BAC Information

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BAC

Clone NameB6Ng01-138N13
Chromosome2 (Build37)
Map Location 77,124,932 - 77,296,119
singlet/doubletdoublet
Overlap geneLOC623706, LOC667906, Zfp533
Upstream genePde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik, Sestd1
Downstream geneBC003993, LOC667920, OTTMUSG00000016703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138N13.bB6Ng01-138N13.g
ACCDH937988DH937989
length1,1221,020
definitionDH937988|Mus musculus domesticus DNA, BAC clone: B6Ng01-138N13, 5' end.DH937989|Mus musculus domesticus DNA, BAC clone: B6Ng01-138N13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,294,985 - 77,296,119)(77,124,932 - 77,125,958)
sequence
gaattcacttatgcatgaggtgttggcttactgtgttcaggtgctgaccc
tcaacacagaagacagcataagcatccctcaaaaattaccacactgcagt
gcaaaatacagagtaaacactcgaattgtcttttgtttttgtttgttttt
ttaagaataagcatcccagccacttgaaactccctatgtaaattgtaatg
acctttatcagagcgctgatgctgaagacctgtactgaagaattcacata
agtgtgctgccacttgactggtaaaaagacaatgtccttcaaaatgcaat
ctctatgattttcattgtttacaaacagaatttagataggagtcatctgg
attgatctttaccttagcaaaaacctattgttgttgttttttaatggaca
taagttttaattatgacctaatttgaaatgaaatatcaaagagctaggca
agcgagaaaacagaactccccaaataaaagggctcacaatcagatcacag
ttagtactggcactttcaaataactgtgtctcttatcttgcccttatcaa
ccctaagttggtaactcggtgtgcagttggatccctaaggaaaaaagcta
agattcctgggaatcctctaaaattaataatctaccttcagaccactcaa
gtgaagtctgaagtgaagggaaatggctgagtttgttcacttgaaactgt
gggaaaccaccctgcttgttctttaagggcacaatcctgtctctgcacca
catctcagctgattattaactcaagctgtggtgcccttctgtaggtcacc
tataggccaacagtgtgctcatgtgcagtttcttaggccaagcagaaaca
taggcatcaaggctcacagatgactaataggatatatttgaaaattactt
tgaactgcactaaagatctcagcttttttttttaagaaatggattaattt
gcctccactaaaatgtacaaagtgaagatgtctgtgtaaagctggggtat
caaacagaagcagctgtgacccagattactgtctctaagattgatggatt
taattgggccaagaagataacaggctaagagtgcacatcggtccctcctg
aagccactgcttcctttaagtg
gaattctctaatggtcagaaatgactctcatgtttatctacttttttttt
ttttttttttctgagcaaaacaagggcaaaccacatttggaaacaatctc
cacccatcagcaggcttcttcccacatgtcagtctttccagctgccctgg
agaggtgcgtaaaactgtggccggcagctgaatggcagcccacaggaagt
tccaaggcttggagtaaagtctcaggaagtgctgtcaatacagaagcaaa
gaattgatttggttggttgggtaaagtggaaaatggaaaaaattgccttt
tgtattaatctaagtttccctctccccctgaatacaacattattatgtaa
caaagggcctttaagcaattgctttctcttttaagttggccattcgacaa
atacagactgtgtcaccctgggttagagccacttcttagggtgtggggtt
acttgattctgcactgtgcatcagtgtaatgaaaacacaaattaggttca
tgctttgtggacgatgtgttcaatttggggagagaaagagtgcttttctt
ttgggaacatataataggagctactgcatacatacgacttaaccatttta
ttctaaaccttaatttttttatatgaaaaacttttcagaaacaccaacaa
tatatcctaatcatcattcctaacgatgaagaaaactattttttaacaca
gggtcttattatacagcacagccttgccttgaactcgttatattttttct
gcctcagcctccctagagctggaactaaagactatggtgcccagttttaa
aattgtattttctttatctagactttctccatgtaaactacagcagcaaa
tttaagacaagggctgttgctgctacttagcttagcaaccagatgaatat
gtttggggtcttgtctaagatattgtccttgtaccttcttcagatatcta
cagatattcagattttgtgttcagtcaactgattacatttagaaatgcat
gattctgattgttattgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_77294985_77296119
seq2: B6Ng01-138N13.b_46_1167 (reverse)

seq1  CACTAAAAGGAAAAGCAGTGGCTCTCAGGAGGGACACGATGTGCACTC-T  49
      |||| |||||  ||||||||||| ||||||||||| |||||||||||| |
seq2  CACTTAAAGG--AAGCAGTGGCT-TCAGGAGGGAC-CGATGTGCACTCTT  46

seq1  AGCCTGTTAATTCTCTTTGGGCCCAATTTAAATTCCATCAAATCTTAGAG  99
      |||||||||  ||| | | |||||||||  || |||||| ||||||||||
seq2  AGCCTGTTA--TCT-TCTTGGCCCAATT--AAATCCATC-AATCTTAGAG  90

