BAC Information

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BAC

Clone NameB6Ng01-135B22
Chromosome2 (Build37)
Map Location 175,872,725 - 175,873,915
singlet/doubletsinglet
Overlap geneLOC626832
Upstream geneLOC545487, LOC100043760, LOC100043761, LOC620790, LOC665001, LOC100043762, LOC100043763, LOC100043764, LOC100043914, LOC100043915, LOC668009, LOC100038953, LOC620804, LOC100039000, LOC100043126, LOC100039017, LOC100039036, LOC100039049
Downstream geneOTTMUSG00000016203, LOC100039060, LOC668030, LOC627914, LOC100039093, LOC668039, LOC100039109, LOC100043381, LOC100043387, LOC100039123, LOC626877, LOC100039156, LOC100039166, 6230416C02Rik, LOC635470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135B22.bB6Ng01-135B22.g
ACCDH935242DH935243
length1,1831,176
definitionDH935242|Mus musculus domesticus DNA, BAC clone: B6Ng01-135B22, 5' end.DH935243|Mus musculus domesticus DNA, BAC clone: B6Ng01-135B22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccattttaggatctgtattatgagatatgtgcaatccttgggtg
acatgtttaagtgagcccacaaatattaaacacatgacattatctgtagc
tgtgtgtgtcacattgtagacatcagtagttaacaaagcacttaggggca
aggtcaaacactatcttattaatgccattccttctaccaagaagggcctg
atctttttcaaatcagtacagtgatatattttactaatataggtgtaggt
ttgttgttgttatgtttgttttaccaacctagtgaggacaattgttctaa
ttaatgcactgagtgctccacagtgtcatgtgtcctgctttgctctgagc
cttgtctcatagccattaggtagaaagtacttgcaatttacctgaaccca
gcctgaagccacaaaacaaaatcttatatcctaaaatccctcttcagttg
ctaatattctggcactgaccacctgtggacagtttggtaactccagtgtc
agctgattgatggggtatgcaagctatccagcttgattccaggaggaaga
aggggaaatgtctcctgagtgctggatttggagctcaggcaagctccaaa
gcagtgaacccagggtcactgaccagaaaggtggagaggcaggcaggtaa
gcagcagggatcaggaatcttagcccctcccaagggcttggcgggagaac
agacaggtaggctattggaggagacacactagtgctactgaactggaaat
ctgcagatatggaaaaggattggcccaggctggaaccattgtgctgtgtc
cctacagacactctgaccctaagcatggtcctcatgtcactcaagactca
atggccaatcaaaacctccacatggagttgccaggcagaataggagtgac
tcttccaggtactaagcctgcaagtgtctctgtgtaactcagctgctctc
agattttctgtgaatcggttcttattatttttactgagtgctgtggagtt
agctcagcaagcttagaacttcagacatggtaagttgcaacttcctcttc
cacgaagtgggggtgagcaagcatctttgcaaggatgctcatgtaatagg
ccttcccgaaggtaggatggtaagccatcagccgaacaagatggggcccc
tgtagagtacctttgcgaacttagtctctcctt
gaattctcacccgaggaataccgaaaggctgagaaacacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaagcaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaaacttgtacaaccactctggaaatcagtctggcggttcctcc
gaaaattggacatagtactactggaggatcccgcaatgcctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccaaaacctggaaagaacccagat
gtccctcaacagaggaatggatataaaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaattcacgaaattcctaggcaa
atggttggacctggaaggcatcatcctgagtgaggcaacccaatcacaaa
agaactcaaatgaaatgtactcactgataagtggatattaacccagaaac
ttagtatagcgatatataaggtacaatatgtaaaacatatgaaactgaag
aagaacgaagacaaaagtgtggacactttgctcattcttagaattggaaa
caatcacccatggaaggagttacagagacaaagtttggaggtgagacaaa
aggatggtccatctagagactgccatatccagggatccatcccataatta
gcctccaagcgatgacaccattgcatacactagcaagcctttgttgcaag
gacagtgatatagctgtcccttgtgagactaggccggggcctagcaaaca
cagagtggatgctcacagtcaactattggatggatcacagggtccccaat
ggagagctagagaagtatccaaggagctaagagatctgcacccttatcgg
tggaacaacattatgaactaaccagtaccccagaggatcttgaatctagc
tgcatattgtattcaaagatgacctagtcagccattcactggaagagagc
ccattgttcaggccacatttatatccagttaaggggatgcaaggcaaaaa
tgcaatgggtgggggtagggaagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_175872725_175873915
seq2: B6Ng01-135B22.b_46_1228

seq1  GAATTCCCATTTTAGGATCTGTATTATGAGATATGTGCAATCCTTGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTTTAGGATCTGTATTATGAGATATGTGCAATCCTTGGGTG  50

seq1  ACATATTTAAGTGAGCCCACAAATATTAAACACATGACATTATCTGTAGC  100
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTTAAGTGAGCCCACAAATATTAAACACATGACATTATCTGTAGC  100

seq1  TGTGTGTGTCACATTGTAGACATCAGTAGTTAACAAAGCACTTAGGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTCACATTGTAGACATCAGTAGTTAACAAAGCACTTAGGGGCA  150

seq1  AGGTCAAACACTATCTTATTAATGCCATTCCTTCTACCAAGAAGGGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAACACTATCTTATTAATGCCATTCCTTCTACCAAGAAGGGCCTG  200

