BAC Information

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BAC

Clone NameB6Ng01-131H24
Chromosome2 (Build37)
Map Location 31,431,440 - 31,589,932
singlet/doubletdoublet
Overlap geneFubp3, LOC100041465, Prdm12, Exosc2
Upstream geneCstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1
Downstream geneAbl1, BC094274, Fibcd1, Lamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131H24.bB6Ng01-131H24.g
ACCDH932542DH932543
length1,117966
definitionDH932542|Mus musculus domesticus DNA, BAC clone: B6Ng01-131H24, 5' end.DH932543|Mus musculus domesticus DNA, BAC clone: B6Ng01-131H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,588,818 - 31,589,932)(31,431,440 - 31,432,407)
sequence
gaattctaaatgtcacttaaaaacatgttaacaacttaggtagcccatct
ccggctcttgttggattttttatatttacaaagtaataaaagctcattct
ctatcactgttcaagatgactttcagacctcagagctcctcaatggtggg
cagtggggtgccaggcaaccaaagaatctctttagctttataaaataaag
agatctaaatcgcaacactactgactatagcaagtcagcaggtggaggct
ggactagcagagtcttcgtgtgctgtgcttgggcttcttctgcttatcat
taagaaaacactttcaaaaacaagagcaggggctggtgagatggctcagt
gggtaagagcacccgactgctcttccgaaggtccgaagttcaaatcccag
caaccacatggtggctcacaaccatccgtaacgagatctgacgccctctt
ctggagtgtctgaggacagctacagtgtacttacatataataaataaatc
tttaaaaaaaaaaaaaaaaaaaaaaaaaaacaagagcaaaggagcagcga
gctacaaggacagactattctgaaaccacttccaggaacagcacttgttt
aaacaatggcagtaagtgaaagcggctgttggaggccagagcatctgagt
agaacccactgcgtctgccagggaatgactccttcctagggctgtaaatg
ggtaggacgctcacagacaccatgtgagaaacactccccaggccagcctg
ctccgagctcccatccttctcataaatattgtgctgaaggaacatgaggg
accaagagcagtgaaagggtgaggtgaattcacatttcacatccatgata
atcttgagagagccatgaacagtcaataaagtcattgggtttaagtgatg
gtgctgtcacagaagccaatggccaaagtgctgcttgtaggttccagggg
gattcttaaaggctggctctctttcagttctgaaagctagcacagtcttc
aaggactacatgcaggcctaatgtgataaggttaatttatttagatcatt
ttccttactttgcaacaagagcttagacaagaattgttcctgggtggacc
ctttctcgaaagtcctg
gaattcagtttgttaagcctaattgcatagctctattgtaactgggctgc
ttttctttcttgaagcatctttatgtagatgtcttcaggtttataacagt
tatctatgtttgctattagtgtacttgagtaaggaattcttaaatacaaa
gggaatctctgaagatccatataaaacttaaaaatatttctagagtgggg
gcccagtggattattgtgtgtcaggaatgaagaattcacagctgttctga
agggcagtggagataggatctgatttgggactactgataaagtctaagac
gctagatagagctctggctgcttagcaaatcaagtgttcctttaacttgt
ttaagagaagactgggtgctgactttcagctcatcttgttccagaatcat
attctgcatctgtgccctgagtgggctacaagcgggaccagtggacacaa
gtctgttttactttgaatagtttctgaggatgattaaaaatgttcctggc
ctgagagtgcttgcctactgtgcatggtttataggattgggttcagcccc
cagagccatataaactaagcctggtggcacatatctatgcaatcccagga
cttgagaggtcgaggcgggatgatcaggaagttccaggttgtcctcagcc
acatagcaagcatagcgagtgaggccagactggggatgcctgagaacctg
tccaaaaggtaaaaacgttcccagaacagaacagtgttggccatccgatg
aagacggactcgttaatgggttgtgggccatcacagtgttacagctgcca
acagcttcccactagcttcctgaggataggttattttgctaaagtcaatg
cttgttaggactttagctcctgtttgtggtggaagtggttttactgaggc
cagggttctgctgtgtagttcttctgctggctcaaactcatgctcctcct
gccttgtttcctaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_31588818_31589932
seq2: B6Ng01-131H24.b_47_1163 (reverse)

seq1  CAGGACTT--CAGCAAGGGTCACCCCAGGAACAATCTGTGTCTTATGCTC  48
      ||||||||   || |||||||  ||||||||||||   |||| || ||||
seq2  CAGGACTTTCGAGAAAGGGTCCACCCAGGAACAATTCTTGTC-TAAGCTC  49

seq1  TTGTTGTCAAGTTAAGGAAAATGATCTAAATAATTAAACCTTATCACATA  98
      |||||| |||  ||||||||||||||||||||| | ||||||||||||| 
seq2  TTGTTG-CAAAGTAAGGAAAATGATCTAAATAAATTAACCTTATCACATT  98

