BAC Information

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BAC

Clone NameB6Ng01-129G11
Chromosome16 (Build37)2 (Build37)
Map Location 34,300,900 - 34,302,030142,776,709 - 142,777,696
singlet/doubletsingletsinglet
Overlap geneKalrn
Upstream geneZfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, LOC100043670
Downstream geneRopn1, Ccdc14, Mylk, Ptplb, Adcy5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129G11.bB6Ng01-129G11.g
ACCDH930994DH930995
length1,124939
definitionDH930994|Mus musculus domesticus DNA, BAC clone: B6Ng01-129G11, 5' end.DH930995|Mus musculus domesticus DNA, BAC clone: B6Ng01-129G11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(34,300,900 - 34,302,030)(142,776,709 - 142,777,696)
sequence
gaattcttgtgttttatacttgaaaatgtctgaatgagtggattatcacc
attaaaaatttaagtgagaaatttaaagtgctaattactgccacaggcaa
gtgagttttattcaaatatatgctacaaaggacggaaccagcaaggctga
gttaacatcacaggctgtgaaaaatgggaactgggagctggtgtcctaga
gtaacttgtatcatgtgtaaggaggtgtagagaggagttcttaaatgatg
gggcacaaggaaaggttgcagggagtaagtgtgactgttcttgtgacaca
gtttgaggatcagtcttaggctgccagtaggaacccaacataggaaaaat
ctctcccagggctctttcgatcagtgatgttccacactaaatgaaaaacc
cctaaagctggggtgtgtcttattctcactctcccccatggtgctgcagt
gtaagctaatggcatgagctccaatgtcaggtagacctgggtttgatgct
aatctgccatcaggagttggattagaagtgagttgacttaacctatctct
gcctcaatttccttctcagaaggatggagaccaaactgccacctacctca
tggtgttgggagattaaataggaaaaagcaagtgaagggactagatgtcc
aatcatatttcctcatacagatggcgaatcctgagctctgaacaatgtac
cttctaatcttttctttgatgtttgactgtcttcccaatgttcttatcat
aagattggtccatttctaatctgacaactcttcatatgtgtattctaaga
tctgattgtgtgcacaaggtgcatgagtctttcgctcttagactttaatc
tttccctgtgtaggaaaagttagttttccagcctcatcgtgttttggtca
ccttttgtgctgttgctaatcattttcaaggcaacccacaatgcacacct
tttactacataatattgctaatttggattatttaatggcttaactcactt
agtcttgattagggagcttatagtcacttcagtaatgaatgactgatatc
ttgtatttaaaaatactcccatctctttcaggcatttttttgcaacaaat
aaacaagtaattcttaaattttcc
gaattctttgttcagttctgagccccattttttaatggagttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtcct
ctatctgatttaggataggtaacgatcctttcccaatctattggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaagctttggagtttca
tgaggtcccatttgtcaattcttacagcacaagccattgctgttctattc
aggaatttttctcctgtgcccatatcttcaaggcttttccccactttctt
ctctataagtttcagtgtctctggttttatgtgaagttccctgatccact
tagatttgaccttagtacaaggagataggtatgaatcgattcgcattctt
ctacatgataacaaccagttgtgccagcaccatttgttgaaaatgctgtc
tttcttccactggatggttttagctcccttgtcccatgtcgaagatcaag
tgaccataggtgtgtgggttcatttctgggtggaagacccacttctaaac
ccactaagatgcttgttggcagtccaccaaggaacattagattaaggacc
tatgctccctgctctgaggaccactctagtgcagaagcttaataggacaa
gcaagaagaagccacagtcttaggtggtataaacaagtgcatgttattac
ctttgccatatttggctggtgaagaggtccactcatgtagaggtacacac
tcaagtagagggcatctctggtgccaggctcaggtctctttgacagaaac
atctaagaacttgggaattgcagatctctgtgtttcgctcactctctggt
ctcatctatgcctctttagctgccttgtgatcagcctccagtcttgaaat
atgtgctctctgctgattcctgtgctactcatcattctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_34300900_34302030
seq2: B6Ng01-129G11.b_44_1167

