BAC Information

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BAC

Clone NameB6Ng01-136B18
Chromosome2 (Build37)
Map Location 34,217,853 - 34,418,320
singlet/doubletdoublet
Overlap genePbx3, LOC665948, Mapkap1
Upstream geneRalgps1, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931
Downstream geneLOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136B18.bB6Ng01-136B18.g
ACCDH935972DH935973
length1,1361,134
definitionDH935972|Mus musculus domesticus DNA, BAC clone: B6Ng01-136B18, 5' end.DH935973|Mus musculus domesticus DNA, BAC clone: B6Ng01-136B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,417,175 - 34,418,320)(34,217,853 - 34,218,999)
sequence
gaattcaattcccagcaaccacatagtggctcacagccatctgtaatgat
atctgatgccttcttctggtgtgtctgaagacagcaacagtgtactcaca
tatataaaataaattaaaagatgtctgagtcaaaatgaactggaggcaca
tatgattgcctcattcttgatgtgaagcaggctaccttccttcctctctg
gacctctttcctaatgtgcatggtgtgtccaaaatgacatggataaaacc
cacaggaagcagcggctggcagatctctgtgagtttgaggccagcctggt
ctatacagtgagttctaggatacctgggttacaaagtgaatccatgtctc
aaacaaacaaacaaacaaacaaacaaacagcccacccactctcctggctt
aggaatcaccagctccagaggaggcactgctgccaaggcacttatgcaca
atcatcacagcatactaatcagttacaattaggaggcatgtgtagaactc
tatgatagttcaaaaagtcaaagaaataaaaaccctgaaagttacagggt
gaatctcatgctctgggtttgtaagggaaaggtagcagccatcagttagt
tgttcatgcttttactcagacactgtggacattagagacacgtggtttcg
tgttctagtatccaaaaattctactacccaccccatgcacctaagtgtta
tggcagatctaagaagatagcagaacattttacacatttattcataattt
ttttgtcaacctaagtagcaatggtgttctcagagaacacttatatatat
atatacacacacacacacacacatacacacatacatacacacacagggaa
gctgttttctaaaatgtgaactgtagttatgttacaataatgagattatg
tatgctttatttttcctttgtgctttcctgtatttttcaaatttctatat
aataaagactttttttataatctaaatgtgcatatacctaaaatgtttcc
aatttcttactatgtcttttttttttttttttataccacaaagtgtgaac
ttggcagagccttccaaaataatatttaaatggatcgatctgttattaag
tcatcctaggtcactggtacctggcatggttactct
gaattccaactaccttcatgggtaggttttttttttttttctttttaagg
gagaggtgaggaaagcaagaaaaacaaagttataagactgtcaaagccac
ttcctcctcatttgagggtacctgcataataaaataagatgtacatatca
agctgccatttccacttttttttaaataaagcgactgactttttccatca
aatgccacattcctataagtcttcctaaaagctttatctgcaaggtttag
ttacgtgaaagcttgtagaaatcttttgtttaaataataataatattcaa
tttcaaagctcttttttccctgttttaaggaaaaaaaacttcgttattaa
aaggaaattttgtaagtaatcaaaagactagtgaggagtctgaaaagaga
caaaaatctgaagtaaccaggtattttatacaaaaaaaaaaaaagtagct
aatgtgttacctactaaggcccccccactcccaagagaggctctcacctc
tgtgtgcacatttctaactctcatcccatgcccagccatgcccaaggaga
tgcaagcctccatagtgtacatgcatggcaggtgtgaggactaaagaatc
catatggctctgggatggtatgacttcctggtctagacatgatggagttc
agacactagaaccagggcccagtacaaaatacctctcccaaacactctat
ctaaccaaacccagagatttgcagttagcaatttgcacctctttcaatgc
tttatgcaggtagaagctctgagttagaagaaaccttaactttttcttaa
gccccagagaaattctgtccttcacttctccagtccctttagtcaagcat
ccatttcctcacaaataatagaaaatcacaaagaagctttagggagctaa
attcaaataccttacattagcacaactcaggaaaccaggacgagtaagga
atttcattttcaacatgaaaatcaaatcagtatttacatggtcgatacat
gatataatataattccacaggtggtgtaagggccaaggtttacctactat
taaatctatggttcacttttctgaaatcgagtcaaatctatgctcattaa
ataggttcatggaggccaattcacaacttctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_34417175_34418320
seq2: B6Ng01-136B18.b_50_1185 (reverse)