seq1  GGCCCTGCATGTAGTCCTTG-AGACTTGTGCTAGCTTTCAG-ACTGGAAG  146
       | ||||||||||||||||| |||| ||||||||||||||| |||| |||
seq2  AGGCCTGCATGTAGTCCTTGAAGAC-TGTGCTAGCTTTCAGAACTGAAAG  147

seq1  AG-GCAAGCCTTTTAGAATCCCCCTGGAACCTACAAGCAGCACTTTGGCC  195
      || || ||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAGCCTTTAAGAATCCCCCTGGAACCTACAAGCAGCACTTTGGCC  197

seq1  ATTGGCTTCTGTGACAGCACCATCACTTAAACCCAATGACTTTATTGACT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTTCTGTGACAGCACCATCACTTAAACCCAATGACTTTATTGACT  247

seq1  GTTCATGGCTCTCTCAAGATTATCATGGGATGTGAAATGTGAATTCACCT  295
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTTCATGGCTCTCTCAAGATTATCAT-GGATGTGAAATGTGAATTCACCT  296

seq1  CACCC-TTCACTGCTCTTGGTCCCTCATGTTCCTTCAGCACAATATTTAT  344
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTTCACTGCTCTTGGTCCCTCATGTTCCTTCAGCACAATATTTAT  346

seq1  GAGAAGGATGGGAGCTCGGAGCAGGCTGGCCTGGGGAGTGTTTCTCACAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGATGGGAGCTCGGAGCAGGCTGGCCTGGGGAGTGTTTCTCACAT  396

seq1  GGTGTCTGTGAGCGTCCTACCCATTTACAGCCCTAGGAAGGAGTCATTCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTGTGAGCGTCCTACCCATTTACAGCCCTAGGAAGGAGTCATTCC  446

seq1  CTGGCAGACGCAGTGGGTTCTACTCAGATGCTCTGGCCTCCAACAGCCGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGACGCAGTGGGTTCTACTCAGATGCTCTGGCCTCCAACAGCCGC  496

seq1  TTTCACTTACTGCCATTGTTTAAACAAGTGCTGTTCCTGGAAGTGGTTTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTTACTGCCATTGTTTAAACAAGTGCTGTTCCTGGAAGTGGTTTC  546

seq1  AGAATAGTCTGTCCTTGTAGCTCGCTGCTCCTTTGCTCTTGTTTTTTTTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGTCTGTCCTTGTAGCTCGCTGCTCCTTTGCTCTTGTTTTTTTTT  596

seq1  TTTTTTTTTTTTTTTTTTAAAGATTTATTTATTATATGTAAGTACACTGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTAAAGATTTATTTATTATATGTAAGTACACTGT  646

seq1  AGCTGTCCTCAGACACTCCAGAAGAGGGCGTCAGATCTCGTTACGGATGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCCTCAGACACTCCAGAAGAGGGCGTCAGATCTCGTTACGGATGG  696

seq1  TTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTCGGACCTTCGGAAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTCGGACCTTCGGAAG  746

seq1  AGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCTGCTCTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCTGCTCTT  796

seq1  GTTTTTGAAAGTGTTTTCTTAATGATAAGCAGAAGAAGCCCAAGCACAGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGAAAGTGTTTTCTTAATGATAAGCAGAAGAAGCCCAAGCACAGC  846

seq1  ACACGAAGACTCTGCTAGTCCAGCCTCCACCTGCTGACTTGCTATAGTCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAAGACTCTGCTAGTCCAGCCTCCACCTGCTGACTTGCTATAGTCA  896

seq1  GTAGTGTTGCGATTTAGATCTCTTTATTTTATAAAGCTAAAGAGATTCTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTTGCGATTTAGATCTCTTTATTTTATAAAGCTAAAGAGATTCTT  946

seq1  TGGTTGCCTGGCACCCCACTGCCCACCATTGAGGAGCTCTGAGGTCTGAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCCTGGCACCCCACTGCCCACCATTGAGGAGCTCTGAGGTCTGAA  996

seq1  AGTCATCTTGAACAGTGATAGAGAATGAGCTTTTATTACTTTGTAAATAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCTTGAACAGTGATAGAGAATGAGCTTTTATTACTTTGTAAATAT  1046

seq1  AAAAAATCCAACAAGAGCCGGAGATGGGCTACCTAAGTTGTTAACATGTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCCAACAAGAGCCGGAGATGGGCTACCTAAGTTGTTAACATGTT  1096

