BAC Information

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BAC

Clone NameB6Ng01-135N04
Chromosome19 (Build37)2 (Build37)
Map Location 8,166,496 - 8,166,90160,663,456 - 60,664,658
singlet/doubletsingletsinglet
Overlap geneEG434674
Upstream geneD930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik
Downstream geneLOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135N04.bB6Ng01-135N04.g
ACCDH935765DH935766
length1,0321,181
definitionDH935765|Mus musculus domesticus DNA, BAC clone: B6Ng01-135N04, 5' end.DH935766|Mus musculus domesticus DNA, BAC clone: B6Ng01-135N04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(8,166,496 - 8,166,901)(60,663,456 - 60,664,658)
sequence
gaattccagagatagaatggtcaacacaataaccctggagaagtgtaagc
tttttaaaatgtttgccatacccaagtaattaactatagaccaattgatg
acaattcttacactatcaataatgatcattattttatttgacacaaaaat
ctgtgaaattgattctaaaaagaaattaaaggcaatatttatagatctcc
acaactaaactttgtaatatataaatacatatttatatgtaaattatata
taaatatattatatataaaattgatattataaaattcaatgcaacatctc
tttccctgtccttcactctgattctccacttgctacttttcagttagcca
tagtgagaacagccactgcctaactctctccatggctggtggggctgctc
ctgtatgcataccttcctcatcatggtaggtggaaacttgagaaaccaga
actaaaacatgccttcctttacttttttttaattaggtattttcctcatt
tacatttacaatgctatcacaaaagtcccccataccctcccccccccact
cccctacccacccattcccactttttggccctggcattcccctgtactgg
ggcatataaagtttgcaagtccaatgggcctctctttccagtgatggctg
actaggccatcttttgatacatatgcagctatagccatgagctccggggt
actggttagttcataatgttgttccacctatagggttgcagataccttta
gctcctggggtactttctctagcttctccatttgggggccctgtgatcca
tccaatagctgactgtgagcatccacttctgtgtttgctaggcccccggc
atagtctcacaagagacagctatatcggggtcctttcagcaaaatcttgc
tagtgtatgcatggtgtcagcgtttggagctgattatgggatgggtccct
ggatatggcagtctctagatggtccatcctttcgtctcaggtccaaactt
ggtctctgtaactccttccatgggtgttttgt
gaattccaggacagccagggctacacagagaaaccctgtctcaaaacaaa
caaacaaacaaacaaacaaacaaaaaacaaacaacaaaaaaagaaagcca
gattaattagaagcatgtatttcttgatgataatggaagatagctcagct
aataattacttgggattactgttttgtacaggggctttaataataacaat
aataataacagcccaaacaaaaaacccaaacatgcatttgagtacattta
agtacacacacacacacacacacacacacacaccaccaccaaccaccacc
accaccaccaaacaaaccaaaaaaaaaaaaaaaaaaaaaaaagaaaccct
gaaattagtcaaggctctagttctgtagaaacagagtggccttttctttc
tccttgctttggaccagagccagaagtaaatctgctgggagttctgagaa
cttgtaactggcatgctgggtgtggtgagttacttgtggtcctgtgagta
gggagggaatctgaggccaagcaggaagagtgtcctcattcacgtattag
cagctccactggagaaggcacaggtgctagcatgtggccactggctctga
cccctggctctgtttggcgatatcaccagtgtagagcatgcagctggttt
attcgtcattctttaatctattcagttacggtggctagccttctcacaaa
aagtggatgatgctacagaaacatacctaacaagataacagtaaacagat
gagaaaaacaggatgagggagaaaaatttgtatcattccttcaccacggc
ctttccaacactgagtgatccacattccctcacagcagcttagcaaggga
ggggagtaactgattctacttggtcatcaagatacaattctatataatct
gggctctacactcaacaccccaattttcttggtgatatatacagaggcat
tttatttcttaattaaaactattactgaaattgcatgtatgtatgcatag
ccagcaaattgattaaatgtgatctaccttatgcatgaatgtggcccaat
tcctgtggggtgtacaatgtacaaaccttgccatgtgtgtaggctgagga
cacacgtgattccttctagacagcactccactctcttgaatggccttcag
ttaggccagaccgatagccgaaagtcctaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_8166496_8166901
seq2: B6Ng01-135N04.b_664_1069 (reverse)

