BAC Information

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BAC

Clone NameB6Ng01-130H24
Chromosome2 (Build37)
Map Location 111,108,858 - 111,218,018
singlet/doubletdoublet
Overlap geneOlfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283
Upstream geneBbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276
Downstream geneOlfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130H24.bB6Ng01-130H24.g
ACCDH931797DH931798
length1,1561,055
definitionDH931797|Mus musculus domesticus DNA, BAC clone: B6Ng01-130H24, 5' end.DH931798|Mus musculus domesticus DNA, BAC clone: B6Ng01-130H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,108,858 - 111,110,019)(111,216,960 - 111,218,018)
sequence
gaattcataaatattatgacattattattctaatgacattttctgtgttg
agctctttttaagcctttatagtaagtatccttttaaagctttgtgtaga
taattaggacgctgaagagtgggtctctgggaggcctttcccttaggcct
ggccactttagcataggattgtctcctgtatatttttttttactagcaaa
caaatagaatggcctagtggagattctaccattttaacacttaagatgca
aggagacttcagcaccaaaagagaccatttcaaaaattacaaaggacatt
ctccagtcacaaccatgtgaaagagccatactctacactccaaaaacact
ctaagcaagacaactttaggcttagtggaaattttagagaattgtcacat
gctttgataattgattctatagagaaataatgagaactgaagtagcaagt
agcagctccaactataataggtacaagtaatttgtcgttaacctgtcaat
aacttgggatagtcaaaatcctaattttaaatattagtattattatatag
acagaaatttattttttatacaatgatgaatgaaatctgtaaaattgaag
agacagatatcttttaactagtggcacatataagattcatcaattggaga
aaatttgtagtctagagtaaaagaaaaagtttgattagtttaggaactta
caagttaacattctaataatataaaatcctaaaatatccatgaaactcgt
ttgctagcattgtaatctcttcatagcagttttaatctctttgtttctta
aagtataaatggctggattcagaagaggtgtgataactgcataaaacaca
gcaagaaacttgtccacccaggttatgctgactggccacaggtagatgaa
gatgcaggcccaaaaaataataccaccactgtgatgtgggcagtacagta
gagagagcttggatgccccatccttagagtgaaggcagacagtagtcaga
tatggaaataggacaccagcacagaacaaagcatatggctgctagcacac
ccacctgtcagcattatcaaaatttctagaacatagatgtccaaggcagc
ctagctgattacatgggaatatcgctcagaaaactgtcaactctctggat
ccacag
gaattctttttctatcactgcttaaaaaaatctagatgctaggtttggca
gcacttgggtgtaggtaacaaaacatgatcagcaattcaatgtaattcag
atacggatggtgagcttgagactagaattggcttcagaggacctcttgtc
aaaatgcaaagcaagtgaacaaacacataaataagtaagactctggaatt
ctgtgcactaatatttctttctctccaactcccccgttgtaaggccttga
ccaactttattcattctactgtgatacttccgtctcttcagattatttta
gagaaaataattataaatctcaatatcctgtgcgatagtcacattaattt
tagttttcatggtgttactgaaaaatttcatgttctcaatcattgtttta
tttctacatatttctaccagtggttttctgaggtctatcagctatgtgcc
tttccagtttttatcaacataaattttatttcctcagaatgtgaactgaa
gggtgttaattttaagtgaaacaatctttatattatattaggaccagatt
ttctctaaattgtagctatgcatttttatatatttgctttctaataattc
ctaaatcagttccttcctctagataactattataatttttttgcttctac
ttcttatttatatatcttgactacaatgaatgatactattgtctcctttc
ttgcttgtgtttatatcaatctacgggatgtgattttctaaattaattct
tgggtgtatttcttaagtactttttgaagttcttcaagacactgtacaca
attttgatgaaacagcagaatatatcagaggattttaacccacttataca
gaaaatgaatataacatatgaattactaattttaaactgacttgtaaact
tacaaaaataaaagaaagcatttataaataatttattcagataatttgca
tggattttagtgtcaacttctgatttcagtaaaaatttaagctaccagaa
taagaaaagcttgtagagcttataatataagcagtgtggtttatgatgtt
gacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_111108858_111110019
seq2: B6Ng01-130H24.b_46_1201

seq1  GAATTCATAAATATTATGACATTATTATTCTAATGACATTTTCTGTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAATATTATGACATTATTATTCTAATGACATTTTCTGTGTTG  50

seq1  AGCTCTTTTTAAGCCTTTATAGTAAGTATCCTTTTAAAGCTTTGTGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTTTAAGCCTTTATAGTAAGTATCCTTTTAAAGCTTTGTGTAGA  100

seq1  TAATTAGGACGCTGAAGAGTGGGTCTCTGGGAGGCCTTTCCCTTAGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGGACGCTGAAGAGTGGGTCTCTGGGAGGCCTTTCCCTTAGGCCT  150

