BAC Information

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BAC

Clone NameB6Ng01-135N17
Chromosome2 (Build37)
Map Location 80,979,345 - 81,131,669
singlet/doubletdoublet
Overlap genenone
Upstream genePrdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
Downstream geneLOC100040704, Zfp804a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135N17.bB6Ng01-135N17.g
ACCDH935791DH935792
length1,0961,064
definitionDH935791|Mus musculus domesticus DNA, BAC clone: B6Ng01-135N17, 5' end.DH935792|Mus musculus domesticus DNA, BAC clone: B6Ng01-135N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,979,345 - 80,980,444)(81,130,594 - 81,131,669)
sequence
gaattcattttggttgttagaaaactgtagacatattgttcaatcataat
tctcatctcaactttaaatgagttgtcattctggtagaggaaaagaactt
tgtgttttgttggctatgattttcactatcagtattaagtgttcaaaagt
agcttttgaagagtcagaaaatcaactcacagataggaaagtgtctctca
taatcatcatttaatgtattgatgactacaccaccatgctgaagtaggct
tgaattatctcagcttgcacatccagtacattaacaaatgttagaaatct
accactggagtggaaactgctgttttcccctctatcatagcaaaacctgt
tgttattttcttctgagagcatcctttcatctggatccattcagtagtct
agtgcttcttcccagcaagacaatcataagcattggtggcattcgatttt
tcttcttccatgtgatgatacattcttttggtgatgtctcattgtcctca
gactcctacacaaagtactgtagtctggataggtactgaatagaggagtt
tacatcccacagttatgacagatgaaagttaaagcccaaagtactgacac
aaatgctacttgggcacatatatttcagtgggggaacacaatattctatc
tataatatttgtgaaataaatttactagcacagctgagattttctctgat
taggagagcctgcttgctaggacttgtttacagctcagacctagccattt
cctatgtgtttctcatcaccataacataacatgcaacaaccaaatttgtt
ccctagcaaactatttcctattgttttggctaactttaattgccagtcta
ttcaaagatgtgctttaaaatagataaatcaaataaagttgtcttaaagt
aaaatttcaaacacatataaaggcaaagcatctatcaatatttagatttc
gattaaagatgacattcatttctagccgtatgcagaaacttgagaatatc
tttatagctataaagatatgctagtgaatagaacttggaaaggtggtgtg
tacaccatctcttaggacttaccttctattgatcttgtgtttcctt
gaattcatagaatgtagcagaagcaggaaataggagttctgagagatcag
ggaatcgaggtatcagacagcaatgagaatcctctggcaatagtgtggat
aagacacagagttgacaaaagtggaactgtgtgttaactagtccacgagg
tgggaaaaccagtggtgctctgggagaagaatggcatctgcgtcttatat
ggaagccttcaccagttccaaagcagtccaccctggaccaatggctgcag
gttttgttgggtcccttccctgtatctttgtgtgcgatggtagttttagg
aggtggttgactggcagctggaatgatgattaaaggagtgagtaaagaca
gacagtgcctttcaaagaggtcctcacctgcactgtcaaacttgcccatt
ctgagagcaatggccatcctatccacagttctgtagctcgtgcatttccc
gtatttgccagtttgaataatgtgaaaagacatatattttcagccctttt
ggggggaaacagtcatatccagcgtgacaacaaacaatccagtgtagcca
tcaacacaatggaatatgtaataaaggggttcttcctaaaaaaaaagaaa
agaaaaaaatgctggtcctgatggatttgctggagattcgtgttaaatat
tttaagatttgcaagcaacatcacaagaactcagaagacagaaagaaagg
gtgtgtctcaactcattttgtaaggcttaaaaagatgaacactcttgtcc
ttgtaacgtttcgccagcaaaacacactcggacaaccagatccttctacg
gcaaagcttttattgcttacttctcagaagaccccgaacccggaaaatgg
tgctgcttaaatacccctctgtgtgacatgtcagctcctgattactgctc
actatcagcccagatgatgccacgggacaggtagggcacagaatggaaaa
taccctagcacatgccgcagactatttgttaacagtagacaccggattat
catcgccatcttgtaatgcgattgcaggcgctcctccaaacacaatcttt
ttaagaaaacaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_80979345_80980444
seq2: B6Ng01-135N17.b_48_1143

seq1  GAATTCATTTTGGTTGTTAGAAAACTGTAGACATATTGTTCAATCATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGGTTGTTAGAAAACTGTAGACATATTGTTCAATCATAAT  50

seq1  TCTCATCTCAACTTTAAATGAGTTGTCATTCTGGTAGAGGAAAAGAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCTCAACTTTAAATGAGTTGTCATTCTGGTAGAGGAAAAGAACTT  100

seq1  TGTGTTTTGTTGGCTATGATTTTCACTATCAGTATTAAGTGTTCAAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTGTTGGCTATGATTTTCACTATCAGTATTAAGTGTTCAAAAGT  150

