BAC Information

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BAC

Clone NameB6Ng01-139A13
Chromosome2 (Build37)
Map Location 156,000,083 - 156,141,371
singlet/doubletdoublet
Overlap geneRbm39, Phf20, Scand1
Upstream geneItch, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik
Downstream geneLOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139A13.bB6Ng01-139A13.g
ACCDH938122DH938123
length1,182828
definitionDH938122|Mus musculus domesticus DNA, BAC clone: B6Ng01-139A13, 5' end.DH938123|Mus musculus domesticus DNA, BAC clone: B6Ng01-139A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,000,083 - 156,001,285)(156,140,790 - 156,141,371)
sequence
gaattctgagatggctaaaaccatgtcttctacattacttcaaattaggg
gatcaggttaaaattaattccatttcccccaaaaaatgagacagtaagtg
ttgctctgctccaagatggccgatagcagagtcgatctgcctataattac
ctctcataggcccccccaaccttattccaaaagttaaaaaaaaaaaaaag
ctaatttttactcaatgtctttccagacttttcgtaagcaaatgcccacc
cacatctgaaggcaacccaagataggtaaatagacaacatactttgaaat
cagaaaatacaatcttccatataaaagcccagataagattgttacaagaa
accaacatacttagaacaaattcgagcattagaaaacatttttcaactaa
agaaatggtcataaattccatcctaatagtcaaatcctgttacaacttaa
atgggactttcccaagtctttagtggcagtggaattttgtactgaacatc
attgaagtaaatggtcccctgggcctttggactttttggttatatggcct
ctgctgtaaaggtgttttgctataactggatttgacctcttccatgtaag
aagatctaaattttaaatgcaaagtattctggaaaataagaaaaaaaata
gaaaagtcatttattccaaaatttgataatcgacaccacagtagccaata
tatttttaactgtgccatttttactgttatccttttctgattctttaaag
actaaacaaaatgaaatttgatttgagactgcaaaactagttacagtaac
aaatgcttccatgaggggtaacctcagatacttggaggccttgacaaact
cagtgttaaagttttaaaactcttcagaaaataggctaaaaggttgttac
attaacattgatcccttactattgggatacaaacagtgtatgacagtcac
aattagtttctatacttagctacctgtcagaatgtagtttctatccttac
taccttaccagcaacagttaactccaacattcaatgctttaaattcatag
tatagcatgaacaataaaatgacatctaccttaggttaacataaattatc
taaacaagaacagggtatttgtgttcatctaccgagtaatggtttcttct
acatatgtcattactttaatgcagttctttca
gaattcctgtcctaactttggtgatggacagtaatgtggaagtgtaagct
gaataaaccctttcttctccgagttgcttattggtgttgatttttttgtc
acagctacagaaaccctgactaagcccctgtccctttctggaaaacggag
atacaaaacttttttgggagtcaaacagaatataccacctgccaaggggg
catcagagattatacttttgctggcaccatctgaattttcatagaaactt
ccatgaggttagttctgaaagtctcaaacccaggacagatggttgagttg
cctatttaacatgtcaaagagaacctggccaccaggtccacccagcatcc
ctcagccctgcctattacagtcctcctggcttgtataccctgacccctac
cccgaactctacagcccagtcggggaaggctgcccttcccccagaggctc
ttccctgtatcatacagccattttggttacctgctggcttcggacctttg
ggctttctggctgtggtacctggttctgccttccccctcctctctctcct
catggctcaggatgatgtcccctctggcctccctcagggtctctgactgt
ggccatgctttccctgttatctatactagaccttcccctccactgtgcct
aggaaccacagtcatgttcttttctttttattcctcttttccactcaagt
tcttgcattcagattttttattttatagattaaaacagcaacacctgtag
ctcaagaggctgaaggcaatggacctgacctaatgaaaacgtgtgtgtgt
gtgtgtgtgtgtgtgtggtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_156000083_156001285
seq2: B6Ng01-139A13.b_48_1229

seq1  GAATTCTGAGATGGCTAAAACCATGTCTTCTACATTACTTCAAATTAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGATGGCTAAAACCATGTCTTCTACATTACTTCAAATTAGGG  50