seq1  GAATTCTTGTGTTTTATACTTGAAAATGTCTGAATGAGTGGATTATCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTGTTTTATACTTGAAAATGTCTGAATGAGTGGATTATCACC  50

seq1  ATTAAAAATTTAAGTGAGAAATTTAAAGTGCTAATTACTGCCACAGGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATTTAAGTGAGAAATTTAAAGTGCTAATTACTGCCACAGGCAA  100

seq1  GTGAGTTTTATTCAAATATATGCTACAAAGGACGGAACCAGCAAGGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTTTATTCAAATATATGCTACAAAGGACGGAACCAGCAAGGCTGA  150

seq1  GTTAACATCACAGGCTGTGAAAAATGGGAACTGGGAGCTGGTGTCCTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACATCACAGGCTGTGAAAAATGGGAACTGGGAGCTGGTGTCCTAGA  200

seq1  GTAACTTGTATCATGTGTAAGGAGGTGTAGAGAGGAGTTCTTAAATGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTGTATCATGTGTAAGGAGGTGTAGAGAGGAGTTCTTAAATGATG  250

seq1  GGGCACAAGGAAAGGTTGCAGGGAGTAAGTGTGACTGTTCTTGTGACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAAGGAAAGGTTGCAGGGAGTAAGTGTGACTGTTCTTGTGACACA  300

seq1  GTTTGAGGATCAGTCTTAGGCTGCCAGTAGGAACCCAACATAGGAAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGGATCAGTCTTAGGCTGCCAGTAGGAACCCAACATAGGAAAAAT  350

seq1  CTCTCCCAGGGCTCTTTCGATCAGTGATGTTCCACACTAAATGAAAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCAGGGCTCTTTCGATCAGTGATGTTCCACACTAAATGAAAAACC  400

seq1  CCTAAAGCTGGGGTGTGTCTTATTCTCACTCTCCCCCATGGTGCTGCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGCTGGGGTGTGTCTTATTCTCACTCTCCCCCATGGTGCTGCAGT  450

seq1  GTAAGCTAATGGCATGAGCTCCAATGTCAGGTAGACCTGGGTTTGATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTAATGGCATGAGCTCCAATGTCAGGTAGACCTGGGTTTGATGCT  500

seq1  AATCTGCCATCAGGAGTTGGATTAGAAGTGAGTTGACTTAACCTATCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCCATCAGGAGTTGGATTAGAAGTGAGTTGACTTAACCTATCTCT  550

seq1  GCCTCAATTTCCTTCTCAGAAGGATGGAGACCAAACTGCCACCTACCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAATTTCCTTCTCAGAAGGATGGAGACCAAACTGCCACCTACCTCA  600

seq1  TGGTGTTGGGAGATTAAATAGGAAAAAGCAAGTGAAGGGACTAGATGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTGGGAGATTAAATAGGAAAAAGCAAGTGAAGGGACTAGATGTCC  650

seq1  AATCATATTTCCTCATACAGATGGCGAATCCTGAGCTCTGAACAATGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATTTCCTCATACAGATGGCGAATCCTGAGCTCTGAACAATGTAC  700

seq1  CTTCTAATCTTTTCTTTGATGTTTGACTGTCTTCCCAATGTTCTTATCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAATCTTTTCTTTGATGTTTGACTGTCTTCCCAATGTTCTTATCAT  750

seq1  AAGATTGGTCCATTTCTAATCTGACAACTCTTCATATGTGTATTCTAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGGTCCATTTCTAATCTGACAACTCTTCATATGTGTATTCTAAGA  800

seq1  TCTGATTGTGTGCACAAGGTGCATGAGTCTTTCGCTCTTAGACTTTAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTGTGTGCACAAGGTGCATGAGTCTTTCGCTCTTAGACTTTAATC  850

seq1  TTTCCCTGTGTAGGAAAAGTTAG-TTTCCAGCCTCATCGTGTTTTGGTCA  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTCCCTGTGTAGGAAAAGTTAGTTTTCCAGCCTCATCGTGTTTTGGTCA  900