seq1  ACAGTAAATTCTTGGGTCACAGCTGCTTCTGTTTGATACCCCAGCTTTAC  149
      |||||||  || ||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAA--TC-TGGGTCACAGCTGCTTCTGTTTGATACCCCAGCTTTAC  137

seq1  ACAGACATCTTCACTTTGTACATTTTAGTGGAGGCAAATTAATCCATTTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATCTTCACTTTGTACATTTTAGTGGAGGCAAATTAATCCATTTC  187

seq1  TTAAAAAAAAAAGCTGAGATCTTTAGTGCAGTTCAAAGTAATTTTTCAAA  249
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTAAAAAAAAAAGCTGAGATCTTTAGTGCAGTTCAAAGTAA-TTTTCAAA  236

seq1  TATATCCTATTAGTCATCTGTGAGCCTTGATGCCTATGTTTCTGCTTGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCTATTAGTCATCTGTGAGCCTTGATGCCTATGTTTCTGCTTGGC  286

seq1  CTAAGAAACTGCACATGAGCACACTGTTGGCCTATAGGTGACCTACAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAACTGCACATGAGCACACTGTTGGCCTATAGGTGACCTACAGAA  336

seq1  GGGCACCACAGCTTGAGTTAATAATCAGCTGAGATGTGGTGCAGAGACAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCACAGCTTGAGTTAATAATCAGCTGAGATGTGGTGCAGAGACAG  386

seq1  GATTGTGCCCTTAAAGAACAAGCAGGGTGGTTTCCCACAGTTTCAAGTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGCCCTTAAAGAACAAGCAGGGTGGTTTCCCACAGTTTCAAGTGA  436

seq1  ACAAACTCAGCCATTTCCCTTCACTTCAGACTTCACTTGAGTGGTCTGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTCAGCCATTTCCCTTCACTTCAGACTTCACTTGAGTGGTCTGAA  486

seq1  GGTAGATTATTAATTTTAGAGGATTCCCAGGAATCTTAGCTTTTTTCCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATTATTAATTTTAGAGGATTCCCAGGAATCTTAGCTTTTTTCCTT  536

seq1  AGGGATCCAACTGCACACCGAGTTACCAACTTAGGGTTGATAAGGGCAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCCAACTGCACACCGAGTTACCAACTTAGGGTTGATAAGGGCAAG  586

seq1  ATAAGAGACACAGTTATTTGAAAGTGCCAGTACTAACTGTGATCTGATTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGACACAGTTATTTGAAAGTGCCAGTACTAACTGTGATCTGATTG  636

seq1  TGAGCCCTTTTATTTGGGGAGTTCTGTTTTCTCGCTTGCCTAGCTCTTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCTTTTATTTGGGGAGTTCTGTTTTCTCGCTTGCCTAGCTCTTTG  686

seq1  ATATTTCATTTCAAATTAGGTCATAATTAAAACTTATGTCCATTAAAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCATTTCAAATTAGGTCATAATTAAAACTTATGTCCATTAAAAAA  736

seq1  CAACAACAATAGGTTTTTGCTAAGGTAAAGATCAATCCAGATGACTCCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAATAGGTTTTTGCTAAGGTAAAGATCAATCCAGATGACTCCTA  786

seq1  TCTAAATTCTGTTTGTAAACAATGAAAATCATAGAGATTGCATTTTGAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATTCTGTTTGTAAACAATGAAAATCATAGAGATTGCATTTTGAAG  836

seq1  GACATTGTCTTTTTACCAGTCAAGTGGCAGCACACTTATGTGAATTCTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGTCTTTTTACCAGTCAAGTGGCAGCACACTTATGTGAATTCTTC  886

seq1  AGTACAGGTCTTCAGCATCAGCGCTCTGATAAAGGTCATTACAATTTACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGGTCTTCAGCATCAGCGCTCTGATAAAGGTCATTACAATTTACA  936

seq1  TAGGGAGTTTCAAGTGGCTGGGATGCTTATTCTTAAAAAAACAAACAAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGTTTCAAGTGGCTGGGATGCTTATTCTTAAAAAAACAAACAAAA  986

seq1  ACAAAAGACAATTCGAGTGTTTACTCTGTATTTTGCACTGCAGTGTGGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGACAATTCGAGTGTTTACTCTGTATTTTGCACTGCAGTGTGGTA  1036

seq1  ATTTTTGAGGGATGCTTATGCTGTCTTCTGTGTTGAGGGTCAGCACCTGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGAGGGATGCTTATGCTGTCTTCTGTGTTGAGGGTCAGCACCTGA  1086

seq1  ACACAGTAAGCCAACACCTCATGCATAAGTGAATTC  1135
      ||||||||||||||||||||||||||||||||||||
seq2  ACACAGTAAGCCAACACCTCATGCATAAGTGAATTC  1122

