BAC Information

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BAC

Clone NameB6Ng01-129L09
Chromosome2 (Build37)
Map Location 143,595,136 - 143,637,063
singlet/doubletdoublet
Overlap genePcsk2
Upstream geneKif16b, Snrpb2, Otor, LOC668915, LOC668916
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129L09.bB6Ng01-129L09.g
ACCDH931223DH931224
length1,142527
definitionDH931223|Mus musculus domesticus DNA, BAC clone: B6Ng01-129L09, 5' end.DH931224|Mus musculus domesticus DNA, BAC clone: B6Ng01-129L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,635,907 - 143,637,063)(143,595,136 - 143,595,668)
sequence
gaattcctaacagtacacacttacttgtttttatgaaatgatagctatct
taaaacatatatcttgtagaacgcatttacaaaaagattctcatcacaca
caactagcttggtgccatgcctgattctgtattatccttggaaccaagat
tacaagtctgagagggtttccggaagcacacaccatgtttaaggcatact
ctcctgagcaacttgaaaactatgatgtttaacaccatcgttgtcagctt
gacaggatctagcatctcccagggaacaagcctctaggcccatcggtgag
ggaccatttagactcaggttagcctctgatcatgactgtgagggagtata
ttggttgggttaattgctataggtggggccattttctgaatggggactct
gaactgtatcattataaactcaacactggcatttgccattctctgctctc
cgaccatagatgggatttgaccagttgcctcaagttgctgctattgtaac
atccccgccaagatggactataactttgaactatgagccaaataagttgc
tttgggcagggaattttatcacagtagctgtaaaagtaatgcagaaaata
ggtatctctatggagtgaagtggcatcaatgcttgatggcccacaaagca
gccactggctatagagagctggggacagtggggaagtggcattttagtcc
taggctcttcagaatttgttggtgagcagtcatgaagccagctttggaag
tcaggttttatacatgtatgtatacagagcatattagtaaatggctggat
tggcattggcctacagaacctcctactgtggtggaagtgtcctgtacctg
ggcacacttgtacagtaggcacttggcacttatggcaacggaacacttaa
gatgcagtgagcacgagtgaggagctgaaggtttactttagaatttcaat
ttaattactttttattcattgatatgatagtaatcccacatagaaagcac
aagtggaaactgtttttgtctgatatttggatctataagaacaatgatat
gtgggaaggtcctgtcttctgtgttatgatgccagttcttcctggtagac
tacatggcagatttctggccacctttgaaggtttagatggct
aagggaccaaaacatctgtacaaaccagctcacaggcatatatcccagag
tctttaacaagccctgtgaggcggaaatggtcttttcccttaaggaggag
tcctggcattggtctcacagctgtcctgtcattgacatgagtgacacctg
gtcatcttttcatgcatggtgcaatgatttctactctttcaaggactcag
ccttgacacctaccaaacttaatcagactccaaaaaagttccgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgttgtggaaactgagaaagctgaagtcaga
ggaataaggagattagtcactggaagttagggaggatgaggaagaggagg
cacagaagccggttggatgaatagtactaaaatatactatataggaaaag
tcctagtggtccacagcatagaagggaatctacagtccacaataatttgt
tatatattttataaagaactgaaagagaagacttcgtagtttcccaagac
aaagaaatgagcatccaaggagataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143635907_143637063
seq2: B6Ng01-129L09.b_50_1191 (reverse)

seq1  AGCCATTCTAAAAACCTCCAAAGGGTGGCCAGAAATCCTGCATTGTTAGT  50
      ||||| |||  |||||| |||| ||||||||||||| ||||  || ||||
seq2  AGCCA-TCT--AAACCTTCAAA-GGTGGCCAGAAAT-CTGCCATG-TAGT  44

seq1  CTACCAGGAAGAAACTGGCACTCATAAACACAGAAGACCAGGACCTCTCC  100
      ||||||||||| |||||||| |||| ||||||||||| |||||||| |||
seq2  CTACCAGGAAG-AACTGGCA-TCAT-AACACAGAAGA-CAGGACCT-TCC  89

seq1  CACATATCATTGTTCTTATTAGATTCAAATTATCAGACAAAAACAGTTTC  150
      |||||||||||||||||| ||||| |||| ||||||||||||||||||||
seq2  CACATATCATTGTTCTTA-TAGATCCAAA-TATCAGACAAAAACAGTTTC  137

seq1  CACTTGTGCTTTCTATGTGGGATTAACTATCATATCAATGAATAAAAAGT  200
      |||||||||||||||||||||||| |||||||||||||||||||||||| 
seq2  CACTTGTGCTTTCTATGTGGGATT-ACTATCATATCAATGAATAAAAAG-  185

seq1  TAATTAAATTGAAATTCTAAAGTAAACCTTCAGCTCCTCACTCGTGCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAATTGAAATTCTAAAGTAAACCTTCAGCTCCTCACTCGTGCTCA  235

seq1  CTGCATCTTAAGTGTTCCGTTGCCATAGGTGGCCAGTGCCTACTGTACAA  300
      ||||||||||||||||||||||||||| ||| | ||||||||||||||||
seq2  CTGCATCTTAAGTGTTCCGTTGCCATAAGTGCCAAGTGCCTACTGTACAA  285

seq1  GTGTGCCCAGGTACAGGACACTTCCACCACAGTAGGAGGTTCTGTAGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCCAGGTACAGGACACTTCCACCACAGTAGGAGGTTCTGTAGGCC  335

seq1  AATGCCAATCCAGCCATTTACTAATATGCTCTGTATACATACATGTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAATCCAGCCATTTACTAATATGCTCTGTATACATACATGTATAA  385