seq1  CCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACAAAAGGATGG  50
      |||||||||||||||||||||| ||||||||| ||||||| |||||||||
seq2  CCATGGAAGGAGTTACAGAGACCAAGTTTGGACCTGAGACGAAAGGATGG  50

seq1  ACCATCTATTGATTGCCATATCCAGAGATACATCCCATGATCACCTTCCA  100
      ||||||||  || |||||||||||| ||  |||||||| |||| | ||||
seq2  ACCATCTAGAGACTGCCATATCCAGGGACCCATCCCATAATCAGC-TCCA  99

seq1  AACGCTGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCAG  150
      ||||||||||||| |||||||||||||||||||||||||||||||||| |
seq2  AACGCTGACACCA-TGCATACACTAGCAAGATTTTGCTGAAAGGACCCCG  148

seq1  ATATAGCTGTCTCTTGTAAGACTATGCC-AGAGCCTAGCAAACACAGAAG  199
      ||||||||||||||||| ||||||||||  | ||||||||||||||||||
seq2  ATATAGCTGTCTCTTGTGAGACTATGCCGGGGGCCTAGCAAACACAGAAG  198

seq1  TGGATGCTCACAGTCAGCTGTTGAATGCACCACAGGGCCCCC-AATGGAG  248
      ||||||||||||||||||| ||| ||| | |||||||||||| |||||||
seq2  TGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAAATGGAG  248

seq1  GAATTAGAGAAAGCACCCAAGGAACTAAAGGGAACTGCAACCCTATAGGT  298
       |  ||||||||| |||| |||| ||||||| | ||||||||||||||||
seq2  AAGCTAGAGAAAGTACCCCAGGAGCTAAAGGTATCTGCAACCCTATAGGT  298

seq1  GGAACAACAATATGAACTAAGTAGTACCCCGGAGCTCTTGTCTCTAGCTG  348
      ||||||||| ||||||||||  ||||||||||||||| || || ||||||
seq2  GGAACAACATTATGAACTAACCAGTACCCCGGAGCTCATGGCTATAGCTG  348

seq1  CATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGAAAAGAGAGGCCC  398
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  CATATGTATCAAAAGATGGCCTAGTCAGCCATCACTGGAAAGAGAGGCCC  398

seq1  ATTGGACT  406
      ||||||||
seq2  ATTGGACT  406

seq1: chr2_60663456_60664658
seq2: B6Ng01-135N04.g_69_1249

seq1  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAACAAA  50

seq1  CAAACAAACAAACAAACAAACAAAAAACAAACAACAAAAAAAGAAAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACAAACAAACAAAAAACAAACAACAAAAAAAGAAAGCCA  100

seq1  GATTAATTAGAAGCATGTATTTCTTGATGATAATGGAAGATAGCTCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATTAGAAGCATGTATTTCTTGATGATAATGGAAGATAGCTCAGCT  150

seq1  AATAATTACTTGGGATTACTGTTTTGTACAGGGGCTTTAATAATAACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTACTTGGGATTACTGTTTTGTACAGGGGCTTTAATAATAACAAT  200

seq1  AATAATAACAGCCCAAACAAAAAACCCAAACATGCATTTGAGTACATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAACAGCCCAAACAAAAAACCCAAACATGCATTTGAGTACATTTA  250

seq1  AGTACACACACACACACACACACACACACACACCACCACCAACCACCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACACACACACACACACACACACACACACCACCACCAACCACCACC  300

seq1  ACCACCACCAAACAAACCAAAAAAAAAAAAAAAAAAAAAAAAGAAACCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCACCAAACAAACCAAAAAAAAAAAAAAAAAAAAAAAAGAAACCCT  350

seq1  GAAATTAGTCAAGGCTCTAGTTCTGTAGAAACAGAGTGGCCTTTTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAGTCAAGGCTCTAGTTCTGTAGAAACAGAGTGGCCTTTTCTTTC  400