seq1  AGAGTACCCATGCCAGGGTACACAGTGACTTAGGATGAAACTTAATAACA  50
      |||||| |||||||| ||||| ||||||| |||||||  |||||||||||
seq2  AGAGTAACCATGCCA-GGTAC-CAGTGACCTAGGATG--ACTTAATAACA  46

seq1  GATCTGATTCAATTAAATTATTATATGTGAAAGGCTCTGCCAAGTTCCAC  100
      |||| ||| || ||||| |||||| | || |||||||||||||||| |||
seq2  GATC-GATCCATTTAAA-TATTAT-TTTGGAAGGCTCTGCCAAGTT-CAC  92

seq1  ACTTTGTGGTATAAAAAAAAAAAAAAAAAGACATAGTAAGAAATTGGAAA  150
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTGGTAT-AAAAAAAAAAAAAAAAGACATAGTAAGAAATTGGAAA  141

seq1  CATTTTAGGTATATGCAACATTTTAGATTATAAAAAAAGTCTTTATTATA  200
      |||||||||||||||| ||| |||||||||||||||||||||||||||||
seq2  CATTTTAGGTATATGC-ACA-TTTAGATTATAAAAAAAGTCTTTATTATA  189

seq1  TAGAAATTTGAAAAATACAGGAAAGCACAAAGGAAAAATAAAGCATACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTTGAAAAATACAGGAAAGCACAAAGGAAAAATAAAGCATACAT  239

seq1  AATCTCATTATTGTAACATAACTACAGTTCACATTTTAG-AAACAGCTTC  299
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATCTCATTATTGTAACATAACTACAGTTCACATTTTAGAAAACAGCTTC  289

seq1  CCTGTGTGTGTATGTATGTGTGTATGTGTGTGTGTGTGTGTGTATATATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGTGTATGTATGTGTGTATGTGTGTGTGTGTGTGTGTATATATA  339

seq1  TATATAAGTGTTCTCTGAGAACACCATTGCTACTTAGGTTGACAAAAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAGTGTTCTCTGAGAACACCATTGCTACTTAGGTTGACAAAAAAA  389

seq1  TTATGAATAAATGTGTAAAATGTTCTGCTATCTTCTTAGATCTGCCATAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAATAAATGTGTAAAATGTTCTGCTATCTTCTTAGATCTGCCATAA  439

seq1  CACTTAGGTGCATGGGGTGGGTAGTAGAATTTTTGGATACTAGAACACGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGGTGCATGGGGTGGGTAGTAGAATTTTTGGATACTAGAACACGA  489

seq1  AACCACGTGTCTCTAATGTCCACAGTGTCTGAGTAAAAGCATGAACAACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACGTGTCTCTAATGTCCACAGTGTCTGAGTAAAAGCATGAACAACT  539

seq1  AACTGATGGCTGCTACCTTTCCCTTACAAACCCAGAGCATGAGATTCACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATGGCTGCTACCTTTCCCTTACAAACCCAGAGCATGAGATTCACC  589

seq1  CTGTAACTTTCAGGGTTTTTATTTCTTTGACTTTTTGAACTATCATAGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACTTTCAGGGTTTTTATTTCTTTGACTTTTTGAACTATCATAGAG  639

seq1  TTCTACACATGCCTCCTAATTGTAACTGATTAGTATGCTGTGATGATTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACACATGCCTCCTAATTGTAACTGATTAGTATGCTGTGATGATTGT  689

