BAC Information

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BAC

Clone NameB6Ng01-130M06
Chromosome2 (Build37)
Map Location 41,398,040 - 41,399,039
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC666531, LOC100042629
Downstream geneLOC625094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130M06.bB6Ng01-130M06.g
ACCDH931996DH931997
length879978
definitionDH931996|Mus musculus domesticus DNA, BAC clone: B6Ng01-130M06, 5' end.DH931997|Mus musculus domesticus DNA, BAC clone: B6Ng01-130M06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatagaatgaatgaggttgtgttccttctgtttctgttttgagga
atgatttgagaaatattggttggtattaggtcttccgcggatcccagtgg
aagagttacaggaaggattgaaggaactgaagggcattgcaaccccatat
caagaacaacaatatcaactaactggactccgctgagttcccagggacta
aaccacaaatctaagtgtatacatgagttggttcatgctacatatgtagc
agaggattgcctaatctcccatcaataggagaggggatgtgtggtcctgt
agagcatgttaacccagcaaagggggatgctagagagctgaggctggagt
aggtggatgggtgggtgagggagcaccttcttagaggcaaaggggaggtg
tgtttgtacaggggagactggagcggggagaaatgagagtaatgcaacta
aatcaaatggccaatataattgattggctcccatgaggttagtaggcagg
tcttattgcggaaccctacagcgactcactttctccaacaaaatcttatt
ctactctaacaacctctttatagcgcgactccgtgcgcctagagtataca
tggcacaatatagcgaatatattaagtttctcaaaatccaacaattgaga
ctgagtaactaatacacaggcctcattttgcttttttgcttgtgtgagtg
tggccccataccccacagaaatttgtgaaaaaatattacaccctacattt
tgctccgtcacctttcctgtgtattttccctttccctcaactctgagttc
agatggtagtgagccacgtatgtgtgaaacttcactctctgatggtgata
tgatgccagacttttgtaatttgctctta

gaattcataagagatttttttctacttcttttctatttaatgttccaaat
ttttcagattttaaaatctgaaaaaaataaataaaaataaaacaaagagg
gctgggagaaagagttaaaaaaatgattagcttaggaatacaaaatctca
ttgtgcactccagagttgcctcgagtttctaatcatgctttaaacttcca
attgtggaagtcagtcaaacatcataaaactctgaatacagaaatatttt
taaaatactgcttcatacgaatgataaacctagatatgtataacttactg
accatttgctatatattgagtgtttatttatcattatcaaaggctttcat
atttacctatttggcatttacaggattaatggcaaggacttccccacata
agcagcctacagttcattgaatttgttaacttactgacaatcctaatatt
cttcacaaaatggatttctctaatttaataaattaaaaagtttcacagtg
tcaatagcttgttacatgaagcaatcaatcatgaggaaacaagcattcat
tttatcatccatagtttttaagatgaaaagcacagtttacaatccatact
ctcatgaaataattttttaaattttccatcatgtttaatatgcatttagt
ttgtatgtgtttacatattcatgcaacacagaattcacaggacaaattta
tagttttatttggagttgggtctttctttctgtcatgtagatctagggaa
tctaacttgtcagacgtctctttatctatactaaacacctcaaggacact
gaaagaaaactctcatgtcagttgcaggctttaatgatttggagttgtct
gtaggaagtggccagtatgaatgaaactgctacctgacaattctcatttc
tggcttgacttatgagaggtcaagtcgttcaccctgtctgtctttctgtc
catcttgtccttctttaaatcttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_41398040_41399039
seq2: B6Ng01-130M06.g_66_1043 (reverse)

seq1  AAAAAAAGATTTAAAAGAAGGAAACCAAAAGAAGTGGAACAAGAAAAGAC  50
      |||||||||||| ||||||||     | ||||  ||| |||   ||||||
seq2  AAAAAAAGATTT-AAAGAAGG-----ACAAGA--TGG-ACA--GAAAGAC  39

seq1  AGACAGGGTGAACAGACTTGAACTCTCATTAAGTACAGACAGGAAAATTG  100
      ||||||||||||| ||||||| |||||| |||||  || |||   || ||
seq2  AGACAGGGTGAAC-GACTTGACCTCTCA-TAAGTCAAGCCAG---AAATG  84