seq1  AGCTTTTGAAGAGTCAGAAAATCAACTCACAGATAGGAAAGTGTCTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTGAAGAGTCAGAAAATCAACTCACAGATAGGAAAGTGTCTCTCA  200

seq1  TAATCATCATTTAATGTATTGATGACTACACCACCATGCTGAAGTAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATCATTTAATGTATTGATGACTACACCACCATGCTGAAGTAGGCT  250

seq1  TGAATTATCTCAGCTTGCACATCCAGTACATTAACAAATGTTAGAAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATCTCAGCTTGCACATCCAGTACATTAACAAATGTTAGAAATCT  300

seq1  ACCACTGGAGTGGAAACTGCTGTTTTCCCCTCTATCATAGCAAAACCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGGAGTGGAAACTGCTGTTTTCCCCTCTATCATAGCAAAACCTGT  350

seq1  TGTTATTTTCTTCTGAGAGCATCCTTTCATCTGGATCCATTCAGTAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTTCTTCTGAGAGCATCCTTTCATCTGGATCCATTCAGTAGTCT  400

seq1  AGTGCTTCTTCCCAGCAAGACAATCATAAGCATTGGTGGCATTCGATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTCTTCCCAGCAAGACAATCATAAGCATTGGTGGCATTCGATTTT  450

seq1  TCTTCTTCCATGTGATGATACATTCTTTTGGTGATGTCTCATTGTCCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCCATGTGATGATACATTCTTTTGGTGATGTCTCATTGTCCTCA  500

seq1  GACTCCTACACAAAGTACTGTAGTCTGGATAGGTACTGAATAGAGGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTACACAAAGTACTGTAGTCTGGATAGGTACTGAATAGAGGAGTT  550

seq1  TACATCCCACAGTTATGACAGATGAAAGTTAAAGCCCAAAGTACTGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCCACAGTTATGACAGATGAAAGTTAAAGCCCAAAGTACTGACAC  600

seq1  AAATGCTACTTGGGCACATATATTTCAGTGGGGGAACACAATATTCTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTACTTGGGCACATATATTTCAGTGGGGGAACACAATATTCTATC  650

seq1  TATAATATTTGTGAAATAAATTTACTAGCACAGCTGAGATTTTCTCTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATTTGTGAAATAAATTTACTAGCACAGCTGAGATTTTCTCTGAT  700

seq1  TAGGAGAGCCTGCTTGCTAGGACTTGTTTACAGCTCAGACCTAGCCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAGCCTGCTTGCTAGGACTTGTTTACAGCTCAGACCTAGCCATTT  750

seq1  CCTATGTGTTTCTCATCACCATAACATAACATGCAACAACCAAATTTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTGTTTCTCATCACCATAACATAACATGCAACAACCAAATTTGTT  800

seq1  CCCTAGCAAACTATTTCCTATTGTTTTGGCTAACTTTAATTGCCAGTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGCAAACTATTTCCTATTGTTTTGGCTAACTTTAATTGCCAGTCTA  850

seq1  TTCAAAGATGTGCTTTAAAATAGATAAATCAAATAAAGTTGTCTTAAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGATGTGCTTTAAAATAGATAAATCAAATAAAGTTGTCTTAAAGT  900

seq1  AAAATTTCAAACACATATAAAGGCAAAGCATCTATCAATATTTAGATTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCAAACACATATAAAGGCAAAGCATCTATCAATATTTAGATTTC  950

seq1  GATTAAAGATGACATTCAATTTCTAGCCGTATGCCAGAAAACTTGAGAAT  1000
      ||||||||||||||||| ||||||||||||||| ||| ||||||||||||
seq2  GATTAAAGATGACATTC-ATTTCTAGCCGTATG-CAG-AAACTTGAGAAT  997

seq1  ATCTTTATAAGCTATAAAGATATGCTTAGTGAATAGAACTTGG-AAGGT-  1048
      |||||||| |||||||||||||||| ||||||||||||||||| ||||| 
seq2  ATCTTTAT-AGCTATAAAGATATGC-TAGTGAATAGAACTTGGAAAGGTG  1045

seq1  GTGTGTACACCATCTCTTA-GACTTACC-TCTATTTGAATTCTTGTGTTT  1096
      ||||||||||||||||||| |||||||| |||| ||||  ||||||||||
seq2  GTGTGTACACCATCTCTTAGGACTTACCTTCTA-TTGA--TCTTGTGTTT  1092

seq1  CCTT  1100
      ||||
seq2  CCTT  1096

seq1: chr2_81130594_81131669
seq2: B6Ng01-135N17.g_69_1132 (reverse)

seq1  CCTTGTTTTTCTTATAATGATTGTGTTTTGTGAGGAGCCGCCCTTGCAAT  50
      ||||| |||||||| || ||||||||||   |||||| ||||  ||||||
seq2  CCTTG-TTTTCTTAAAAAGATTGTGTTT--GGAGGAG-CGCC--TGCAAT  44

