BAC Information

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BAC

Clone NameB6Ng01-129H17
Chromosome2 (Build37)8 (Build37)
Map Location 142,776,402 - 142,777,69858,136,871 - 58,138,050
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129H17.bB6Ng01-129H17.g
ACCDH931052DH931053
length1,0111,177
definitionDH931052|Mus musculus domesticus DNA, BAC clone: B6Ng01-129H17, 5' end.DH931053|Mus musculus domesticus DNA, BAC clone: B6Ng01-129H17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,402 - 142,777,698)(58,136,871 - 58,138,050)
sequence
gaattctttgttcagttctgagccccatttttaatggggttatttgattt
tctgaagtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgacggtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttctgtgaagttccttgat
ccacttagatttgaccttagtacaaggagataagtatggatcgatttgca
ttcttctacacggtaacaaccagttgtgccagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcgaagatcaagtg
accatagctgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtctctataccagtaccatgcagtttttatcacaattgct
ctgtagtaaagctttaggtctggtatggtgattccaccagaagttctttt
atccttgagaagactttttgccaacctaggttttttgttattccagacga
atttgcaaattggtccttccaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgatcctgccaatccatgagcatgggagtatatattttctat
aaagtagtaatttttatctttttttaaaaaattcacttctaatgcactac
aagtagcataatgtttcaaaagactagtacaaagcttcagtttgaatcat
caaggtaacaaaatattcaatagagaatctaaactgtagttagaatcaaa
tggattcatga
gaattcagtgttatgtaagttagtaagtctatgccccttagacatatgcc
ttctgtttgcaataataaaaaatatagttaaggtaagataaagtaataga
taaggatagttttatgaagttcaagttagtatattagtttcattttctta
ggagtttcttgagttgtttacaaaaaccagctctaaattcaccctttagg
aacatgaagtgtttataaagcaacttgtaaagtcaaattgaacagatttg
actttagatttatcttctgtttcggggtgagggatattcctaaattgtga
aatgatgagaggaaagaaaagagtaatggaggcggggcaaattaagacaa
agaagaaactatagagtgtgtttttccctattaaatttaaaagatatttc
tttgcatgaaaattacagaattgcactgtctcaactagtcattttcattt
tattatcacaaagaagaacatcattatttaagacttaataaatagaacta
ggtctgttgttactgagacataagaacctgttcatttaaaccactgcaac
ttcaaactgttaaagaatcttaatttgtacattttattaaaaataatctt
aaataacctttcaatcctgtctgaatctcagtgttataagctgtagaaaa
taattcttctatttcttttagttttcctttatcttttagactatcaattt
ttcagatgagtcagggttgtagattaatagaatttatagcatgagtcatg
aatctctctctctctctctctctctctctctctctctctctctccacaca
cacacacactcacacacacacactcacacacacacacacacacacagtac
aagaatccagcagttgtcagttactgaggttgaggtggatattcagatga
tcctcactatatactaagaatcttggaagaagtagtttctatgtcagtga
agaaatgatctcgctagtgaggaacagacagccgtctccattctattcat
actactctggttttccttggacatgtcactatttatcaacttttcatatt
acgtctttctctcgaaaccaacccttatggtgggcaccgggctagatttt
ttgagaaggatattgacttacgattttaaaccgtcggaaggttagaaatt
acgaggatttccctcttctcttttccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776402_142777698
seq2: B6Ng01-129H17.b_49_884 (reverse)

seq1  CTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTT  50

seq1  GCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTC  100

seq1  AATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAAC  150
      |||||||||||||||| |||||| |||||||||||||| |||||||||||
seq2  AATTCTTCAACGAATTGGAAGGACCAATTTGCAAATTCGTCTGGAATAAC  150

seq1  AAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAACCTCTGG  200
      |||||||||||| | ||||||||||||||||||||||||||||| |||||
seq2  AAAAAACCTAGGTTGGCAAAAAGTCTTCTCAAGGATAAAAGAACTTCTGG  200

