BAC Information

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BAC

Clone NameB6Ng01-127I19
Chromosome2 (Build37)
Map Location 83,859,586 - 83,860,558
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119
Downstream geneLOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127I19.bB6Ng01-127I19.g
ACCDH929637DH929638
length882972
definitionDH929637|Mus musculus domesticus DNA, BAC clone: B6Ng01-127I19, 5' end.DH929638|Mus musculus domesticus DNA, BAC clone: B6Ng01-127I19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctcagctgagccccatttttttaatggggttatttgattttctg
gagtccactttcttgagttctttatgtatattggatattagtcctctatc
tgatttaggataggtaaagatcctttccaaatctgttggtggcatttttg
ccttattgacagtgtcttttgccttacggaagctttgcaattttatgagg
tcccatttgtggattctcaatcttacagcacaagccactgttgttctatt
caggaatttttcccctgtgcccatatctttgaggcttttcccaacttctc
ctctataagtttcactgtctctggttttatgtggagttccttgatcgact
tagttttgaccttcgtacaaggagataggaatggatcaatttgcattctt
ctacatgttaactgccagttgtgccagtaccatttgttgaaaatgctgtc
ttttccccactggatggttttagctcccttgtcgaagatcaagtgaccat
aggtgtgtgggttcatttctgggtcttcaattctattccattggtctact
tctctgtcgctataccagcactatgcagttttttttttttttttttaatc
acaattgctctgtagtacagctttacgtcaggcacagtgattccaccaga
ggttcttttatccttgagaagagtttttgctatcctaggtttttttgtta
ttccagatgaatttgcagattgcccttttctaattcgttgaagaattgag
ttggaattttgatggggattgcattgaatctttagattgctttaggcaag
atagccatttttattatattgatccctgccaattccatgagcatggggag
gtctttccatcctctgaaaattttcctttaat
gaattcatacattacctcactatgaacttctaggtacttgatgctaaact
ctgattgcctatcttcaattccatgggcaatattattagcagaatattct
cctagcacagctctgccagcccttaacctgtggacacttttcctgtattt
gtgctcagctgaacacagtcagccacagcttcctgtgtggtggtgataac
acatgccaggttttgttgctggctgctagagtgaaggggaagacagtgcc
ctttgacctgagagaagtacaataaagcttatcagatcctcgccagacat
cattaaaggaagtgagttgaggaggccacctcggtaggaagcatatattt
tagaaagctgtcactgctaatcttctgtgttgtggcatgagacaattgtt
tctgcaaatatcagtccttccagacaatgacactcttctaaaggtacagt
gcagtaggcagtaagaaaagcataccaggccgtaaattactctcaccaga
acaatattctcatgataattattggaaaactaagtctgaactccattaag
taaaaagaacagtgactaatgcaaaattttataaactttaaaacagtagg
gtccagtgtgcgtatgcgtgtgcgtgtaagggtatttttcctgtatgcat
gtctgtataccacatgtgtgcctggtgccactggaggtcagaagagggga
ctggctcccctggaggaatagataattttgagcagctttattggtgctgg
gactcttcctctgaaagagcagaagctctcttaactgctgaaccatctct
ccagccttctacttaatttctaccgccgttaccttagacagtttcaatct
agtcctacagactttcagcttataagagactccagaatgttttttctctt
gtataaaacacttaatctttgaattgtgacaataaggttcaaatttgtta
tttaacaaaacattggaacttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_83859586_83860558
seq2: B6Ng01-127I19.g_68_1039 (reverse)

seq1  CTAGTT-CAATGTTT--GTAAATAACAAATTTTGAACTTATTGTCAACAT  47
      | |||| ||||||||   ||||||||||||||  | ||||||||| ||| 
seq2  CAAGTTCCAATGTTTTGTTAAATAACAAATTTGAACCTTATTGTC-ACAA  49

seq1  TTCAAAGATTGAGTTGTTTTATAC-AGAG-ACAAACATTCTGGAGTTCTC  95
      |||||||||| || |||||||||| |||| | ||||||||||||| ||||
seq2  TTCAAAGATTAAG-TGTTTTATACAAGAGAAAAAACATTCTGGAG-TCTC  97