seq1  GATCAGGTTAAAATTAATTCCATTTCCCCCAAAAAATGAGACAGTAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGTTAAAATTAATTCCATTTCCCCCAAAAAATGAGACAGTAAGTG  100

seq1  TTGCTCTGCTCCAAGATGGCCGATAGCAGAGTCGATCTGCCTATAATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGCTCCAAGATGGCCGATAGCAGAGTCGATCTGCCTATAATTAC  150

seq1  CTCTCATAGGCCCCCCCAACCTTATTCCAAAAGTTAAAAAAAAAAAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATAGGCCCCCCCAACCTTATTCCAAAAGTTAAAAAAAAAAAAAAG  200

seq1  CTAATTTTTACTCAATGTCTTTCCAGACTTTTCGTAAGCAAATGCCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTTACTCAATGTCTTTCCAGACTTTTCGTAAGCAAATGCCCACC  250

seq1  CACATCTGAAGGCAACCCAAGATAGGTAAATAGACAACATACTTTGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGAAGGCAACCCAAGATAGGTAAATAGACAACATACTTTGAAAT  300

seq1  CAGAAAATACAATCTTCCATATAAAAGCCCAGATAAGATTGTTACAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATACAATCTTCCATATAAAAGCCCAGATAAGATTGTTACAAGAA  350

seq1  ACCAACATACTTAGAACAAATTCGAGCATTAGAAAACATTTTTCAACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACATACTTAGAACAAATTCGAGCATTAGAAAACATTTTTCAACTAA  400

seq1  AGAAATGGTCATAAATTCCATCCTAATAGTCAAATCCTGTTACAACTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGTCATAAATTCCATCCTAATAGTCAAATCCTGTTACAACTTAA  450

seq1  ATGGGACTTTCCCAAGTCTTTAGTGGCAGTGGAATTTTGTACTGAACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACTTTCCCAAGTCTTTAGTGGCAGTGGAATTTTGTACTGAACATC  500

seq1  ATTGAAGTAAATGGTCCCCTGGGCCTTTGGACTTTTTGGTTATATGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGTAAATGGTCCCCTGGGCCTTTGGACTTTTTGGTTATATGGCCT  550

seq1  CTGCTGTAAAGGTGTTTTGCTATAACTGGATTTGACCTCTTCCATGTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTAAAGGTGTTTTGCTATAACTGGATTTGACCTCTTCCATGTAAG  600

seq1  AAGATCTAAATTTTAAATGCAAAGTATTCTGGAAAATAAGAAAAAAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTAAATTTTAAATGCAAAGTATTCTGGAAAATAAGAAAAAAAATA  650

seq1  GAAAAGTCATTTATTCCAAAATTTGATAATCGACACCACAGTAGCCAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCATTTATTCCAAAATTTGATAATCGACACCACAGTAGCCAATA  700

seq1  TATTTTTAACTGTGCCATTTTTACTGTTATCCTTTTCTGATTCTTTAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAACTGTGCCATTTTTACTGTTATCCTTTTCTGATTCTTTAAAG  750

seq1  ACTAAACAAAATGAAATTTGATTTGAGACTGCAAAACTAGTTACAGTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACAAAATGAAATTTGATTTGAGACTGCAAAACTAGTTACAGTAAC  800

seq1  AAATGCTTCCATGAGGGGTAACCTCAGATACTTGGAGGCCTTGACAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTCCATGAGGGGTAACCTCAGATACTTGGAGGCCTTGACAAACT  850

seq1  CAGTGTTAAAGTTTTAAAACTCTTCAGAAAATAGGCTAAAAGGTTGTTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTAAAGTTTTAAAACTCTTCAGAAAATAGGCTAAAAGGTTGTTAC  900

seq1  ATTAAACATTGATCCCTTACTATTGGGATACAAACAGTGTATGACAAGTC  950
      ||| ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATT-AACATTGATCCCTTACTATTGGGATACAAACAGTGTATGAC-AGTC  948

seq1  ACAATTAGTTTCTATACTTAGCTACCTGTCAGAATGTAGTTTCCTATCCT  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACAATTAGTTTCTATACTTAGCTACCTGTCAGAATGTAGTTT-CTATCCT  997