seq1  TCCTTGCTTTGGACCAGAGCCAGAAGTAAATCTGCTGGGAGTTCTGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCTTTGGACCAGAGCCAGAAGTAAATCTGCTGGGAGTTCTGAGAA  450

seq1  CTTGTAACTGGCATGCTGGGTGTGGTGAGTTACTTGTGGTCCTGTGAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAACTGGCATGCTGGGTGTGGTGAGTTACTTGTGGTCCTGTGAGTA  500

seq1  GGGAGGGAATCTGAGGCCAAGCAGGAAGAGTGTCCTCATTCACGTATTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGAATCTGAGGCCAAGCAGGAAGAGTGTCCTCATTCACGTATTAG  550

seq1  CAGCTCCACTGGAGAAGGCACAGGTGCTAGCATGTGGCCACTGGCTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCACTGGAGAAGGCACAGGTGCTAGCATGTGGCCACTGGCTCTGA  600

seq1  CCCCTGGCTCTGTTTGGCGATATCACCAGTGTAGAGCATGCAGCTGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGCTCTGTTTGGCGATATCACCAGTGTAGAGCATGCAGCTGGTTT  650

seq1  ATTCGTCATTCTTTAATCTATTCAGTTACGGTGGCTAGCCTTCTCACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTCATTCTTTAATCTATTCAGTTACGGTGGCTAGCCTTCTCACAAA  700

seq1  AAGTGGATGATGCTACAGAAACATACCTAACAAGATAACAGTAAACAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGATGATGCTACAGAAACATACCTAACAAGATAACAGTAAACAGAT  750

seq1  GAGAAAAACAGGATGAGGGAGAAAAATTTGTATCATTTCCTTCACCACGG  800
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAGAAAAACAGGATGAGGGAGAAAAATTTGTATCA-TTCCTTCACCACGG  799

seq1  CCTTTCCCAACACTGAGTGATCCACATTCCCTCACAGCAGCTTAGCAAGG  850
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTT-CCAACACTGAGTGATCCACATTCCCTCACAGCAGCTTAGCAAGG  848

seq1  GAGGGGAGTTAACTGATTCTACTTGGTCATCAAGATAACAATTCTATATA  900
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  GAGGGGAG-TAACTGATTCTACTTGGTCATCAAGAT-ACAATTCTATATA  896

seq1  ATCTGGGCTCTACACTCAACACCCCAATTTTCTTGGTGATATATACAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGCTCTACACTCAACACCCCAATTTTCTTGGTGATATATACAGAG  946

seq1  GCATTTTATTTCTTAATTAAAAACTATTTACTGATATTTGCATGTATGTA  1000
      |||||||||||||||||| ||||||| ||||||| | |||||||||||||
seq2  GCATTTTATTTCTTAATT-AAAACTA-TTACTGA-AATTGCATGTATGTA  993

seq1  TGCATAGCCAGCAAATTGTATATAATGTGATTCTTAATCTTATGCATGTA  1050
      |||||||||||||||||| ||  ||||||| |||  | |||||||||| |
seq2  TGCATAGCCAGCAAATTG-ATTAAATGTGA-TCT--ACCTTATGCATGAA  1039

seq1  TGT-GCTCAATGTCTGT-GGGTGTACATGTGTACAAACCTGCACATGTGT  1098
      ||| || ||||  |||| |||||||||  |||||||||||   |||||||
seq2  TGTGGCCCAATTCCTGTGGGGTGTACA-ATGTACAAACCTTGCCATGTGT  1088

seq1  GTAAGCTGGAGGACA-ACGTTGAGTGTCCTTCTTAGGAACAGCA-TCCAC  1146
      ||| ||| ||||||| ||||   |  |||||| |||  |||||| |||| 
seq2  GTAGGCT-GAGGACACACGT---GATTCCTTC-TAG--ACAGCACTCCA-  1130

seq1  CTCCTTTGAGATGGGGCCTTTCAGTTAGGCCAGACCGGATAGCCAGCAAG  1196
      |||  |||| ||||   | ||||||||||||||||| ||||||| | |||
seq2  CTCTCTTGA-ATGG---CCTTCAGTTAGGCCAGACC-GATAGCC-GAAAG  1174

seq1  TCCTAAG  1203
      |||||||
seq2  TCCTAAG  1181