seq1  GTCTTTTTCAAATCAGAACAGTGATATATTTTACTAATATAGGTGTGGGT  250
       ||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  ATCTTTTTCAAATCAGTACAGTGATATATTTTACTAATATAGGTGTAGGT  250

seq1  TTGTTGTTGTTATGTTTGTTTTACCAACCCAGTGAGGACAATTGTTCTGA  300
      ||||||||||||||||||||||||||||| |||||||||||||||||| |
seq2  TTGTTGTTGTTATGTTTGTTTTACCAACCTAGTGAGGACAATTGTTCTAA  300

seq1  TTAATGCACTGAGTGCTCCTCAGTGACATGTGTCCTGCTTTGCTCTGAGC  350
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  TTAATGCACTGAGTGCTCCACAGTGTCATGTGTCCTGCTTTGCTCTGAGC  350

seq1  CTTGTCTCATAGCCATTAGGTAGAAAGTACTTGCAATTTACCTGAACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTCATAGCCATTAGGTAGAAAGTACTTGCAATTTACCTGAACCCA  400

seq1  GCCTGAAGCCACAAAACAAAATCTTATATCCTAAAATCCCTCTTCAGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAAGCCACAAAACAAAATCTTATATCCTAAAATCCCTCTTCAGTTG  450

seq1  CTAATATTCTGGCACTGACCACCTGTGGACAGTTTGGTAACTCCAGTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATTCTGGCACTGACCACCTGTGGACAGTTTGGTAACTCCAGTGTC  500

seq1  AGCTGATTGATGGGGTATGCAAGCTACCCAGCTTGATTCCAGGAGGAAGA  550
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGCTGATTGATGGGGTATGCAAGCTATCCAGCTTGATTCCAGGAGGAAGA  550

seq1  AGGGGAAATGCCTCCTGAGCGCTGGATTTGGAGCTCAGGCAAGCTCCAAC  600
      |||||||||| |||||||| ||||||||||||||||||||||||||    
seq2  AGGGGAAATGTCTCCTGAGTGCTGGATTTGGAGCTCAGGCAAGCTC----  596

seq1  CTTTCAAAGCAGTGAACCCAGGGTCACTGACCAGAAAGGTGGAGAGGCAG  650
          ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ----CAAAGCAGTGAACCCAGGGTCACTGACCAGAAAGGTGGAGAGGCAG  642

seq1  GCAGGTAAGCAGCAGGGATCAAGAATCTTAGCCCCTCAGAAGGGCTTGGC  700
      ||||||||||||||||||||| |||||||||||||||  |||||||||||
seq2  GCAGGTAAGCAGCAGGGATCAGGAATCTTAGCCCCTCCCAAGGGCTTGGC  692

seq1  AGGGGATCAGACAGGTAGGCCATTGGAGGAGACACACTAGTGCTACTGAA  750
       || || ||||||||||||| |||||||||||||||||||||||||||||
seq2  GGGAGAACAGACAGGTAGGCTATTGGAGGAGACACACTAGTGCTACTGAA  742

seq1  CTGGAAATCTGCAGATATGGAAAAGGATTGGCCCAGGCTCGAACCATTGT  800
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTGGAAATCTGCAGATATGGAAAAGGATTGGCCCAGGCTGGAACCATTGT  792

seq1  GCTGTGTCCCTACAGACACTCTGACCCTAAGCATGGTCCTCATGTCACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTCCCTACAGACACTCTGACCCTAAGCATGGTCCTCATGTCACTC  842

seq1  AAGACTCAATGGCCAATCAAAACCTCCACATGGAGTTGCCAGGCAGAAGA  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGACTCAATGGCCAATCAAAACCTCCACATGGAGTTGCCAGGCAGAATA  892

seq1  GGAGGTGACTCTTCCAGGTACTAAGCCTGCAAGTTTCTCTGTGTAACTCA  950
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGA-GTGACTCTTCCAGGTACTAAGCCTGCAAGTGTCTCTGTGTAACTCA  941

seq1  GCTGCTCTCAGATTTTCTGTGGAATCGGTTCTTATTATTTTTACTGAATG  1000
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  GCTGCTCTCAGATTTTCTGT-GAATCGGTTCTTATTATTTTTACTGAGTG  990

seq1  CTGTGAGGTTAGCTCAGGCAAGCTTAGAACTTCAGACATGGTAAG-TGCA  1049
      |||||  ||||||||| |||||||||||||||||||||||||||| ||||
seq2  CTGTGGAGTTAGCTCA-GCAAGCTTAGAACTTCAGACATGGTAAGTTGCA  1039

seq1  ACTTCATCTCCAACGAAGT-GGGGTGAGCAAGCATCTTAGCAAAGGATGC  1098
      ||||| ||| | ||||||| |||||||||||||||||| || ||||||||
seq2  ACTTCCTCTTCCACGAAGTGGGGGTGAGCAAGCATCTTTGC-AAGGATGC  1088

seq1  CTGTGTAATAGGTCTTCCCAGAGGCAGGATGGTAAGCC-TCAGCCAGAC-  1146
         ||||||||| ||||||  ||| ||||||||||||| ||||||  || 
seq2  TCATGTAATAGGCCTTCCCGAAGGTAGGATGGTAAGCCATCAGCCGAACA  1138

seq1  AGATGGGGCCACCTGT-GAGGTCCCTTGTGGACTTAGTCTCTCCTT  1191
      |||||||||| ||||| |||  || ||| | |||||||||||||||
seq2  AGATGGGGCC-CCTGTAGAGTACCTTTGCGAACTTAGTCTCTCCTT  1183