seq1  GGCCACTTTAGCATAGGATTGTCTCCTGTATATTTTTTTTTACTAGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTTTAGCATAGGATTGTCTCCTGTATATTTTTTTTTACTAGCAAA  200

seq1  CAAATAGAATGGCCTAGTGGAGATTCTACCATTTTAACACTTAAGATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGAATGGCCTAGTGGAGATTCTACCATTTTAACACTTAAGATGCA  250

seq1  AGGAGACTTCAGCACCAAAAGAGACCATTTCAAAAATTACAAAGGACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTTCAGCACCAAAAGAGACCATTTCAAAAATTACAAAGGACATT  300

seq1  CTCCAGTCACAACCATGTGAAAGAGCCATACTCTACACTCCAAAAACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTCACAACCATGTGAAAGAGCCATACTCTACACTCCAAAAACACT  350

seq1  CTAAGCAAGACAACTTTAGGCTTAGTGGAAATTTTAGAGAATTGTCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCAAGACAACTTTAGGCTTAGTGGAAATTTTAGAGAATTGTCACAT  400

seq1  GCTTTGATAATTGATTCTATAGAGAAATAATGAGAACTGAAGTAGCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGATAATTGATTCTATAGAGAAATAATGAGAACTGAAGTAGCAAGT  450

seq1  AGCAGCTCCAACTATAATAGGTACAAGTAATTTGTCGTTAACCTGTCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTCCAACTATAATAGGTACAAGTAATTTGTCGTTAACCTGTCAAT  500

seq1  AACTTGGGATAGTCAAAATCCTAATTTTAAATATTAGTATTATTATATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGGATAGTCAAAATCCTAATTTTAAATATTAGTATTATTATATAG  550

seq1  ACAGAAATTTATTTTTTATACAATGATGAATGAAATCTGTAAAATTGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATTTATTTTTTATACAATGATGAATGAAATCTGTAAAATTGAAG  600

seq1  AGACAGATATCTTTTAACTAGTGGCACATATAAGATTCATCAATTGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATATCTTTTAACTAGTGGCACATATAAGATTCATCAATTGGAGA  650

seq1  AAATTTGTAGTCTAGAGTAAAAGAAAAAGTTTGATTAGTTTAGGAACTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTAGTCTAGAGTAAAAGAAAAAGTTTGATTAGTTTAGGAACTTA  700

seq1  CAAGTTAACATTCTAATAATATAAAATCCTAAAATATCCATGAAACTCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTAACATTCTAATAATATAAAATCCTAAAATATCCATGAAACTCGT  750

seq1  TTGCTAGCATTGTAATCTCTTCATAGCAGTTTTAATCTCTTTGTTTCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGCATTGTAATCTCTTCATAGCAGTTTTAATCTCTTTGTTTCTTA  800

seq1  AAGTATAAATGGCTGGATTCAGAAGAGGTGTGATAACTGCATAAAACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAAATGGCTGGATTCAGAAGAGGTGTGATAACTGCATAAAACACA  850

seq1  GCAAGAAACTTGTCCACCCAGGTTATGCTGACTGGCCACAGGTAGATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAACTTGTCCACCCAGGTTATGCTGACTGGCCACAGGTAGATGAA  900

seq1  GATGCAGGGCCCAAAAAATAATACCACCACTGTGATGTGGGCAGTACAAG  950
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  GATGCA-GGCCCAAAAAATAATACCACCACTGTGATGTGGGCAGTAC-AG  948

seq1  TAGAGAGAGCTTTGGATGCCCCATCCTTAGAGTGAAGGCAGACAGTAGTC  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGAGC-TTGGATGCCCCATCCTTAGAGTGAAGGCAGACAGTAGTC  997

seq1  AGGATATGGAAATAGGACACCAGCAACAGAACAAAGCATATGGCTGCTAG  1050
      | |||||||||||||||||||||| |||||||||||||||||||||||||
seq2  A-GATATGGAAATAGGACACCAGC-ACAGAACAAAGCATATGGCTGCTAG  1045

seq1  CACACC--ACTGTCAGCATTTATCAAAATTTCTAGAACATAGATGTCCAA  1098
      ||||||   ||||||||| |||||||||||||||||||||||||||||||
seq2  CACACCCACCTGTCAGCA-TTATCAAAATTTCTAGAACATAGATGTCCAA  1094

seq1  -GCAGGCTAGCTTGATTACCAATGGAATATCGCAGAAAAAACTGTCCAAA  1147
       |||| ||||| |||||| ||  ||||||||||  | |||||||| ||| 
seq2  GGCAGCCTAGC-TGATTA-CATGGGAATATCGCTCAGAAAACTGT-CAAC  1141

seq1  ACTCTGGATCCACAG  1162
       ||||||||||||||
seq2  TCTCTGGATCCACAG  1156

seq1: chr2_111216960_111218018
seq2: B6Ng01-130H24.g_68_1121 (reverse)

