BAC Information

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BAC

Clone NameB6Ng01-138N20
Chromosome2 (Build37)
Map Location 179,452,917 - 179,613,837
singlet/doubletdoublet
Overlap geneCdh4
Upstream geneLOC100039368, LOC665264, LOC100043168, LOC100039413
Downstream geneTaf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138N20.bB6Ng01-138N20.g
ACCDH938002DH938003
length1,111431
definitionDH938002|Mus musculus domesticus DNA, BAC clone: B6Ng01-138N20, 5' end.DH938003|Mus musculus domesticus DNA, BAC clone: B6Ng01-138N20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(179,452,917 - 179,454,047)(179,613,401 - 179,613,837)
sequence
gaattcttagtctgagtttccaaggagatggccggtggctgtgtgggtgg
taccatgagattctgtgaagtattcgattccttgactggtattcgggcac
ctgatctagtttctatgagctatgaggtgtcggtaacaggacaccagtga
atgctgcaggattcgaggggactccctgggaagcaagagaaagctcactg
ggcacaggcatgaacaggcttgaacacagtttcaccccagctccacatgc
ggcctccccatccccgatgacgcccctgcccttagtggtcttcaggcctc
actgccctccattggctctgctcaatgtggctaaacctaagcaccatttc
ttcagcacaggtttggagccatctactgggtgcctggtatcagggtgaaa
gaaaaagagacagggattcccgaacccaccacaccaaagttttcaggacc
cgacagatgctgtggtcctcagggccccaaggtatacagaggccctgaaa
gtattatattctttataaatcaggaagaaaaagtcccacgacttgcatta
tggtttggtttggttttgtcttgttttgccaatatagtagaggattggaa
gtcccttggttttgaggaaggtagaatacaccaggtcagagaagccctgg
ctgagcctgagtctggcaaagttctggggagctacttggggtgcagtcca
acgggctgtgtgggaggccaccaaggaagattgtcgtatgtgaccaaggg
tgaggtctgcctgcaggaagaacctggggttctattgggatgagccagga
gacattgtgggtggaagaactgcagaaactgaaagactgacaacctgcct
taagtacggaaacaaagccctttgcatgggttctgttgctgctgtgctgg
gtgaccttgagcttggtggctcgcagtgggaagtctcacaggcagagcct
ttcccactgtaacccacctcattgtaatcactccagagcacccctgctcg
gctatgaccttcctcatctgtgagcgcagtcaatcttgctgactctgctt
ctgcctgagtcatgtctccattcgaaaccttaacagtccaagaaccctct
tttcatctcat
agggcttttagaggttggccatggtacttgctgctaggatgagtggctgg
taggtgccacagtgcctcatctggctagactcatagaaggttagcccagt
tctaaccccacagttgagtagccttctcaggcaggtaggtcactccagag
gacagcatatgctatactcttggttattgggatagatgtttctagaagaa
cctcaaaatctcggaggtaacaggtacagatccttggttctaaagttcgg
tggacttttgcctccggggaaataatttccaccctggtgagtgagccatc
tgcctgtgattgctacctgtggtttggataagagttttccaaagtcccag
gtattgaggacctggtctttggcctgtgcagtattaggggcgtagtagaa
tctagggtaggtatgggttagtgggagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_179452917_179454047
seq2: B6Ng01-138N20.b_47_1157

seq1  GAATTCTTAGTCTGAGTTTCCAAGGAGATGGCCGGTGGCTGTGTGGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTCTGAGTTTCCAAGGAGATGGCCGGTGGCTGTGTGGGTGG  50

seq1  TACCATGAGATTCTGTGAAGTATTCGATTCCTTGACTGGTATTCGGGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGAGATTCTGTGAAGTATTCGATTCCTTGACTGGTATTCGGGCAC  100

seq1  CTGATCTAGTTTCTATGAGCTATGAGGTGTCGGTAACAGGACACCAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTAGTTTCTATGAGCTATGAGGTGTCGGTAACAGGACACCAGTGA  150

seq1  ATGCTGCAGGATTCGAGGGGACTCCCTGGGAAGCAAGAGAAAGCTCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCAGGATTCGAGGGGACTCCCTGGGAAGCAAGAGAAAGCTCACTG  200

seq1  GGCACAGGCATGAACAGGCTTGAACACAGTTTCACCCCAGCTCCACATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGGCATGAACAGGCTTGAACACAGTTTCACCCCAGCTCCACATGC  250

seq1  GGCCTCCCCATCCCCGATGACGCCCCTGCCCTTAGTGGTCTTCAGGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCCCATCCCCGATGACGCCCCTGCCCTTAGTGGTCTTCAGGCCTC  300

seq1  ACTGCCCTCCATTGGCTCTGCTCAATGTGGCTAAACCTAAGCACCATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCTCCATTGGCTCTGCTCAATGTGGCTAAACCTAAGCACCATTTC  350

seq1  TTCAGCACAGGTTTGGAGCCATCTACTGGGTGCCTGGTATCAGGGTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCACAGGTTTGGAGCCATCTACTGGGTGCCTGGTATCAGGGTGAAA  400

seq1  GAAAAAGAGACAGGGATTCCCGAACCCACCACACCAAAGTTTTCAGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAGACAGGGATTCCCGAACCCACCACACCAAAGTTTTCAGGACC  450

seq1  CGACAGATGCTGTGGTCCTCAGGGCCCCAAGGTATACAGAGGCCCTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGATGCTGTGGTCCTCAGGGCCCCAAGGTATACAGAGGCCCTGAAA  500