seq1: chr2_77124932_77125958
seq2: B6Ng01-138N13.g_69_1088

seq1  GAATTCTCTAATGGTCAGAAATGACTCTCATGTTTATCTACTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAATGGTCAGAAATGACTCTCATGTTTATCTACTTTTTTTTT  50

seq1  TTTTTTTTTTCTGAGCAAAACAAGGGCAAACCACATTTGGAAACAATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTCTGAGCAAAACAAGGGCAAACCACATTTGGAAACAATCTC  100

seq1  CACCCATCAGCAGGCTTCTTCCCACATGTCAGTCTTTCCAGCTGCCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATCAGCAGGCTTCTTCCCACATGTCAGTCTTTCCAGCTGCCCTGG  150

seq1  AGAGGTGCGTAAAACTGTGGCCGGCAGCTGAATGGCAGCCCACAGGAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGCGTAAAACTGTGGCCGGCAGCTGAATGGCAGCCCACAGGAAGT  200

seq1  TCCAAGGCTTGGAGTAAAGTCTCAGGAAGTGCTGTCAATACAGAAGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGCTTGGAGTAAAGTCTCAGGAAGTGCTGTCAATACAGAAGCAAA  250

seq1  GAATTGATTTGGTTGGTTGGGTAAAGTGGAAAATGGAAAAAATTGCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGATTTGGTTGGTTGGGTAAAGTGGAAAATGGAAAAAATTGCCTTT  300

seq1  TGTATTAATCTAAGTTTCCCTCTCCCCCTGAATACAACATTATTATGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAATCTAAGTTTCCCTCTCCCCCTGAATACAACATTATTATGTAA  350

seq1  CAAAGGGCCTTTAAGCAATTGCTTTCTCTTTTAAGTTGGCCATTCGACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGCCTTTAAGCAATTGCTTTCTCTTTTAAGTTGGCCATTCGACAA  400

seq1  ATACAGACTGTGTCACCCTGGGTTAGAGCCACTTCTTAGGGTGTGGGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGACTGTGTCACCCTGGGTTAGAGCCACTTCTTAGGGTGTGGGGTT  450

seq1  ACTTGATTCTGCACTGTGCATCAGTGTAATGAAAACACAAATTAGGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATTCTGCACTGTGCATCAGTGTAATGAAAACACAAATTAGGTTCA  500

seq1  TGCTTTGTGGACGATGTGTTCAATTTGGGGAGAGAAAGAGTGCTTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTGGACGATGTGTTCAATTTGGGGAGAGAAAGAGTGCTTTTCTT  550

seq1  TTGGGAACATATAATAGGAGCTACTGCATACATACGACTTAACCATTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAACATATAATAGGAGCTACTGCATACATACGACTTAACCATTTTA  600

seq1  TTCTAAACCTTAATTTTTTTATATGAAAAACTTTTCAGAAACACCAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAACCTTAATTTTTTTATATGAAAAACTTTTCAGAAACACCAACAA  650

seq1  TATATCCTAATCATCATTCCTAACGATGAAGAAAACTATTTTTTAACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCTAATCATCATTCCTAACGATGAAGAAAACTATTTTTTAACACA  700

seq1  GGGTCTTATTATACAGCACAGCCTTGCCTTGAACTCGTTATATTTTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTATTATACAGCACAGCCTTGCCTTGAACTCGTTATATTTTTTCT  750

seq1  GCCTCAGCCTCCCTAGAGCTGGAACTAAAGACTATGGTGCCCAGTTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCCTCCCTAGAGCTGGAACTAAAGACTATGGTGCCCAGTTTTAA  800

seq1  AATTGTATTTTCTTTATCTAGAC-TTCTCCATGTAAACTACAGCAGCAAA  849
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AATTGTATTTTCTTTATCTAGACTTTCTCCATGTAAACTACAGCAGCAAA  850

seq1  TTTAGGACAAGGGCTGTTGCTGCTACTTAGCTTAGCAACCAGATGAATAA  899
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTAAGACAAGGGCTGTTGCTGCTACTTAGCTTAGCAACCAGATGAAT-A  899

seq1  TGTTTGGGGTCTTGTCTAAAGATATTGTCC-TGTACCTCCTTCCAAGAAT  948
      ||||||||||||||||| |||||||||||| ||||||| ||||  || ||
seq2  TGTTTGGGGTCTTGTCT-AAGATATTGTCCTTGTACCTTCTTC--AG-AT  945

seq1  ATCTACAGATATTCCAAGATTTTGTGTTCAGGTCAAACTGATTACATTTA  998
      ||||||||||||||  |||||||||||||| ||| |||||||||||||||
seq2  ATCTACAGATATTC--AGATTTTGTGTTCA-GTC-AACTGATTACATTTA  991

seq1  GGAAAATGCATGATTCTGA-TGTTA-TGTGA  1027
      |  |||||||||||||||| ||||| |||||
seq2  G--AAATGCATGATTCTGATTGTTATTGTGA  1020