seq1  CCTTTTGTTGCTGTTGCTAATCATTTTCAAGGCAACCCACAATGCACACC  949
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTG-TGCTGTTGCTAATCATTTTCAAGGCAACCCACAATGCACACC  949

seq1  TTTTACTACATAATATTGCTAA-TTGGATTATTTAATGGCTAAACTCACT  998
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  TTTTACTACATAATATTGCTAATTTGGATTATTTAATGGCTTAACTCACT  999

seq1  TAGTC-TGATTAGGGAGC-TATAGTCACTACAGTTAATGAATGACTGATT  1046
      ||||| |||||||||||| |||||||||| ||| |||||||||||||| |
seq2  TAGTCTTGATTAGGGAGCTTATAGTCACTTCAG-TAATGAATGACTGA-T  1047

seq1  ATC-TGTAATTAAAAAAATACTCACAATTCTCTTTCAGGCATTTTTTTGG  1095
      ||| |||| ||  |||||||||| ||  |||||||||||||||||||| |
seq2  ATCTTGTATTT--AAAAATACTCCCA--TCTCTTTCAGGCATTTTTTT-G  1092

seq1  CAAACAAAATAAACAGAGTAAAATCTATAATTTTCC  1131
      |||   ||||||||| ||| || |||  ||||||||
seq2  CAA--CAAATAAACA-AGT-AATTCTTAAATTTTCC  1124

seq1: chr2_142776709_142777696
seq2: B6Ng01-129G11.g_71_599 (reverse)

seq1  ACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTC-------GA  43
      |||||||||||||||||||||||||||||||||||||||||       ||
seq2  ACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACATGGGA  50

seq1  CAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACAGCATTTTCAACAATT  93
      |||||||||||||||||||||| ||||||||||||||||||||||||| |
seq2  CAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAAAT  100

seq1  GGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGGGAATCGATCCA  143
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  GGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATTCA  150

seq1  TACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCA  193
      ||| |||||||||||||||||||||||||||||||||||| |||||||||
seq2  TACCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAGGGAACTTCA  200

seq1  CATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCC  243
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CATAAAACCAGAGACACTGAAACTTATAGAGAAGAAAGTGGGGAAAAGCC  250

seq1  TTGAAGATATGGGCACAGGGGACAAATTCCTGAACAGAACAGCAATGGCT  293
      ||||||||||||||||||| || ||||||||||| |||||||||||||||
seq2  TTGAAGATATGGGCACAGGAGAAAAATTCCTGAATAGAACAGCAATGGCT  300

seq1  TGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAG  343
      |||||||||      |||||||||||||||||||| ||||||||||||||
seq2  TGTGCTGTA------AGAATTGACAAATGGGACCTCATGAAACTCCAAAG  344

seq1  TTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAG  393
       |||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAATAG  394

seq1  ATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCC  443
      |||||||||||||| |||||||||||||||||||||| ||||||||||||
seq2  ATTGGGAAAGGATCGTTACCTATCCTAAATCAGATAGAGGACTAATATCC  444

seq1  AACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCC  493
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACTC  494

seq1  CATTAAAAAATGGGGCTCACAAAACCATCCAGTGGAAGAAAGACAGCATT  543
      ||||||||||||||||||| ||            ||| |||||       
seq2  CATTAAAAAATGGGGCTCAGAA----------CTGAACAAAGAAT-----  529

seq1  TTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCG  593
                                                        
seq2  --------------------------------------------------  529

seq1  AATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCA  643
                                                        
seq2  --------------------------------------------------  529

seq1  AGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTG  693
                                                        
seq2  --------------------------------------------------  529

seq1  GGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAAG  743
                                                        
seq2  --------------------------------------------------  529

seq1  AGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGA  793
                                                        
seq2  --------------------------------------------------  529

seq1  AACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAGA  843
                                                        
seq2  --------------------------------------------------  529

seq1  CCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGG  893
                                                        
seq2  --------------------------------------------------  529

seq1  ACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAAT  943
                                                        
seq2  --------------------------------------------------  529

seq1  CAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAAT  988
                                                   
seq2  ---------------------------------------------  529