seq1  TACTACCTTACCAGCAACAGTTAACTCCAACATTCAATGGCTTTAAATTC  1050
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TACTACCTTACCAGCAACAGTTAACTCCAACATTCAAT-GCTTTAAATTC  1046

seq1  AATAGTATTAGCATGAACCACATAAAAATGACATCTACCTTAGGTTAACA  1100
       |||||| ||||||||   |||  ||||||||||||||||||||||||||
seq2  -ATAGTA-TAGCATGA---ACAATAAAATGACATCTACCTTAGGTTAACA  1091

seq1  TAAATTATCTTAAAACAAGAACA-GGTATTTGTGTTTCATCTACCCCAGA  1149
      ||||||||||  ||||||||||| |||||||||| ||||||||||   ||
seq2  TAAATTATCT--AAACAAGAACAGGGTATTTGTG-TTCATCTACC---GA  1135

seq1  GTTAAATGTTTTCTTCTACATTATGTTCATTACTTTTAATGGCATGTTCT  1199
      ||  |||| ||||||||||| |||| ||||||| |||||| ||| |||||
seq2  GT--AATGGTTTCTTCTACA-TATG-TCATTAC-TTTAAT-GCA-GTTCT  1178

seq1  TTCA  1203
      ||||
seq2  TTCA  1182

seq1: chr2_156140790_156141371
seq2: B6Ng01-139A13.g_331_895 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACACACACACA  50
                      ||||||||||| ||||||||||||||||||||||
seq2  ----------------CACACACACAC-CACACACACACACACACACACA  33

seq1  CACACGTTTTCATTAGGTCAGGTCCATTGCCTTCAGCCTCTTGAGCTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGTTTTCATTAGGTCAGGTCCATTGCCTTCAGCCTCTTGAGCTACA  83

seq1  GGTGTTGCTGTTTTAATCTATAAAATAAAAAATCTGAATGCAAGAACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGCTGTTTTAATCTATAAAATAAAAAATCTGAATGCAAGAACTTG  133

seq1  AGTGGAAAAGAGGAATAAAAAGAAAAGAACATGACTGTGGTTCCTAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAAAGAGGAATAAAAAGAAAAGAACATGACTGTGGTTCCTAGGCA  183

seq1  CAGTGGAGGGGAAGGTCTAGTATAGATAACAGGGAAAGCATGGCCACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAGGGGAAGGTCTAGTATAGATAACAGGGAAAGCATGGCCACAGT  233

seq1  CAGAGACCCTGAGGGAGGCCAGAGGGGACATCATCCTGAGCCATGAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACCCTGAGGGAGGCCAGAGGGGACATCATCCTGAGCCATGAGGAG  283

seq1  AGAGAGGAGGGGGAAGGCAGAACCAGGTACCACAGCCAGAAAGCCCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAGGGGGAAGGCAGAACCAGGTACCACAGCCAGAAAGCCCAAAG  333

seq1  GTCCGAAGCCAGCAGGTAACCAAAATGGCTGTATGATACAGGGAAGAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGAAGCCAGCAGGTAACCAAAATGGCTGTATGATACAGGGAAGAGCC  383

seq1  TCTGGGGGAAGGGCAGCCTTCCCCGACTGGGCTGTAGAGTTCGGGGTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGGAAGGGCAGCCTTCCCCGACTGGGCTGTAGAGTTCGGGGTAGG  433

seq1  GGTCAGGGTATACAAGCCAGGAGGACTGTAATAGGCAGGGCTGAGGGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGGTATACAAGCCAGGAGGACTGTAATAGGCAGGGCTGAGGGATG  483

seq1  CTGGGTGGACCTGGTGGCCAGGTTCTCTTTGACATGTTAAATAGGCAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGGACCTGGTGGCCAGGTTCTCTTTGACATGTTAAATAGGCAACT  533

seq1  CAACCATCTGTCCTGGGTTTGAGACTTTCAGA  582
      ||||||||||||||||||||||||||||||||
seq2  CAACCATCTGTCCTGGGTTTGAGACTTTCAGA  565