BAC Information

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BAC

Clone NameB6Ng01-134N11
Chromosome2 (Build37)
Map Location 126,694,510 - 126,695,549
singlet/doubletsinglet
Overlap geneTrpm7
Upstream geneGalk2, Fgf7, Dtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50
Downstream gene2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134N11.bB6Ng01-134N11.g
ACCDH935037DH935038
length1,042125
definitionDH935037|Mus musculus domesticus DNA, BAC clone: B6Ng01-134N11, 5' end.DH935038|Mus musculus domesticus DNA, BAC clone: B6Ng01-134N11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacatgtttttagttaataaaaaccctaattacaatacatacatt
cacatgtgttatttgtgaaatgtttagttaccttaaaacaaaatttactg
tcttagtcagggtttctaatcctgcacaaacatcaagaagcaattgggga
ggaaatggtttattcagcttacacttccatactgcagttcatcaccaaag
gaagtcaggactggaactcaagcaggtcagaaagcaggagctgatgcaga
ggccatggagggatgttccttaatggcttgcttcccctggcttgctcagc
ttgcttcttatagaacccaagactaccagcccagggatagtaccacccac
aaggagccctccccacttgatcactaattgagaaaatgccttacagctgg
atctaatggaggcatttcctcacctgaagctcctttctctgtgataactc
cagtttgtgtcaagttgacacacaaaaccagccagtacatttagtaacaa
aaaaaagtctaacaagcacccttaaaacagctagctagataaggaaatca
gtagcatttcttatagctatcagaaactcattaatttttgtgacaatagg
tagtaaaaaatcccaaaggatcggtgggcctcagttaactaaaggttcgt
tttgctaatccactatcacaattccagtcttaaaacattccaagtagcag
aaggaggaaggacatgggaaaaggtgaggttgctgaaaacataaagagtg
cctcttttggcaccctattggctctggaacaacaaacaaggtctgagact
gaagaggaacacagaagctttgaggtgagtcagtaactgaggcagggccc
acaagagtaagagtctgtggggtccaggatgaaacactgggatgggcgtc
aggaactagctatctttcttggctatcaagtatttttagtcaggttaaaa
atgtcacagtctgagccagatccattcctacagtgctgctcaaagtaaat
ccaagcagctctgaacatgtgggggggggaggttgagagggg
aaaaggctcaacaagctgaagtgcctaagtgaggacacttcagtcccact
tgggagagagaagaaagcaatcataagtggggagggagagaggaacctgg
gagggaaagtggatggggagggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_126694510_126695549
seq2: B6Ng01-134N11.b_48_1089

seq1  GAATTCACATGTTTTTAGTTAATAAAAACCCTAATTACAATACATACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGTTTTTAGTTAATAAAAACCCTAATTACAATACATACATT  50

seq1  CACATGTGTTATTTGTGAAATGTTTAGTTACCTTAAAACAAAATTTACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGTTATTTGTGAAATGTTTAGTTACCTTAAAACAAAATTTACTG  100

seq1  TCTTAGTCAGGGTTTCTAATCCTGCACAAACATCAAGAAGCAATTGGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTCAGGGTTTCTAATCCTGCACAAACATCAAGAAGCAATTGGGGA  150

seq1  GGAAATGGTTTATTCAGCTTACACTTCCATACTGCAGTTCATCACCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGGTTTATTCAGCTTACACTTCCATACTGCAGTTCATCACCAAAG  200

seq1  GAAGTCAGGACTGGAACTCAAGCAGGTCAGAAAGCAGGAGCTGATGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAGGACTGGAACTCAAGCAGGTCAGAAAGCAGGAGCTGATGCAGA  250

seq1  GGCCATGGAGGGATGTTCCTTAATGGCTTGCTTCCCCTGGCTTGCTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGGAGGGATGTTCCTTAATGGCTTGCTTCCCCTGGCTTGCTCAGC  300

seq1  TTGCTTCTTATAGAACCCAAGACTACCAGCCCAGGGATAGTACCACCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTTATAGAACCCAAGACTACCAGCCCAGGGATAGTACCACCCAC  350

seq1  AAGGAGCCCTCCCCACTTGATCACTAATTGAGAAAATGCCTTACAGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCCCTCCCCACTTGATCACTAATTGAGAAAATGCCTTACAGCTGG  400

seq1  ATCTAATGGAGGCATTTCCTCACCTGAAGCTCCTTTCTCTGTGATAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATGGAGGCATTTCCTCACCTGAAGCTCCTTTCTCTGTGATAACTC  450

seq1  CAGTTTGTGTCAAGTTGACACACAAAACCAGCCAGTACATTTAGTAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTGTCAAGTTGACACACAAAACCAGCCAGTACATTTAGTAACAA  500

seq1  AAAAAAGTCTAACAAGCACCCTTAAAACAGCTAGCTAGATAAGGAAATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTCTAACAAGCACCCTTAAAACAGCTAGCTAGATAAGGAAATCA  550

seq1  GTAGCATTTCTTATAGCTATCAGAAACTCATTAATTTTTGTGACAATAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATTTCTTATAGCTATCAGAAACTCATTAATTTTTGTGACAATAGG  600

seq1  TAGTAAAAAATCCCAAAGGATCGGTGGGCCTCAGTTAACTAAAGGTTCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAAAATCCCAAAGGATCGGTGGGCCTCAGTTAACTAAAGGTTCGT  650

seq1  TTTGCTAATCCACTATCACAATTCCAGTCTTAAAACATTCCAAGTAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAATCCACTATCACAATTCCAGTCTTAAAACATTCCAAGTAGCAG  700

seq1  AAGGAGGAAGGACATGGGAAAAGGTGAGGTTGCTGAAAACATAAAGAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGAAGGACATGGGAAAAGGTGAGGTTGCTGAAAACATAAAGAGTG  750

seq1  CCTCTTTTGGCACCCTATTGGCTCTGGAACAACAAACAAGGTCTGAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTGGCACCCTATTGGCTCTGGAACAACAAACAAGGTCTGAGACT  800

seq1  GAAGAGGAACACAGAAGCTTTGAGGTGAGTCAGTAACTGAGGCA-GGCCC  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAAGAGGAACACAGAAGCTTTGAGGTGAGTCAGTAACTGAGGCAGGGCCC  850

seq1  ACAAGAGTAAGAGTCTGT-GGGTCCAGGATGAAACACTGGGATGGGCGTC  898
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACAAGAGTAAGAGTCTGTGGGGTCCAGGATGAAACACTGGGATGGGCGTC  900

seq1  AGGAACTAGCTATCTTTCTTGGCTATCAAGTA-TTTTAGTCAGGTTAAAA  947
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGGAACTAGCTATCTTTCTTGGCTATCAAGTATTTTTAGTCAGGTTAAAA  950

seq1  ATGTCACAGTTCTGAGCCAGATCCATTCCTACAGTGCTGCTCAAAGTAAA  997
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACAG-TCTGAGCCAGATCCATTCCTACAGTGCTGCTCAAAGTAAA  999

seq1  TCCAAGCAGCCCTGGAACATGT-GGGTGGGGAGGTTGAGAGGGG  1040
      |||||||||| || |||||||| ||| |||||||||||||||||
seq2  TCCAAGCAGCTCT-GAACATGTGGGGGGGGGAGGTTGAGAGGGG  1042