BAC Information

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BAC

Clone NameB6Ng01-131C18
Chromosome2 (Build37)13 (Build37)
Map Location 162,518,793 - 162,519,91598,425,526 - 98,425,755
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePtprt, LOC100043895, LOC100043896
Downstream geneLOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131C18.bB6Ng01-131C18.g
ACCDH932297DH932298
length1,1191,013
definitionDH932297|Mus musculus domesticus DNA, BAC clone: B6Ng01-131C18, 5' end.DH932298|Mus musculus domesticus DNA, BAC clone: B6Ng01-131C18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(162,518,793 - 162,519,915)(98,425,526 - 98,425,755)
sequence
gaattctcttgctctcaggcattagccacatccagcaggaaggccactct
cttaccatttctgcctgggttcctgagatttcaggaatcactgggaggca
agttgagaacccagaggtcaggagggaaatccccttgactaggcttcctc
taccgtacactctccaaagcaggaagactgcatgttacatacctgtcacc
agcatgaagaacccaggaggaagagctgacactacaaaaatacagtcata
aatactgtttgctgagcacttaccatatgccgtgcccgatgctaagcccc
atctcagttgggattctacaaaccagatcttggaacaaagttgtgacagc
agggagtttgtgtgtgatgtgatcctaggatgtacactgggagatgagac
aggagaggaaagaaagcaccaacaaaggggccagtagtcatcccagtgga
aaactggggaccctttgaagctctatgctcacgctgagaattatcctgca
gattgtgggggagctggaagtgtactcaccagctcccaattctattggct
gggaatcacacagatgacgtggaacttgtaaatgcccccaagtcagaaga
atgcttgggcagagagaattacagttgctccaggggaagggccagggcat
tcatggatgtcctggaaagcctgcaaatgacaggtgaacaagggatctca
aaagagctagaacaaagccaggacggcccctcccttgacagtttcatcag
ctacatggggtagtgaccaccactgtgtctatgttatggttgagtaaatg
aagacaaatacgatcaaggtcaccaagctgggaaggcagtgtgggatcta
ggcagccaaacccagagccaggagctgaggcagtgccctgcctggccttc
tccttgggctctttttagcccaccgagcagacacaaccacacagaatctg
tggcgttccagcctactttattcgttttcttgctgggtttaaggatgcac
cacaatgtttgtggctacacagagtgagtggctggctgataaaggtaaca
acctaccattcactttcttatggctgcccttttctataggggacgagaaa
atctaaattgacatgtttt
gaattctttgtgtcttccagttcctgcagcttctggcattccttagcatg
tggctatgctgctctaatctctgttctctgatatctcctggccttttcct
tttctccccatgtgtctcttggaaggacacttggcgattgattcatgtaa
tccagggttagcttgtttcaagacatttatattgacagagatcatttttc
gaaatacaggcaaatatataggttttagaggctacagaatgagcatatat
atttttatcatttatttatttactcactttataccctagctgcagccctc
ctcttttctctccttccagtcccacccttacaagtccctccctcattgtc
ccctctccttctccccagagatgggggagcccctcttggctaccactctg
ccctgggacatcaagtcacagcaggactgaggacatcttctaccactgaa
gctggactaggcagtcctgtcaggggaaggggatccaatggcaggcaaca
gagttagagacagcccctgctataattgttaagaaacccacatgaagtcc
aagctgcacatctgctataaacgtgttgggggcctagcttcaatccctga
atgatctttggttggtggttcagtctctgtgagcagccatgggcccaggc
tagttgtcaaaaatcaagtgtccataggtgtatgggtttatttcagggtt
ttcaattcaattttaattgattgacctgtgtttctgtaccaataccatcc
aatttttattactctgtagtacagcttgaggtcagagatggtgatatgtc
cagaggttcatatatatatatatatatggtattttccttatttacatttc
caatgctatcccaaaagtcccccatacactcccccccactcccctaccca
cccgctcccactttttggccctggcattcccctgtacccgggcatataaa
gtttgcaagtccaatgggctctctttccatgattggccgacatatgcagc
ttagagttaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_162518793_162519915
seq2: B6Ng01-131C18.b_45_1163

seq1  GAATTCTCTTGCTCTCAGGCATTAGCCACATCCAGCAGGAAGGCCACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGCTCTCAGGCATTAGCCACATCCAGCAGGAAGGCCACTCT  50

seq1  CTTACCATTTCTGCCTGGGTTCCTGAGATTTCAGGAATCACTGGGAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCATTTCTGCCTGGGTTCCTGAGATTTCAGGAATCACTGGGAGGCA  100

seq1  AGTTGAGAACCCAGAGGTCAGGAGGGAAATCCCCTTGACTAGGCTTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGAACCCAGAGGTCAGGAGGGAAATCCCCTTGACTAGGCTTCCTC  150

seq1  TACCGTACACTCTCCAAAGCAGGAAGACTGCATGTTACATACCTGTCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGTACACTCTCCAAAGCAGGAAGACTGCATGTTACATACCTGTCACC  200

seq1  AGCATGAAGAACCCAGGAGGAAGAGCTGACACTACAAAAATACAGTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGAAGAACCCAGGAGGAAGAGCTGACACTACAAAAATACAGTCATA  250

seq1  AATACTGTTTGCTGAGCACTTACCATATGCCGTGCCCGATGCTAAGCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGTTTGCTGAGCACTTACCATATGCCGTGCCCGATGCTAAGCCCC  300