seq1  TGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAA  250
      |||||||||||| || ||||||||||||||||||||||||||||||||||
seq2  TGGAATCACCATACCAGACCTAAAGCTTTACTACAGAGCAATTGTGATAA  250

seq1  AAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGA  300

seq1  ATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGA  350
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTGAAGACCCAGAAATGAACCCACACAGCTATGGTCACTTGATCTTCGA  350

seq1  CAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACAGCATTTTCAACAATT  400
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATT  400

seq1  GGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGGGAATCGATCCA  450
      ||||||||||||||||||||||| | ||||||||||||  ||||||||||
seq2  GGTGCTGGCACAACTGGTTGTTACCGTGTAGAAGAATGCAAATCGATCCA  450

seq1  TACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCA  500

seq1  CATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCC  550
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCC  550

seq1  TTGAAGATATGGGCACAGGGGACAAATTCCTGAACAGAACAGCAATGGCT  600
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCT  600

seq1  TGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAG  650

seq1  TTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAG  700

seq1  ATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCC  750

seq1  AACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCC  800

seq1  CATTAAAAAATGGGGCTCACAAAACCATCCAGTGGAAGAAAGACAGCATT  850
      |||| |||||||||||||| ||            ||| |||||    |||
seq2  CATT-AAAAATGGGGCTCAGAA----------CTGAACAAAGA----ATT  835

seq1  TTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCG  900
                                                        
seq2  C-------------------------------------------------  836

seq1  AATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCA  950
                                                        
seq2  --------------------------------------------------  836

seq1  AGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTG  1000
                                                        
seq2  --------------------------------------------------  836

seq1  GGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAAG  1050
                                                        
seq2  --------------------------------------------------  836

seq1  AGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGA  1100
                                                        
seq2  --------------------------------------------------  836

seq1  AACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAGA  1150
                                                        
seq2  --------------------------------------------------  836

seq1  CCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGG  1200
                                                        
seq2  --------------------------------------------------  836

seq1  ACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAAT  1250
                                                        
seq2  --------------------------------------------------  836

seq1  CAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1297
                                                     
seq2  -----------------------------------------------  836

seq1: chr8_58136871_58138050
seq2: B6Ng01-129H17.g_68_1244

seq1  GAATTCAGTGTTATGTAAGTTAGTAAGTCTATGCCCCTTAGACATATGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTTATGTAAGTTAGTAAGTCTATGCCCCTTAGACATATGCC  50

seq1  TTCTGTTTGCAATAATAAAAAATATAGTTAAGGTAAGATAAAGTAATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTGCAATAATAAAAAATATAGTTAAGGTAAGATAAAGTAATAGA  100

seq1  TAAGGATAGTTTTATGAAGTTCAAGTTAGTATATTAGTTTCATTTTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATAGTTTTATGAAGTTCAAGTTAGTATATTAGTTTCATTTTCTTA  150

seq1  GGAGTTTCTTGAGTTGTTTACAAAAACCAGCTCTAAATTCACCCTTTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTCTTGAGTTGTTTACAAAAACCAGCTCTAAATTCACCCTTTAGG  200

seq1  AACATGAAGTGTTTATAAAGCAACTTGTAAAGTCAAATTGAACAGATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAAGTGTTTATAAAGCAACTTGTAAAGTCAAATTGAACAGATTTG  250

seq1  ACTTTAGATTTATCTTCTGTTTCGGGGTGAGGGATATTCCTAAATTGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGATTTATCTTCTGTTTCGGGGTGAGGGATATTCCTAAATTGTGA  300

seq1  AATGATGAGAGGAAAGAAAAGAGTAATGGAGGCGGGGCAAATTAAGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGAGAGGAAAGAAAAGAGTAATGGAGGCGGGGCAAATTAAGACAA  350

seq1  AGAAGAAACTATAGAGTGTGTTTTTCCCTATTAAATTTAAAAGATATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAACTATAGAGTGTGTTTTTCCCTATTAAATTTAAAAGATATTTC  400

