAGCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAATCATGGAGTGCTTCGAGGGCTGCACACAGACCCAGTCAGCAT  550

seq1  CCTGTGAAGGAAGAATTGTCAGTCATGAGAATTC  582
      ||||||||||||||||||||||||||||||||||
seq2  CCTGTGAAGGAAGAATTGTCAGTCATGAGAATTC  584