seq1  ATCTCAGTTGGGATTCTACAAACCAGATCTTGGAACAAAGTTGTGACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTTGGGATTCTACAAACCAGATCTTGGAACAAAGTTGTGACAGC  350

seq1  AGGGAGTTTGTGTGTGATGTGATCCTAGGATGTACACTGGGAGATGAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTTTGTGTGTGATGTGATCCTAGGATGTACACTGGGAGATGAGAC  400

seq1  AGGAGAGGAAAGAAAGCACCAACAAAGGGGCCAGTAGTCATCCCAGTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGAAAGAAAGCACCAACAAAGGGGCCAGTAGTCATCCCAGTGGA  450

seq1  AAACTGGGGACCCTTTGAAGCTCTATGCTCACGCTGAGAATTATCCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGGGACCCTTTGAAGCTCTATGCTCACGCTGAGAATTATCCTGCA  500

seq1  GATTGTGGGGGAGCTGGAAGTGTACTCACCAGCTCCCAATTCTATTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGGGGGAGCTGGAAGTGTACTCACCAGCTCCCAATTCTATTGGCT  550

seq1  GGGAATCACACAGATGACGTGGAACTTGTAAATGCCCCCAAGTCAGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCACACAGATGACGTGGAACTTGTAAATGCCCCCAAGTCAGAAGA  600

seq1  ATGCTTGGGCAGAGAGAATTACAGTTGCTCCAGGGGAAGGGCCAGGGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGGGCAGAGAGAATTACAGTTGCTCCAGGGGAAGGGCCAGGGCAT  650

seq1  TCATGGATGTCCTGGAAAGCCTGCAAATGACAGGTGAACAAGGGATCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATGTCCTGGAAAGCCTGCAAATGACAGGTGAACAAGGGATCTCA  700

seq1  AAAGAGCTAGAACAAAGCCAGGACGGCCCCTCCCTTGACAGTTTCATCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCTAGAACAAAGCCAGGACGGCCCCTCCCTTGACAGTTTCATCAG  750

seq1  CTACATGGGGTAGTGACCACCACTGTGTCTATGTTATGGTTGAGTAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGGGGTAGTGACCACCACTGTGTCTATGTTATGGTTGAGTAAATG  800

seq1  AAGACAAATACGATCAAGGTCACCAAGCTGGGAAGGCAGTGTGGGATCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAATACGATCAAGGTCACCAAGCTGGGAAGGCAGTGTGGGATCTA  850

seq1  GGCAGCCAAACCCAGAGCCAGGAGCTGAGGCAGTGCCCTGCCTGGCCTCC  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGCAGCCAAACCCAGAGCCAGGAGCTGAGGCAGTGCCCTGCCTGGCCTTC  900

seq1  TCCCTGGGGCTCTTTTCAGCCCACCGAGCAGGACACAACCACACAGAATC  950
      | ||| |||||||||| ||||||||||||| |||||||||||||||||||
seq2  T-CCTTGGGCTCTTTTTAGCCCACCGAGCA-GACACAACCACACAGAATC  948

seq1  TGTGGCGTTCCAGCCTACTTTATTCGTTTTCTTGCTGGGTTTAAGGTATG  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTGGCGTTCCAGCCTACTTTATTCGTTTTCTTGCTGGGTTTAAGG-ATG  997

seq1  CACCACAATGTTTGTGGCTACACAGAGTGAAGTGGCTGGCTGATAAAGGT  1050
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CACCACAATGTTTGTGGCTACACAGAGTG-AGTGGCTGGCTGATAAAGGT  1046

seq1  AACAACCTAACCATCAC-TTCCTATGGCTGTCCTTTTCTTATAGGGGACG  1099
      ||||||||| |  |||| ||| |||||||| ||||||| |||||||||||
seq2  AACAACCTACCATTCACTTTCTTATGGCTGCCCTTTTC-TATAGGGGACG  1095

seq1  AGAACATCTAAAATTGAC-TGTTTT  1123
      |||| |||| |||||||| ||||||
seq2  AGAAAATCT-AAATTGACATGTTTT  1119

seq1: chr13_98425526_98425755
seq2: B6Ng01-131C18.g_875_1080 (reverse)

seq1  CTCTTGACTCT-AGCTGCATATGTATCAAAAGATGGCCTAGTCGGCC-AT  48
      ||||| ||||| ||||||||||                  ||||||| ||
seq2  CTCTTAACTCTAAGCTGCATAT------------------GTCGGCCAAT  32

seq1  CACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGTCCCAGTAC  98
      || |||||||||| ||||||||||||||||||||||||||| ||  ||||
seq2  CA-TGGAAAGAGA-GCCCATTGGACTTGCAAACTTTATATGCCCGGGTAC  80

seq1  AGGGGAACGCCAGGGCCAAAAAGTGGGAGTGGGTGGGTAGGGGAGTGGGG  148
      ||||||| ||||||||||||||||||||| |||||||||||||||| |||
seq2  AGGGGAATGCCAGGGCCAAAAAGTGGGAGCGGGTGGGTAGGGGAGT-GGG  129

seq1  GGGGAGGGTATGGGGGACTTTTGGGATAGCATTGGAAATGTAAATGAGGA  198
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  GGGGAGTGTATGGGGGACTTTTGGGATAGCATTGGAAATGTAAATAAGGA  179

seq1  AAATACCTAATTTTATATATATATATATATGA  230
      |||||||      |||||||||||||||||||
seq2  AAATACC-----ATATATATATATATATATGA  206