seq1  GTATTATATTCTTTATAAATCAGGAAGAAAAAGTCCCACGACTTGCATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATATTCTTTATAAATCAGGAAGAAAAAGTCCCACGACTTGCATTA  550

seq1  TGGTTTGGTTTGGTTTTGTCTTGTTTTGCCAATATAGTAGAGGATTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGGTTTGGTTTTGTCTTGTTTTGCCAATATAGTAGAGGATTGGAA  600

seq1  GTCCCTTGGTTTTGAGGAAGGTAGAATACACCAGGTCAGAGAAGCCCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTGGTTTTGAGGAAGGTAGAATACACCAGGTCAGAGAAGCCCTGG  650

seq1  CTGAGCCTGAGTCTGGCAAAGTTCTGGGGAGCTACTTGGGGTGCAGTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCTGAGTCTGGCAAAGTTCTGGGGAGCTACTTGGGGTGCAGTCCA  700

seq1  ACGGGCTGTGTGGGAGGCCACCAAGGAAGATTGTCGTAGGTGACCAAGGG  750
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACGGGCTGTGTGGGAGGCCACCAAGGAAGATTGTCGTATGTGACCAAGGG  750

seq1  TGAGGTCTGCCTGCAGGAAGAACCTGGGGTTCTATTGGGATGAGCCAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCTGCCTGCAGGAAGAACCTGGGGTTCTATTGGGATGAGCCAGGA  800

seq1  GACATTGTGGGTGGAAGAACTGCAGAAACTGAAAGACTGACAACCTGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGTGGGTGGAAGAACTGCAGAAACTGAAAGACTGACAACCTGCCT  850

seq1  TAAGTACGGAAACAAAGCCCTTTGCATGGGTTCTGTTGCTGCTGTGCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACGGAAACAAAGCCCTTTGCATGGGTTCTGTTGCTGCTGTGCTGG  900

seq1  GTGACCTTGAGCTTGGTGGCTCGCAGGTGGGAAGTCTCACAGGGCAGAAG  950
      ||||||||||||||||||||||||| ||||||||||||||| ||||| ||
seq2  GTGACCTTGAGCTTGGTGGCTCGCA-GTGGGAAGTCTCACA-GGCAG-AG  947

seq1  CCTTTCCCACTGTAACCCACCTCCATTGTAATCCACTCCAGAGCCACCCC  1000
      |||||||||||||||||||||| ||||||||| |||||||||||   |||
seq2  CCTTTCCCACTGTAACCCACCT-CATTGTAAT-CACTCCAGAGC--ACCC  993

seq1  CTGCCTCGGCTATGACCTTTCCTCCATCCTGTGAGCCGCCAGTCACATCC  1050
      ||| ||||||||||||| ||||| ||| ||||||||   |||||| ||| 
seq2  CTG-CTCGGCTATGACC-TTCCT-CAT-CTGTGAGC--GCAGTCA-ATCT  1036

seq1  TGCTGACCTCTGCTTCTGCCCTGAGTCATGTCTCCATCCGAAACCCTTAA  1100
      |||||| ||||||||||| |||||||||||||||||| ||||| ||||||
seq2  TGCTGA-CTCTGCTTCTG-CCTGAGTCATGTCTCCATTCGAAA-CCTTAA  1083

seq1  CCAGTTCCAAAGACCCCTCTTTCCATCTCAT  1131
       ||||  | |||| |||||||| ||||||||
seq2  -CAGT--CCAAGAACCCTCTTTTCATCTCAT  1111

seq1: chr2_179613401_179613837
seq2: B6Ng01-138N20.g_71_507 (reverse)

seq1  CTCCCTCCCACTAACCCATACCTACCCTAGATTCTACTACGCCCCTAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCCACTAACCCATACCTACCCTAGATTCTACTACGCCCCTAATA  50

seq1  CTGCACAGGCCAAAGACCAGGTCCTCAATACCTGGGACTTTGGAAAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAGGCCAAAGACCAGGTCCTCAATACCTGGGACTTTGGAAAACTC  100

seq1  TTATCCAAACCACAGGTAGCAATCACAGGCAGATGGCTCACTCACCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAAACCACAGGTAGCAATCACAGGCAGATGGCTCACTCACCAGGG  150

seq1  TGGAAATTATTTCCCCGGAGGCAAAAGTCCACCGAACTTTAGAACCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATTATTTCCCCGGAGGCAAAAGTCCACCGAACTTTAGAACCAAGG  200

seq1  ATCTGTACCTGTTACCTCCGAGATTTTGAGGTTCTTCTAGAAACATCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTACCTGTTACCTCCGAGATTTTGAGGTTCTTCTAGAAACATCTAT  250

seq1  CCCAATAACCAAGAGTATAGCATATGCTGTCCTCTGGAGTGACCTACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATAACCAAGAGTATAGCATATGCTGTCCTCTGGAGTGACCTACCTG  300

seq1  CCTGAGAAGGCTACTCAACTGTGGGGTTAGAACTGGGCTAACCTTCTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAAGGCTACTCAACTGTGGGGTTAGAACTGGGCTAACCTTCTATG  350

seq1  AGTCTAGCCAGATGAGGCACTGTGGCACCTACCAGCCACTCATCCTAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGCCAGATGAGGCACTGTGGCACCTACCAGCCACTCATCCTAGCA  400

seq1  GCAAGTACCATGGCCAACCTCTAAAAGCCCTGAATTC  437
      |||||||||||||||||||||||||||||||||||||
seq2  GCAAGTACCATGGCCAACCTCTAAAAGCCCTGAATTC  437