BAC Information

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BAC

Clone NameB6Ng01-138H07
Chromosome2 (Build37)
Map Location 20,357,787 - 20,558,649
singlet/doubletdoublet
Overlap geneEtl4
Upstream genePtf1a, LOC100041534, 4921504E06Rik, LOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360, LOC667609
Downstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138H07.bB6Ng01-138H07.g
ACCDH937713DH937714
length2361,081
definitionDH937713|Mus musculus domesticus DNA, BAC clone: B6Ng01-138H07, 5' end.DH937714|Mus musculus domesticus DNA, BAC clone: B6Ng01-138H07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,558,414 - 20,558,649)(20,357,787 - 20,358,888)
sequence
tcagagttctcagagttcttgaagaagaggagaacttatcctaattacag
ggaatcacagcggaatacaataacaattcataacaattcaactttaaacg
tgctttgctaattgcttgcaaatatcagagcaaaaggttgaaggcataga
ctctaagtaggcaagcagattctggcttggctgtgaaagcctaggaatag
ctaggagaggagtagacagggtggggaggggggaga
gaattcagtcctaattgtctgtgcattttcttctcagctgacgtcatgac
attaaaaaacatccctcttcttgtatagtcttaaaaacgaagggttggag
ttgatttcagtgagaagggtgttgttttggtttaaattactgtgaactaa
gtaacacactcaatacacaggtatccaaagcataaatgagaaggcattta
aaaactaaaatgtaacacattattacacagtttttaaaagtagaaagaaa
ttggaaagaaacctgagtgaaccatcagcctcgtctccaccccagagact
gcctgtggcttccatcttcactgctgctttgcttggtttgaattttgctt
tttcatcttatttttctgagacagggtcttactgtgtagaccaagctgaa
cttcaatttttgatcttcctggcttccccctccacatactgagattatag
acttgtatgccccggggttggtttttctaatatgcttgctgttatatgta
taatctactactttattcaaatgaagtgttttcatgttattataaggtgt
ttgtagacatgatgttagtggctgcatagatttccttttaatggatgtct
cctaattactcgctagtgtcccacagttttaggtttatatctcttctatt
tacataaaacacaccgttcatctatatatctccctctccccacatttaga
attcattttatgaatatgttcctggaaatggtcatgaattaaaatgagat
tacatttctaagaaacttctcacatatgtgcagtgtctaagctgttctga
actgctgtagtttttataccataagccccagtgcataagattgtgtgctg
atttgtgattttaagctaatatgtgatatctggtctgatttgaatctaca
ctgttataaagttaaagttttttctagttattcatgaggatagaaatgtt
ggttatggcttcatctgttagttgtacagagggaaatgtttctaaattat
aatggctactttgtacacaatcttgggccctttgaaacttttttcagatt
ttttgattcacttcatatactctactctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_20558414_20558649
seq2: B6Ng01-138H07.b_51_286 (reverse)

seq1  TCTCCCCCCTCCCCACCCTGTCTACTCCTCTCCTAGCTATTCCTAGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCCCTCCCCACCCTGTCTACTCCTCTCCTAGCTATTCCTAGGCTT  50

seq1  TCACAGCCAAGCCAGAATCTGCTTGCCTACTTAGAGTCTATGCCTTCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCCAAGCCAGAATCTGCTTGCCTACTTAGAGTCTATGCCTTCAAC  100

seq1  CTTTTGCTCTGATATTTGCAAGCAATTAGCAAAGCACGTTTAAAGTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTCTGATATTTGCAAGCAATTAGCAAAGCACGTTTAAAGTTGAA  150

seq1  TTGTTATGAATTGTTATTGTATTCCGCTGTGATTCCCTGTAATTAGGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATGAATTGTTATTGTATTCCGCTGTGATTCCCTGTAATTAGGATA  200

seq1  AGTTCTCCTCTTCTTCAAGAACTCTGAGAACTCTGA  236
      ||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCCTCTTCTTCAAGAACTCTGAGAACTCTGA  236

seq1: chr2_20357787_20358888
seq2: B6Ng01-138H07.g_68_1148

seq1  GAATTCAGTCCTAATTGTCTGTGCATTTTCTTCTCAGCTGACGTCATGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCTAATTGTCTGTGCATTTTCTTCTCAGCTGACGTCATGAC  50

seq1  ATTAAAAAACATCCCTCTTCTTGTATAGTCTTAAAAACGAAGGGTTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAACATCCCTCTTCTTGTATAGTCTTAAAAACGAAGGGTTGGAG  100

seq1  TTGATTTCAGTGAGAAGGGTGTTGTTTTGGTTTAAATTACTGTGAACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCAGTGAGAAGGGTGTTGTTTTGGTTTAAATTACTGTGAACTAA  150