seq1  CGCCATTACAAGATGGCGATGAT-ATCCGGTGTTCTAACTGGTAAACAAA  99
      || |||||||||||||||||||| |||||||| ||| ||| || ||||||
seq2  CG-CATTACAAGATGGCGATGATAATCCGGTG-TCT-ACT-GTTAACAAA  90

seq1  TAGTCTGC-GCATGTGCTAGGGTATTTTTCCATTCCTTGTGCCCTACCTG  148
      |||||||| ||||||||||||||| ||||||||||  |||||||||||||
seq2  TAGTCTGCGGCATGTGCTAGGGTA-TTTTCCATTC--TGTGCCCTACCTG  137

seq1  TCCCGTGGCATCATCTGGGCTGATAGTGAGCAGTTAATCAGGAGCTGACA  198
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCCGTGGCATCATCTGGGCTGATAGTGAGCAG-TAATCAGGAGCTGACA  186

seq1  TGTCACACAGAGGGGTATTTAAGCAGCACCATTTTCCGGGTTCGGGGTCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACACAGAGGGGTATTTAAGCAGCACCATTTTCCGGGTTCGGGGTCT  236

seq1  TCCTGAGAAGTAAGCAAT-AAAGCTTTGCCGTAGAAGGATCTGGTTGTCC  297
      | |||||||||||||||| |||||||||||||||||||||||||||||||
seq2  T-CTGAGAAGTAAGCAATAAAAGCTTTGCCGTAGAAGGATCTGGTTGTCC  285

seq1  GAGTGTGTTTTGCTGGCGAAACGTTACAAGGACAAGAGTGTTCATCTTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGTTTTGCTGGCGAAACGTTACAAGGACAAGAGTGTTCATCTTTT  335

seq1  TAAGCCTTACAAAATGAGTTGAGACACACCCTTTCTTTCTGTCTTCTGAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTTACAAAATGAGTTGAGACACACCCTTTCTTTCTGTCTTCTGAG  385

seq1  TTCTTGTGATGTTGCTTGCAAATCTTAAAATATTTAACACGAATCTCCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGATGTTGCTTGCAAATCTTAAAATATTTAACACGAATCTCCAG  435

seq1  CAAATCCATCAGGACCAGCATTTTTTTCTTTTCTTTTTTTTTAGGAAGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCATCAGGACCAGCATTTTTTTCTTTTCTTTTTTTTTAGGAAGAA  485

seq1  CCCCTTTATTACATATTCCATTGTGTTGATGGCTACACTGGATTGTTTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTATTACATATTCCATTGTGTTGATGGCTACACTGGATTGTTTGT  535

seq1  TGTCACGCTGGATATGACTGTTTCCCCCCAAAAGGGCTGAAAATATATGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACGCTGGATATGACTGTTTCCCCCCAAAAGGGCTGAAAATATATGT  585

seq1  CTTTTCACATTATTCAAACTGGCAAATACGGGAAATGCACGAGCTACAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCACATTATTCAAACTGGCAAATACGGGAAATGCACGAGCTACAGA  635

seq1  ACTGTGGATAGGATGGCCATTGCTCTCAGAATGGGCAAGTTTGACAGTGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGATAGGATGGCCATTGCTCTCAGAATGGGCAAGTTTGACAGTGC  685

seq1  AGGTGAGGACCTCTTTGAAAGGCACTGTCTGTCTTTACTCACTCCTTTAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGGACCTCTTTGAAAGGCACTGTCTGTCTTTACTCACTCCTTTAA  735

seq1  TCATCATTCCAGCTGCCAGTCAACCACCTCCTAAAACTACCATCGCACAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTCCAGCTGCCAGTCAACCACCTCCTAAAACTACCATCGCACAC  785

seq1  AAAGATACAGGGAAGGGACCCAACAAAACCTGCAGCCATTGGTCCAGGGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATACAGGGAAGGGACCCAACAAAACCTGCAGCCATTGGTCCAGGGT  835

seq1  GGACTGCTTTGGAACTGGTGAAGGCTTCCATATAAGACGCAGATGCCATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCTTTGGAACTGGTGAAGGCTTCCATATAAGACGCAGATGCCATT  885

seq1  CTTCTCCCAGAGCACCACTGGTTTTCCCACCTCGTGGACTAGTTAACACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCAGAGCACCACTGGTTTTCCCACCTCGTGGACTAGTTAACACA  935

seq1  CAGTTCCACTTTTGTCAACTCTGTGTCTTATCCACACTATTGCCAGAGGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCACTTTTGTCAACTCTGTGTCTTATCCACACTATTGCCAGAGGA  985

seq1  TTCTCATTGCTGTCTGATACCTCGATTCCCTGATCTCTCAGAACTCCTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTGCTGTCTGATACCTCGATTCCCTGATCTCTCAGAACTCCTAT  1035

seq1  TTCCTGCTTCTGCTACATTCTATGAATTC  1076
      |||||||||||||||||||||||||||||
seq2  TTCCTGCTTCTGCTACATTCTATGAATTC  1064