seq1  TTTGCATGAAAATTACAGAATTGCACTGTCTCAACTAGTCATTTTCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATGAAAATTACAGAATTGCACTGTCTCAACTAGTCATTTTCATTT  450

seq1  TATTATCACAAAGAAGAACATCATTATTTAAGACTTAATAAATAGAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCACAAAGAAGAACATCATTATTTAAGACTTAATAAATAGAACTA  500

seq1  GGTCTGTTGTTACTGAGACATAAGAACCTGTTCATTTAAACCACTGCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTTGTTACTGAGACATAAGAACCTGTTCATTTAAACCACTGCAAC  550

seq1  TTCAAACTGTTAAAGAATCTTAATTTGTACATTTTATTAAAAATAATCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTGTTAAAGAATCTTAATTTGTACATTTTATTAAAAATAATCTT  600

seq1  AAATAACCTTTCAATCCTGTCTGAATCTCAGTGTTATAAGCTGTAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACCTTTCAATCCTGTCTGAATCTCAGTGTTATAAGCTGTAGAAAA  650

seq1  TAATTCTTCTATTTCTTTTAGTTTTCCTTTATCTTTTAGACTATCAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTCTATTTCTTTTAGTTTTCCTTTATCTTTTAGACTATCAATTT  700

seq1  TTCAGATGAGTCAGGGTTGTAGATTAATAGAATTTATAGCATGAGTCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGAGTCAGGGTTGTAGATTAATAGAATTTATAGCATGAGTCATG  750

seq1  AATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCACACA  800

seq1  CACACACACACACACACACACACACACACACACACACACACACACAGTAC  850
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  CACACACACTCACACACACACACTCACACACACACACACACACACAGTAC  850

seq1  AAGAATCCAGCAGTTGTTCAGTTACTGAGGTTGAGGTTGGATATTTCAGA  900
      |||||||||||||||| ||||||||||||||||||| |||||| ||||||
seq2  AAGAATCCAGCAGTTG-TCAGTTACTGAGGTTGAGG-TGGATA-TTCAGA  897

seq1  TGATCCTCACTATATACT-AGAATCTT-GAAGAAGTAGGTTCTAATGTCA  948
      |||||||||||||||||| |||||||| |||||||||| |||| ||||||
seq2  TGATCCTCACTATATACTAAGAATCTTGGAAGAAGTAGTTTCT-ATGTCA  946

seq1  GTGAAGAAATGATCTCGCTAGTGAGAACAAGAACAAGCGTCTCCATCCTA  998
      ||||||||||||||||||||||||| |  || |||  ||||||||| |||
seq2  GTGAAGAAATGATCTCGCTAGTGAGGAACAG-ACAGCCGTCTCCATTCTA  995

seq1  TTCATTACTACTCTGGTTTTTCACTAGGACATGTCAACAATTAATCAAAC  1048
      |||| |||||||||||||||   || ||||||||| || ||| ||| |||
seq2  TTCA-TACTACTCTGGTTTT--CCTTGGACATGTC-ACTATTTATC-AAC  1040

seq1  TTTTCATATTCAGTCTTCTTCTCGAAAACCAATC--TCTAGTGTGCAACC  1096
      ||||||||||  |||||  ||||| ||||||| |  | | ||| ||| | 
seq2  TTTTCATATTACGTCTTTCTCTCG-AAACCAACCCTTATGGTGGGCACCG  1089

seq1  AGTCATTTTTTTTAAAAATAGATATATA-ATATCATTTTTAAACTTCTG-  1144
       |  |  |||||| | ||  |||||  |  ||  ||||| || | || | 
seq2  GGCTAGATTTTTTGAGAA-GGATATTGACTTACGATTTTAAACCGTCGGA  1138

seq1  AGGTTA-TAATTAC-AGCATTTTCC-CTTCTCTTTTCCC  1180
      ||||||  |||||| || |||| || |||||||||||||
seq2  AGGTTAGAAATTACGAGGATTTCCCTCTTCTCTTTTCCC  1177