seq1  GTAACACACTCAATACACAGGTATCCAAAGCATAAATGAGAAGGCATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACACACTCAATACACAGGTATCCAAAGCATAAATGAGAAGGCATTTA  200

seq1  AAAACTAAAATGTAACACATTATTACACAGTTTTTAAAAGTAGAAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAAAATGTAACACATTATTACACAGTTTTTAAAAGTAGAAAGAAA  250

seq1  TTGGAAAGAAACCTGAGTGAACCATCAGCCTCGTCTCCACCCCAGAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAGAAACCTGAGTGAACCATCAGCCTCGTCTCCACCCCAGAGACT  300

seq1  GCCTGTGGCTTCCATCTTCACTGCTGCTTTGCTTGGTTTGAATTTTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGGCTTCCATCTTCACTGCTGCTTTGCTTGGTTTGAATTTTGCTT  350

seq1  TTTCATCTTATTTTTCTGAGACAGGGTCTTACTGTGTAGACCAAGCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTTATTTTTCTGAGACAGGGTCTTACTGTGTAGACCAAGCTGAA  400

seq1  CTTCAATTTTTGATCTTCCTGGCTTCCCCCTCCACATACTGAGATTATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATTTTTGATCTTCCTGGCTTCCCCCTCCACATACTGAGATTATAG  450

seq1  ACTTGTATGCCCCGGGGTTGGTTTTTCTAATATGCTTGCTGTTATATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTATGCCCCGGGGTTGGTTTTTCTAATATGCTTGCTGTTATATGTA  500

seq1  TAATCTACTACTTTATTCAAATGAAGTGTTTTCATGTTATTATAAGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTACTACTTTATTCAAATGAAGTGTTTTCATGTTATTATAAGGTGT  550

seq1  TTGTAGACATGATGTTAGTGGCTGCATAGATTTCCTTTTAATGGATGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGACATGATGTTAGTGGCTGCATAGATTTCCTTTTAATGGATGTCT  600

seq1  CCTAATTACTCGCTAGTGTCCCACAGTTTTAGGTTTATATCTCTTCTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTACTCGCTAGTGTCCCACAGTTTTAGGTTTATATCTCTTCTATT  650

seq1  TACATAAAACACACCGTTCATCTATATATCTCCCTCTCCCCACATTTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAAACACACCGTTCATCTATATATCTCCCTCTCCCCACATTTAGA  700

seq1  ATTCATTTTATGAATATGTTCCTGGAAATGGTCATGAATTAAAATGAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTATGAATATGTTCCTGGAAATGGTCATGAATTAAAATGAGAT  750

seq1  TACATTTCTAAGAAACTTCTCACATATGTGCAGTGTCTAAAGCTGTTCTG  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TACATTTCTAAGAAACTTCTCACATATGTGCAGTGTCT-AAGCTGTTCTG  799

seq1  AACTGCTGTAGTTTTTATACCATAAGCCCCAGTGCATAAGATTGTGTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGTAGTTTTTATACCATAAGCCCCAGTGCATAAGATTGTGTGCT  849

seq1  GATTTGTGATTTTAAGCTAATATGTGATATTCTGGTCTGATTTGAATCTA  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GATTTGTGATTTTAAGCTAATATGTGATA-TCTGGTCTGATTTGAATCTA  898

seq1  CACTGTTAATAAAGTTAAAAGTTTTTTCCTAGTTATTCATGAGGATAGAA  950
      ||||||| |||||||| |||||||||| ||||||||||||||||||||||
seq2  CACTGTT-ATAAAGTT-AAAGTTTTTT-CTAGTTATTCATGAGGATAGAA  945

seq1  ATGTTGGTTTATGGCCTTCATCTGTTTAGTTGTACAGGAGGTAAATGTTT  1000
      ||||||| |||||| ||||||||| ||||||||||| |||| ||||||||
seq2  ATGTTGG-TTATGG-CTTCATCTG-TTAGTTGTACA-GAGGGAAATGTTT  991

seq1  TCCTAAAATTTATATGGCTACTTTGT-CACTATCAATTCTTTGGCCCTTT  1049
        ||||| | || ||||||||||||| |||     | |||| ||||||||
seq2  --CTAAATTATA-ATGGCTACTTTGTACAC-----AATCTTGGGCCCTTT  1033

seq1  GTAAACTTTTTTTCAAAGTATTTTTTGTATTCACTTCATATTCTCT-CTC  1098
      | |||| ||||||||    |||||||| ||||||||||||| |||| |||
seq2  G-AAAC-TTTTTTCA---GATTTTTTG-ATTCACTTCATATACTCTACTC  1077

seq1  TCTC  1102
      ||||
seq2  TCTC  1081