seq1  TGTCTACATCATAA--CACACTGCTAATA-TAT-AGCTCTAACAGGCTTT  46
      |||| |||||||||  ||||||||| ||| ||| |||||| ||| |||||
seq2  TGTCAACATCATAAACCACACTGCTTATATTATAAGCTCT-ACAAGCTTT  49

seq1  TCTTTATTCTGTTAGCTTTATATTTTACTGAAAATCAGAAGTTGACAACT  96
      || |||||||| |||||| |  |||||||| ||||||||||||||| |||
seq2  TC-TTATTCTGGTAGCTTAAATTTTTACTG-AAATCAGAAGTTGAC-ACT  96

seq1  TAAAAATTCCATGCAAATTATCTTGAATAAATTATTTATAAATGCTTTCT  146
         ||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  ---AAAATCCATGCAAATTATC-TGAATAAATTATTTATAAATGCTTTCT  142

seq1  TTTATTTTTGTAAGTTTACAAGTCAGTTTAAAATTAGTAATTCATATGTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTGTAAGTTTACAAGTCAGTTTAAAATTAGTAATTCATATGTT  192

seq1  ATATTCATTTTCTGTAATAAGTGGGTTAAAATCCTCTGATATATTCTGCT  246
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATATTCATTTTCTGT-ATAAGTGGGTTAAAATCCTCTGATATATTCTGCT  241

seq1  GTTTCATCAAAATTGTGTACAGTGTCTTGAAGAACTTCAAAAAGTACTTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATCAAAATTGTGTACAGTGTCTTGAAGAACTTCAAAAAGTACTTA  291

seq1  AGAAATACACCCAAGAATTAATTTAGAAAATCACATCCCGTAGATTGATA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATACACCCAAGAATTAATTTAGAAAATCACATCCCGTAGATTGATA  341

seq1  TAAACACAAGCAAGAAAGGAGACAATAGTATCATTCATTGTAGTCAAGAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACAAGCAAGAAAGGAGACAATAGTATCATTCATTGTAGTCAAGAT  391

seq1  ATATAAATAAGAAGTAGAAGCAAAAAAATTATAATAGTTATCTAGAGGAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATAAGAAGTAGAAGCAAAAAAATTATAATAGTTATCTAGAGGAA  441

seq1  GGAACTGATTTAGGAATTATTAGAAAGCAAATATATAAAAATGCATAGCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGATTTAGGAATTATTAGAAAGCAAATATATAAAAATGCATAGCT  491

seq1  ACAATTTAGAGAAAATCTGGTCCTAATATAATATAAAGATTGTTTCACTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTAGAGAAAATCTGGTCCTAATATAATATAAAGATTGTTTCACTT  541

seq1  AAAATTAACACCCTTCAGTTCACATTCTGAGGAAATAAAATTTATGTTGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAACACCCTTCAGTTCACATTCTGAGGAAATAAAATTTATGTTGA  591

seq1  TAAAAACTGGAAAGGCACATAGCTGATAGACCTCAGAAAACCACTGGTAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACTGGAAAGGCACATAGCTGATAGACCTCAGAAAACCACTGGTAG  641

seq1  AAATATGTAGAAATAAAACAATGATTGAGAACATGAAATTTTTCAGTAAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTAGAAATAAAACAATGATTGAGAACATGAAATTTTTCAGTAAC  691

seq1  ACCATGAAAACTAAAATTAATGTGACTATCGCACAGGATATTGAGATTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAAAACTAAAATTAATGTGACTATCGCACAGGATATTGAGATTTA  741

seq1  TAATTATTTTCTCTAAAATAATCTGAAGAGACGGAAGTATCACAGTAGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTTTCTCTAAAATAATCTGAAGAGACGGAAGTATCACAGTAGAA  791

seq1  TGAATAAAGTTGGTCAAGGCCTTACAACGGGGGAGTTGGAGAGAAAGAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAGTTGGTCAAGGCCTTACAACGGGGGAGTTGGAGAGAAAGAAA  841

seq1  TATTAGTGCACAGAATTCCAGAGTCTTACTTATTTATGTGTTTGTTCACT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTGCACAGAATTCCAGAGTCTTACTTATTTATGTGTTTGTTCACT  891

seq1  TGCTTTGCATTTTGACAAGAGGTCCTCTGAAGCCAATTCTAGTCTCAAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGCATTTTGACAAGAGGTCCTCTGAAGCCAATTCTAGTCTCAAGC  941

seq1  TCACCATCCGTATCTGAATTACATTGAATTGCTGATCATGTTTTGTTACC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATCCGTATCTGAATTACATTGAATTGCTGATCATGTTTTGTTACC  991

seq1  TACACCCAAGTGCTGCCAAACCTAGCATCTAGATTTTTTTAAGCAGTGAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCAAGTGCTGCCAAACCTAGCATCTAGATTTTTTTAAGCAGTGAT  1041

seq1  AGAAAAAGAATTC  1059
      |||||||||||||
seq2  AGAAAAAGAATTC  1054