seq1  TTAATAAGCTGAAAGTCTGTAGGACTAGATTGAAACTGTCTAAGGTAACG  145
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TT-ATAAGCTGAAAGTCTGTAGGACTAGATTGAAACTGTCTAAGGTAACG  146

seq1  GCGGTTAGAAATTAAGTAGAAGGCTGGAGAGATGGTTCAGCAGTTAAGAG  195
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGG-TAGAAATTAAGTAGAAGGCTGGAGAGATGGTTCAGCAGTTAAGAG  195

seq1  AGCTTCTTGCTCTTTCAGAGGAAGAGTCCCAGCACCAATAAAGCTGCTCA  245
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTC-TGCTCTTTCAGAGGAAGAGTCCCAGCACCAATAAAGCTGCTCA  244

seq1  AAATTATCTATTCCTCCAGGGGAGCCAGTCCCCTCTTCTGACCTCCAGTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATCTATTCCTCCAGGGGAGCCAGTCCCCTCTTCTGACCTCCAGTG  294

seq1  GCACCAGGCACACATGTGGTATACAGACATGCATACAGGAAAAATACCCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGGCACACATGTGGTATACAGACATGCATACAGGAAAAATACCCT  344

seq1  TACACGCACACGCATACGCACACTGGACCCTACTGTTTTAAAGTTTATAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGCACACGCATACGCACACTGGACCCTACTGTTTTAAAGTTTATAA  394

seq1  AATTTTGCATTAGTCACTGTTCTTTTTACTTAATGGAGTTCAGACTTAGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGCATTAGTCACTGTTCTTTTTACTTAATGGAGTTCAGACTTAGT  444

seq1  TTTCCAATAATTATCATGAGAATATTGTTCTGGTGAGAGTAATTTACGGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATAATTATCATGAGAATATTGTTCTGGTGAGAGTAATTTACGGC  494

seq1  CTGGTATGCTTTTCTTACTGCCTACTGCACTGTACCTTTAGAAGAGTGTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATGCTTTTCTTACTGCCTACTGCACTGTACCTTTAGAAGAGTGTC  544

seq1  ATTGTCTGGAAGGACTGATATTTGCAGAAACAATTGTCTCATGCCACAAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTGGAAGGACTGATATTTGCAGAAACAATTGTCTCATGCCACAAC  594

seq1  ACAGAAGATTAGCAGTGACAGCTTTCTAAAATATATGCTTCCTACCGAGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGATTAGCAGTGACAGCTTTCTAAAATATATGCTTCCTACCGAGG  644

seq1  TGGCCTCCTCAACTCACTTCCTTTAATGATGTCTGGCGAGGATCTGATAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCCTCAACTCACTTCCTTTAATGATGTCTGGCGAGGATCTGATAA  694

seq1  GCTTTATTGTACTTCTCTCAGGTCAAAGGGCACTGTCTTCCCCTTCACTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATTGTACTTCTCTCAGGTCAAAGGGCACTGTCTTCCCCTTCACTC  744

seq1  TAGCAGCCAGCAACAAAACCTGGCATGTGTTATCACCACCACACAGGAAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCCAGCAACAAAACCTGGCATGTGTTATCACCACCACACAGGAAG  794

seq1  CTGTGGCTGACTGTGTTCAGCTGAGCACAAATACAGGAAAAGTGTCCACA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTGACTGTGTTCAGCTGAGCACAAATACAGGAAAAGTGTCCACA  844

seq1  GGTTAAGGGCTGGCAGAGCTGTGCTAGGAGAATATTCTGCTAATAATATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGGGCTGGCAGAGCTGTGCTAGGAGAATATTCTGCTAATAATATT  894

seq1  GCCCATGGAATTGAAGATAGGCAATCAGAGTTTAGCATCAAGTACCTAGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGGAATTGAAGATAGGCAATCAGAGTTTAGCATCAAGTACCTAGA  944

seq1  AGTTCATAGTGAGGTAATGTATGAATTC  973
      ||||||||||||||||||||||||||||
seq2  AGTTCATAGTGAGGTAATGTATGAATTC  972