BAC Information

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BAC

Clone NameB6Ng01-129K20
Chromosome2 (Build37)
Map Location 163,684,963 - 163,686,040
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15
Downstream geneRims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129K20.bB6Ng01-129K20.g
ACCDH931197DH931198
length1,073994
definitionDH931197|Mus musculus domesticus DNA, BAC clone: B6Ng01-129K20, 5' end.DH931198|Mus musculus domesticus DNA, BAC clone: B6Ng01-129K20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaccaggaagtctggatgttcatgctagaagcacggagatggac
agggtgaagggaatttatggaaaattttgcactatatagatgactgcatt
ttctttgctctgcatgaaaatgtggaatgtgtaaatgtataaacggttgt
ccccgctgtcaaacagatgccgtgtccctggctagccccttttgggtgaa
gggatggcctcctcactatcactacctataggcagctcagtgctgtggga
tgagtttcgtactggaccccaccctatcattggtgatatatcactaggac
tctcatccctttcctgggccttagcttccccttcagtagaacagggtgct
tctgaagagcctgctttacacgggcaccagtggcacagcttcctgatgca
ggcacagaggatgttcatgagcctggtggaggcatcttagcatcctagag
agctcaccacttaaaagaccagtatcctttatcttctcaggtagaactgt
ccctgagtaaagcaagagcaaaaccagggtagaaaagccaaaaactttaa
tttccaacatgagctatgtggtcatgaatacaatgccatgtgacccactc
caactcagacgcaccccaaaccctccctccctggaggaccaggccgttcc
tgctccccaagaggacacagggaaaggtgggtagatgaagggaggctccc
agcccaaggactctggggtcccatcttcctgtcaccttgcaggatggcac
aaaggactcagaggtaacacctatgtctacttctagcctcccacccagcc
cacacaggctctcttgctgaaaggaaaaaaacccttgggcttgctaggca
agcctatagaaactctctgtccactaaggttctgttttgtagacacaggc
cctcttggagggccaagagagccattgcaggggacaggaaaggggtctaa
ggctctgggctggtgtagcactcgctgttgctcaataaataaatgcagtg
actgctggtgcacagctcttgccttggggagagggtggggagccctgtgg
ctgtttctgaactcaagtgctca
gaattcactcctagtcactcccattctcggggtgtaatagtggggtgatg
ggcaagcaacgaaccaggagctgtcacgccatatcaggtgctgaaacgtc
acgctgcgggttataaaagcagcgccattttcccggttcgggatcttcct
gagaagcaagcaataaagcttttgccacggaagattctggtttgttgcgt
ctttcttgccagttgagtgggacgcaatagtccttgcccctacttggctt
caattggtaaaattgccagtggccaatgattgggcaaggagacagaggca
ggactttaggttttgcaggcgaggggaccaaaggaggaaaaaggacagaa
ctgccatgctgagggaagtgcaggatagagagacagccagtatgtaagag
ccagggaagaacagttccagttccctcccctccctcacctcccctcccct
cccccacaaattgtgtctagggcaacaaagatgaatatagatgttagtaa
gtaactcaggagtatcggaggggaggtgttagccatgtggaagttaaggc
gtggcccagtcattgagctgattaagacatgttaaatataaagctctgtg
tgtgtgttttcatttcaagattccagaacattggggctggtagtgaggaa
ctcatgctgccaccatggggccaatcttgagtaccattaattgcctacag
gaatacagcagaaaagagccctcttcccttctacataacatgaagactgt
gacttgtcaccacttgggcaccgtgttagagttagttgtctgagtaaggg
atcgtactcataatgttcacaatttgaagttggaggcaggcagctcggac
tgattggatggcttcttcagaaaccgcccttaatccagctgcttcattcg
tataaactgtcctttctggctcagccacagttgagatggcttcttcggat
tcagcaattgtcctgtaccaatagactcgagaagtacagagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_163684963_163686040
seq2: B6Ng01-129K20.b_49_1121

seq1  GAATTCTACCAGGAAGTCTGGATGTTCATGCTAGAAGCACGGAGATGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCAGGAAGTCTGGATGTTCATGCTAGAAGCACGGAGATGGAC  50

seq1  AGGGTGAAGGGAATTTATGGAAAATTTTGCACTATATAGATGACTGCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAAGGGAATTTATGGAAAATTTTGCACTATATAGATGACTGCATT  100

seq1  TTCTTTGCTCTGCATGAAAATGTGGAATGTGTAAATGTATAAACGGTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGCTCTGCATGAAAATGTGGAATGTGTAAATGTATAAACGGTTGT  150