seq1  GCATAAGTGCCTTGGCAGCAGTGCCTCCTCTGGAGCTGGTGATTCCTAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGTGCCTTGGCAGCAGTGCCTCCTCTGGAGCTGGTGATTCCTAAG  739

seq1  CCAGGAGAGTGGGTGGGCTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGAGTGGGTGGGCTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGAG  789

seq1  ACATGGATTCACTTTGTAACCCAGGTATCCTAGAACTCACTGTATAGACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGATTCACTTTGTAACCCAGGTATCCTAGAACTCACTGTATAGACC  839

seq1  AGGCTGGCCTCAAACTCACAGAGATCTGCCAGCCGCTGCTTCCTGTGGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTCAAACTCACAGAGATCTGCCAGCCGCTGCTTCCTGTGGGT  889

seq1  TTTATCCATGTCATTTTGGACACACCATGCACATTAGGAAAGAGGTCCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCATGTCATTTTGGACACACCATGCACATTAGGAAAGAGGTCCAG  939

seq1  AGAGGAAGGAAGGTAGCCTGCTTCACATCAAGAATGAGGCAATCATATGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGGAAGGTAGCCTGCTTCACATCAAGAATGAGGCAATCATATGT  989

seq1  GCCTCCAGTTCATTTTGACTCAGACATCTTTTAATTTATTTTATATATGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAGTTCATTTTGACTCAGACATCTTTTAATTTATTTTATATATGT  1039

seq1  GAGTACACTGTTGCTGTCTTCAGACACACCAGAAGAAGGCATCAGATATC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACACTGTTGCTGTCTTCAGACACACCAGAAGAAGGCATCAGATATC  1089

seq1  ATTACAGATGGCTGTGAGCCACTATGTGGTTGCTGGGAATTGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGATGGCTGTGAGCCACTATGTGGTTGCTGGGAATTGAATTC  1136

seq1: chr2_34217853_34218999
seq2: B6Ng01-136B18.g_68_1201

seq1  GAATTCCAACTACCTTCATGGGTAGGTTTTTTTTTTTTTTCTTTTTAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTACCTTCATGGGTAGGTTTTTTTTTTTTTTCTTTTTAAGG  50

seq1  GAGAGGTGAGGAAAGCAAGAAAAACAAAGTTATAAGACTGTCAAAGCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGAGGAAAGCAAGAAAAACAAAGTTATAAGACTGTCAAAGCCAC  100

seq1  TTCCTCCTCATTTGAGGGTACCTGCATAATAAAATAAGATGTACATATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTCATTTGAGGGTACCTGCATAATAAAATAAGATGTACATATCA  150

seq1  AGCTGCCATTTCCACTTTTTTTTAAATAAAGCGACTGACTTTTTCCATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCATTTCCACTTTTTTTTAAATAAAGCGACTGACTTTTTCCATCA  200

seq1  AATGCCACATTCCTATAAGTCTTCCTAAAAGCTTTATCTGCAAGGTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCACATTCCTATAAGTCTTCCTAAAAGCTTTATCTGCAAGGTTTAG  250

seq1  TTACGTGAAAGCTTGTAGAAATCTTTTGTTTAAATAATAATAATATTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGTGAAAGCTTGTAGAAATCTTTTGTTTAAATAATAATAATATTCAA  300

seq1  TTTCAAAGCTCTTTTTTCCCTGTTTTAAGGAAAAAAAACTTCGTTATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGCTCTTTTTTCCCTGTTTTAAGGAAAAAAAACTTCGTTATTAA  350

seq1  AAGGAAATTTTGTAAGTAATCAAAAGACTAGTGAGGAGTCTGAAAAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATTTTGTAAGTAATCAAAAGACTAGTGAGGAGTCTGAAAAGAGA  400