seq1  AACCTGACTTCCAAAGCTGGCTTCATGACTGCTCACCAACAAATTCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGACTTCCAAAGCTGGCTTCATGACTGCTCACCAACAAATTCTGAA  435

seq1  GAGCCTAGGACTAAAATGCCACTTCCCCACTGTCCCCAGCTCTCTATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTAGGACTAAAATGCCACTTCCCCACTGTCCCCAGCTCTCTATAGC  485

seq1  CAGTGGCTGCTTTGTGGGCCATCAAGCATTGATGCCACTTCACTCCATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCTGCTTTGTGGGCCATCAAGCATTGATGCCACTTCACTCCATAG  535

seq1  AGATACCTATTTTCTGCATTACTTTTACAGCTACTGTGATAAAATTCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCTATTTTCTGCATTACTTTTACAGCTACTGTGATAAAATTCCCT  585

seq1  GCCCAAAGCAACTTATTTGGCTCATAGTTCAAAGTTATAGTCCATCTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAAGCAACTTATTTGGCTCATAGTTCAAAGTTATAGTCCATCTTGG  635

seq1  CGGGGATGTTACAATAGCAGCAACTTGAGGCAACTGGTCAAATCCCATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGATGTTACAATAGCAGCAACTTGAGGCAACTGGTCAAATCCCATCT  685

seq1  ATGGTCGGAGAGCAGAGAATGGCAAATGCCAGTGTTGAGTTTATAATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCGGAGAGCAGAGAATGGCAAATGCCAGTGTTGAGTTTATAATGAT  735

seq1  ACAGTTCAGAGTCCCCATTCAGAAAATGGCCCCACCTATAGCAATTAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCAGAGTCCCCATTCAGAAAATGGCCCCACCTATAGCAATTAACC  785

seq1  CAACCAATATACTCCCTCACAGTCATGATCAGAGGCTAACCTGAGTCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAATATACTCCCTCACAGTCATGATCAGAGGCTAACCTGAGTCTAA  835

seq1  ATGGTCCCTCACCGATGGGCCTAGAGGCTTGTTCCCTGGGAGATGCTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCCTCACCGATGGGCCTAGAGGCTTGTTCCCTGGGAGATGCTAGA  885

seq1  TCCTGTCAAGCTGACAACGATGGTGTTAAACATCATAGTTTTCAAGTTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCAAGCTGACAACGATGGTGTTAAACATCATAGTTTTCAAGTTGC  935

seq1  TCAGGAGAGTATGCCTTAAACATGGTGTGTGCTTCCGGAAACCCTCTCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGAGTATGCCTTAAACATGGTGTGTGCTTCCGGAAACCCTCTCAG  985

seq1  ACTTGTAATCTTGGTTCCAAGGATAATACAGAATCAGGCATGGCACCAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTAATCTTGGTTCCAAGGATAATACAGAATCAGGCATGGCACCAAG  1035

seq1  CTAGTTGTGTGTGATGAGAATCTTTTTGTAAATGCGTTCTACAAGATATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGTGTGTGATGAGAATCTTTTTGTAAATGCGTTCTACAAGATATA  1085

seq1  TGTTTTAAGATAGCTATCATTTCATAAAAACAAGTAAGTGTGTACTGTTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAGATAGCTATCATTTCATAAAAACAAGTAAGTGTGTACTGTTA  1135

seq1  GGAATTC  1157
      |||||||
seq2  GGAATTC  1142

seq1: chr2_143595136_143595668
seq2: B6Ng01-129L09.g_67_599

seq1  GAATTCAAGGGACCAAAACATCTGTACAAACCAGCTCACAGGCATATATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGGACCAAAACATCTGTACAAACCAGCTCACAGGCATATATC  50

seq1  CCAGAGTCTTTAACAAGCCCTGTGAGGCGGAAATGGTCTTTTCCCTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTCTTTAACAAGCCCTGTGAGGCGGAAATGGTCTTTTCCCTTAAG  100

seq1  GAGGAGTCCTGGCATTGGTCTCACAGCTGTCCTGTCATTGACATGAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTCCTGGCATTGGTCTCACAGCTGTCCTGTCATTGACATGAGTGA  150

seq1  CACCTGGTCATCTTTTCATGCATGGTGCAATGATTTCTACTCTTTCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGTCATCTTTTCATGCATGGTGCAATGATTTCTACTCTTTCAAGG  200

seq1  ACTCAGCCTTGACACCTACCAAACTTAATCAGACTCCAAAAAAGTTCCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCCTTGACACCTACCAAACTTAATCAGACTCCAAAAAAGTTCCGT  250

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTGGAAACTGAGAAAGCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTGGAAACTGAGAAAGCTGAA  300

seq1  GTCAGAGGAATAAGGAGATTAGTCACTGGAAGTTAGGGAGGATGAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGGAATAAGGAGATTAGTCACTGGAAGTTAGGGAGGATGAGGAAG  350

seq1  AGGAGGCACAGAAGCCGGTTGGATGAATAGTACTAAAATATACTATATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCACAGAAGCCGGTTGGATGAATAGTACTAAAATATACTATATAG  400

seq1  GAAAAGTCCTAGTGGTCCACAGCATAGAAGGGAAACTACAGTCCACAATA  450
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAAAAGTCCTAGTGGTCCACAGCATAGAAGGGAATCTACAGTCCACAATA  450

seq1  ATTTGTTATATATTTTATAAAGAACTGAAAGAGAAGACTTCGAAGTTTCC  500
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTTGTTATATATTTTATAAAGAACTGAAAGAGAAGACTTCGTAGTTTCC  500

seq1  CAAGACAAAGAAATGAGCATCCAAGGAGATAGA  533
      |||||||||||||||||||||||||||||||||
seq2  CAAGACAAAGAAATGAGCATCCAAGGAGATAGA  533