seq1  TTTAAGTGACATTTAGAATTC  1115
      |||||||||||||||||||||
seq2  TTTAAGTGACATTTAGAATTC  1117

seq1: chr2_31431440_31432407
seq2: B6Ng01-131H24.g_68_1033

seq1  GAATTCAGTTTGTTAAGCCTAATTGCATAGCTCTATTGTAACTGGGCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTGTTAAGCCTAATTGCATAGCTCTATTGTAACTGGGCTGC  50

seq1  TTTTCTTTCTTGAAGCATCTTTATGTAGATGTCTTCAGGTTTATAACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCTTGAAGCATCTTTATGTAGATGTCTTCAGGTTTATAACAGT  100

seq1  TATCTATGTTTGCTATTAGTGTACTTGAGTAAGGAATTCTTAAATACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATGTTTGCTATTAGTGTACTTGAGTAAGGAATTCTTAAATACAAA  150

seq1  GGGAATCTCTGAAGATCCATATAAAACTTAAAAATATTTCTAGAGTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCTCTGAAGATCCATATAAAACTTAAAAATATTTCTAGAGTGGGG  200

seq1  GCCCAGTGGATTATTGTGTGTCAGGAATGAAGAATTCACAGCTGTTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTGGATTATTGTGTGTCAGGAATGAAGAATTCACAGCTGTTCTGA  250

seq1  AGGGCAGTGGAGATAGGATCTGATTTGGGACTACTGATAAAGTCTAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGTGGAGATAGGATCTGATTTGGGACTACTGATAAAGTCTAAGAC  300

seq1  GCTAGATAGAGCTCTGGCTGCTTAGCAAATCAAGTGTTCCTTTAACTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGATAGAGCTCTGGCTGCTTAGCAAATCAAGTGTTCCTTTAACTTGT  350

seq1  TTAAGAGAAGACTGGGTGCTGACTTTCAGCTCATCTTGTTCCAGAATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGAAGACTGGGTGCTGACTTTCAGCTCATCTTGTTCCAGAATCAT  400

seq1  ATTCTGCATCTGTGCCCTGAGTGGGCTACAAGCGGGACCAGTGGACACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCATCTGTGCCCTGAGTGGGCTACAAGCGGGACCAGTGGACACAA  450

seq1  GTCTGTTTTACTTTGAATAGTTTCTGAGGATGATTAAAAATGTTCCTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTTACTTTGAATAGTTTCTGAGGATGATTAAAAATGTTCCTGGC  500

seq1  CTGAGAGTGCTTGCCTACTGTGCATGGTTTATAGGATTGGGTTCAGCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGTGCTTGCCTACTGTGCATGGTTTATAGGATTGGGTTCAGCCCC  550

seq1  CAGAGCCATATAAACTAAGCCTGGTGGCACATATCTATGCAATCCCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCATATAAACTAAGCCTGGTGGCACATATCTATGCAATCCCAGGA  600

seq1  CTTGAGAGGTCGAGGCGGGATGATCAGGAAGTTCCAGGTTGTCCTCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAGGTCGAGGCGGGATGATCAGGAAGTTCCAGGTTGTCCTCAGCC  650

seq1  ACATAGCAAGCATAGCGAGTGAGGCCAGACT-GGGATGCCTGAGAACCTG  699
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACATAGCAAGCATAGCGAGTGAGGCCAGACTGGGGATGCCTGAGAACCTG  700

seq1  TCCAAAAGGTAAAAACGTTCCCAGAACAGAACAGTGTTGGCCATCCGATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAGGTAAAAACGTTCCCAGAACAGAACAGTGTTGGCCATCCGATG  750

seq1  AAGACGGACTCGTTAATGGGTTGTGGGCCATCACAGTGTTACAGCTGCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGGACTCGTTAATGGGTTGTGGGCCATCACAGTGTTACAGCTGCCA  800

seq1  ACAGCTTCCCACTAGCTTTCCTGAGGATAGGTTATTTTGCTAAAGTCAAT  849
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACAGCTTCCCACTAGC-TTCCTGAGGATAGGTTATTTTGCTAAAGTCAAT  849

seq1  GCTTGTTAGGACTTTAAGCTCCTGTTTGTTGTGGAGGTGGTTTTACTGAG  899
      ||||||||||||||| ||||||||||||| ||||| ||||||||||||||
seq2  GCTTGTTAGGACTTT-AGCTCCTGTTTGTGGTGGAAGTGGTTTTACTGAG  898

seq1  G-CAGGGTTCTGCTGTGTAGTTCTTCTGCTGGCCTCAAACTCATGCTCCT  948
      | |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCCAGGGTTCTGCTGTGTAGTTCTTCTGCTGG-CTCAAACTCATGCTCCT  947

seq1  CCTGCCTTAGTTTCCTAAGA  968
      |||||||| |||||||||||
seq2  CCTGCCTT-GTTTCCTAAGA  966