seq1  AGAATTGTCAGGTAGCAGTGTTTCATTCATACTGGCCACTTCCTACAGAC  150
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  AGAATTGTCAGGTAGCA--GTTTCATTCATACTGGCCACTTCCTACAGAC  132

seq1  AACTTCAAATCAATACAGCTTGCAACTGACAATGAGAGTTTTCTGTCAGT  200
      |||| ||||||| || ||| |||||||||| ||||||||||||| |||||
seq2  AACTCCAAATCATTAAAGCCTGCAACTGAC-ATGAGAGTTTTCTTTCAGT  181

seq1  GTCCTTGAGGTGTTTTAGTAATAGATAAAGGAGACGTCTGACAAGTTAGA  250
      |||||||||||| |||||| ||||||||| ||||||||||||||||||||
seq2  GTCCTTGAGGTG-TTTAGT-ATAGATAAA-GAGACGTCTGACAAGTTAGA  228

seq1  TTCCCTAGAATCTACATGACAGAAAGAAAGAACCAACTCCAAATAAAACT  300
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  TTCCCTAG-ATCTACATGACAGAAAGAAAGACCCAACTCCAAATAAAACT  277

seq1  ATAAATTTGTCCTGTGAATTCTGTGTTGCATGAATATGTAAACACATAC-  349
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATAAATTTGTCCTGTGAATTCTGTGTTGCATGAATATGTAAACACATACA  327

seq1  AACTAAATGCATATTAAACATGATGGAAAATTTAAAAAATTATTTCATGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATGCATATTAAACATGATGGAAAATTTAAAAAATTATTTCATGA  377

seq1  GAGTATGGATTGTAAACTGTGCTTTTCATCTTAAAAACTATGGATGATAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGGATTGTAAACTGTGCTTTTCATCTTAAAAACTATGGATGATAA  427

seq1  AATGAATGCTTGTTTCCTCATGATTGATTGCTTCATGTAACAAGCTATTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGCTTGTTTCCTCATGATTGATTGCTTCATGTAACAAGCTATTG  477

seq1  ACACTGTGAAACTTTTTAATTTATTAAATTAGAGAAATCCATTTTGTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTGAAACTTTTTAATTTATTAAATTAGAGAAATCCATTTTGTGAA  527

seq1  GAATATTAGGATTGTCAGTAAGTTAACAAATTCAATGAACTGTAGGCTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTAGGATTGTCAGTAAGTTAACAAATTCAATGAACTGTAGGCTGC  577

seq1  TTATGTGGGGAAGTCCTTGCCATTAATCCTGTAAATGCCAAATAGGTAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGGGGAAGTCCTTGCCATTAATCCTGTAAATGCCAAATAGGTAAA  627

seq1  TATGAAAGCCTTTGATAATGATAAATAAACACTCAATATATAGCAAATGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAGCCTTTGATAATGATAAATAAACACTCAATATATAGCAAATGG  677

seq1  TCAGTAAGTTATACATATCTAGGTTTATCATTCGTATGAAGCAGTATTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAGTTATACATATCTAGGTTTATCATTCGTATGAAGCAGTATTTT  727

seq1  AAAAATATTTCTGTATTCAGAGTTTTATGATGTTTGACTGACTTCCACAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTTCTGTATTCAGAGTTTTATGATGTTTGACTGACTTCCACAA  777

seq1  TTGGAAGTTTAAAGCATGATTAGAAACTCGAGGCAACTCTGGAGTGCACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGTTTAAAGCATGATTAGAAACTCGAGGCAACTCTGGAGTGCACA  827

seq1  ATGAGATTTTGTATTCCTAAGCTAATCATTTTTTTAACTCTTTCTCCCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATTTTGTATTCCTAAGCTAATCATTTTTTTAACTCTTTCTCCCAG  877

seq1  CCCTCTTTGTTTTATTTTTATTTATTTTTTTCAGATTTTAAAATCTGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTGTTTTATTTTTATTTATTTTTTTCAGATTTTAAAATCTGAAA  927

seq1  AATTTGGAACATTAAATAGAAAAGAAGTAGAAAAAAATCTCTTATGAATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGAACATTAAATAGAAAAGAAGTAGAAAAAAATCTCTTATGAATT  977

seq1  C  1000
      |
seq2  C  978


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