seq1  CAAAAATCTGAAGTAACCAGGTATTTTATACAAAAAAAAAAAAAGTAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATCTGAAGTAACCAGGTATTTTATACAAAAAAAAAAAAAGTAGCT  450

seq1  AATGTGTTACCTACTAAGGCCCCCCCACTCCCAAGAGAGGCTCTCACCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTACCTACTAAGGCCCCCCCACTCCCAAGAGAGGCTCTCACCTC  500

seq1  TGTGTGCACATTTCTAACTCTCATCCCATGCCCAGCCATGCCCAAGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCACATTTCTAACTCTCATCCCATGCCCAGCCATGCCCAAGGAGA  550

seq1  TGCAAGCCTCCATAGTGTACATGCATGGCAGGTGTGAGGACTAAAGAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCCTCCATAGTGTACATGCATGGCAGGTGTGAGGACTAAAGAATC  600

seq1  CATATGGCTCTGGGATGGTATGACTTCCTGGTCTAGACATGATGGAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGCTCTGGGATGGTATGACTTCCTGGTCTAGACATGATGGAGTTC  650

seq1  AGACACTAGAACCAGGGCCCAGTAC-AAATACCTCTCCCAAACACTCTAT  699
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGACACTAGAACCAGGGCCCAGTACAAAATACCTCTCCCAAACACTCTAT  700

seq1  CTAACCAAACCCAGAGATTTGCAGTTAGCAATTTGCACCTCTTTCAATGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCAAACCCAGAGATTTGCAGTTAGCAATTTGCACCTCTTTCAATGC  750

seq1  TTTATGCAGGTAGAAGCTCTGAGTTAGAAGAAACCTTAACTTTTTCTTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCAGGTAGAAGCTCTGAGTTAGAAGAAACCTTAACTTTTTCTTAA  800

seq1  G-CCCAGAGAAATTCTGTCCTTCACTTCTCCAGTCCCTTTAGTCAAGCAT  848
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGAGAAATTCTGTCCTTCACTTCTCCAGTCCCTTTAGTCAAGCAT  850

seq1  CCATTTCCTCACAAAATAATAGAAAATCACAAAGAAGCTTTAAGGAGCTA  898
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  CCATTTCCTCAC-AAATAATAGAAAATCACAAAGAAGCTTTAGGGAGCTA  899

seq1  AATTCAAATACCTTACATTAGCCACAACTCAGGAAACCAGAACGAAGTAA  948
      ||||||||||||||||||||| |||||||||||||||||| ||| |||||
seq2  AATTCAAATACCTTACATTAG-CACAACTCAGGAAACCAGGACG-AGTAA  947

seq1  GAAATTTCATTTTCAACATGAAAATCAAATCCAGTAATCTTACAT-GTCG  997
      | |||||||||||||||||||||||||||| |||||   |||||| ||||
seq2  GGAATTTCATTTTCAACATGAAAATCAAAT-CAGTA--TTTACATGGTCG  994

seq1  ATACATGATATAATATAAATTCCACAGGTTGTGTAAAGGGCAAAGTTTAA  1047
      |||||||||||||||| |||||||||||| |||||| || ||| ||||| 
seq2  ATACATGATATAATAT-AATTCCACAGGTGGTGTAAGGGCCAAGGTTTAC  1043

seq1  CTACTAATTAATTCTATTGGTTCAACTTTCTTGAATTCGAGTCAAAATCT  1097
      ||||| ||||| |||| |||||| |||||  |||| ||||||| ||||||
seq2  CTACT-ATTAAATCTA-TGGTTC-ACTTTTCTGAAATCGAGTC-AAATCT  1089

seq1  TAATGCTCATTTAATATAGTTTCATGAGGCCCAATTCAACAACTTCTTTT  1147
        |||||||||  | |||| ||||||  | ||||||| ||||||||||||
seq2  --ATGCTCATT--AAATAGGTTCATGGAGGCCAATTC-ACAACTTCTTTT  1134