seq1  CCCCGCTGTCAAACAGATGCCGTGTCCCTGGCTAGCCCCTTTTGGGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCTGTCAAACAGATGCCGTGTCCCTGGCTAGCCCCTTTTGGGTGAA  200

seq1  GGGATGGCCTCCTCACTATCACTACCTATAGGCAGCTCAGTGCTGTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGCCTCCTCACTATCACTACCTATAGGCAGCTCAGTGCTGTGGGA  250

seq1  TGAGTTTCGTACTGGACCCCACCCTATCATTGGTGATATATCACTAGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCGTACTGGACCCCACCCTATCATTGGTGATATATCACTAGGAC  300

seq1  TCTCATCCCTTTCCTGGGCCTTAGCTTCCCCTTCAGTAGAACAGGGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCCCTTTCCTGGGCCTTAGCTTCCCCTTCAGTAGAACAGGGTGCT  350

seq1  TCTGAAGAGCCTGCTTTACACGGGCACCAGTGGCACAGCTTCCTGATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGAGCCTGCTTTACACGGGCACCAGTGGCACAGCTTCCTGATGCA  400

seq1  GGCACAGAGGATGTTCATGAGCCTGGTGGAGGCATCTTAGCATCCTAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGAGGATGTTCATGAGCCTGGTGGAGGCATCTTAGCATCCTAGAG  450

seq1  AGCTCACCACTTAAAAGACCAGTATCCTTTATCTTCTCAGGTAGAACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACCACTTAAAAGACCAGTATCCTTTATCTTCTCAGGTAGAACTGT  500

seq1  CCCTGAGTAAAGCAAGAGCAAAACCAGGGTAGAAAAGCCAAAAACTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGTAAAGCAAGAGCAAAACCAGGGTAGAAAAGCCAAAAACTTTAA  550

seq1  TTTCCAACATGAGCTATGTGGTCATGAATACAATGCCATGTGACCCACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACATGAGCTATGTGGTCATGAATACAATGCCATGTGACCCACTC  600

seq1  CAACTCAGACGCACCCCAAACCCTCCCTCCCTGGAGGACCAGGCCGTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAGACGCACCCCAAACCCTCCCTCCCTGGAGGACCAGGCCGTTCC  650

seq1  TGCTCCCCAAGAGGACACAGGGAAAGGTGGGTAGATGAAGGGAGGCTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCAAGAGGACACAGGGAAAGGTGGGTAGATGAAGGGAGGCTCCC  700

seq1  AGCCCAAGGACTCTGGGGTCCCATCTTCCTGTCACCTTGCAGGATGGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAGGACTCTGGGGTCCCATCTTCCTGTCACCTTGCAGGATGGCAC  750

seq1  AAAGGACTCAGAGGTAACACCTATGTCTACTTCTAGCCTCCCACCCAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACTCAGAGGTAACACCTATGTCTACTTCTAGCCTCCCACCCAGCC  800

seq1  CACACAGGCTCTCTTGCTGAAAGGAAAAAAACCCTTGGGCTTGCTAGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGCTCTCTTGCTGAAAGGAAAAAAACCCTTGGGCTTGCTAGGCA  850

seq1  AGCCTATAGAAACTCTCTGTCCACTAAGGTCCTGTTTTGCAGACACAGGC  900
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  AGCCTATAGAAACTCTCTGTCCACTAAGGTTCTGTTTTGTAGACACAGGC  900

seq1  CCTCTTGGAGGGCCAAGAGAGCCATTGCAGGGGACAGGAAAGGGGTCTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGGAGGGCCAAGAGAGCCATTGCAGGGGACAGGAAAGGGGTCTAA  950

seq1  GGCTCTGGGCCTGGTGTAGCACTCGCTGTTGCTCAATAAATAAATGCAGG  1000
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  GGCTCTGGG-CTGGTGTAGCACTCGCTGTTGCTCAATAAATAAATGCA-G  998

seq1  TGACCTTGCCTGGTGCAACAGCTC-TGCCTT-GGGAGAGTGTGGGAGCCC  1048
      ||||  || ||||||| ||||||| |||||| ||||||| |||||   ||
seq2  TGAC--TG-CTGGTGC-ACAGCTCTTGCCTTGGGGAGAGGGTGGGGAGCC  1044

seq1  CTGT-GCTGTTTCTGAACCCCAAAGTGCTCA  1078
      |||| ||||||||||||| |  |||||||||
seq2  CTGTGGCTGTTTCTGAACTC--AAGTGCTCA  1073