BAC Information

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BAC

Clone NameB6Ng01-139D04
Chromosome2 (Build37)
Map Location 162,105,970 - 162,272,216
singlet/doubletdoublet
Overlap genePtprt
Upstream geneLOC629655, LOC383770
Downstream geneLOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139D04.bB6Ng01-139D04.g
ACCDH938246DH938247
length1,0521,154
definitionDH938246|Mus musculus domesticus DNA, BAC clone: B6Ng01-139D04, 5' end.DH938247|Mus musculus domesticus DNA, BAC clone: B6Ng01-139D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,105,970 - 162,107,029)(162,271,066 - 162,272,216)
sequence
gaattcatattaataagattcaaaaaggaagccagatgacaaggacagaa
gaaactgaggtcaggttatcagtgacctactattcagaaaactcagccag
ctcctgattcaccagccagtggaagtagatcaagaggcgtcaagagtggg
aagaaacctccttcatgacctgggagtaactgatggtgaatggaaagatg
tctccctattacagaagttacctaactattataagctgccaatgaggtag
caaggaaaaaagagctggaattgaggctcagagataagactgaaccaaca
cccatgcctgccattgagagtctacatgcaggctccttgtcagatggctt
atggctcacaagtctcacaaagagtggtctttgccagtggtctttctcag
tctttgccactgagagcagcagtttatcttgaggaagagagacagcctga
gtagtgaaatgtctggactctctctgtcccagattgcatgatggcttcta
tatatactcagctttttagccacctgccaagccataccattaggcatgta
tctgcagcttcttataccccacagcagagaatgttaggaagtggtccttc
cactggttcatgccatcatttctgttcatcctagcttcagtagctgagca
atcctgccaagaatgttgcatttatcctattcaatgaagcctcatataca
attctggacacagagacagaggcaacgcccagtttccctacattgttcag
agtggctacagtactgagtttcaaagccattggagtatgctgtgcacctg
ttccatgtacagtccttaacaactggctttttctcatgcccacatccttc
attaccttctcttcctagttaatgatccttcattcacacctcagcatcat
ctaagagccagagacctgaaaatctcatccccccacattcctatagcatc
tgtacctacatttctatcagagcctcagtataatgcacatacatacatac
atgggatgactgaccccttctcgtctccagctgcactgatgttcagattt
ca
gaattctttaaggaaggcaacatacctatcacatccagtaaataacattc
cagccagggctggatggtgctctcaaatcaagtacacctgtattttgaag
caagaagcgtgaacatgctgcgttgttctacacatgtgtagttcctgcat
ttaggaggcatttaggaggatggtaaagttgagattaacctgcaggatga
caccctagattagaaaaaatttaaataaataaatatttttaagtagatca
tgggtataaatgaaatctttgcagcaaatagatttttatcaaactttaaa
aagaaatctttgacgtctaagcccttggggatttggagttcttagaatgg
ggccagacttctgcatctgactcctgggacagcttcatggcttgtgtgta
ggtaaaatgctcactgaccacactctgtagctcatggtagaatgctcagt
cttatcccaatacaattgtaaatgttttcaaattatccccactgagtgaa
gctgagtggagctttcccagagcctgatggtcttggccagactcttatgt
ttgcaaccagaactcctagaccctaagtttctcttcccacagccccgtgg
acctggctgtcctggcacacggctcccacaagccaagcgctatgttttgg
ctggcttttagttgttctagtagagaaggaaggagctaaatcagaaggtt
gccttcccgtcccacccctaggtgaaatcatcctttctgctgatcttttc
tttttcatggttgtaaaatagggagaaaattgagaacaatagcaacaacc
aaaagagcatttttcctcaaggcgagcatatgtgtgacactccattaacg
ctaagtgacatcttcttccttctcgcaggaatcaacacagtattcacgtt
aaccagtcatcgacgagccacaagcgggatgatgtcctgtcactttccat
cctatcagtcattttcggcagtgatgttgtctgttgatttccacttggaa
cagtcagtcagatgttttagtcaccctcagtcattttcccaagtgcctca
atggatcttcctgaggctcaaagcagaagccaaacaggaatccacaagaa
acagaacccaaggcctggttcttgagcttcatggacataaaggggtgggg
actt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_162105970_162107029
seq2: B6Ng01-139D04.b_46_1097

seq1  GAATTCATATTAATAAGATTCAAAAAGGAAGCCAGATGACAAGGACAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTAATAAGATTCAAAAAGGAAGCCAGATGACAAGGACAGAA  50

seq1  GAAACTGAGGTCAGGTTATCAGTGACCTACTATTCAGAAAACTCAGCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGAGGTCAGGTTATCAGTGACCTACTATTCAGAAAACTCAGCCAG  100

seq1  CTCCTGATTCACCAGCCAGTGGAAGTAGATCAAGAGGCGTCAAGAGTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGATTCACCAGCCAGTGGAAGTAGATCAAGAGGCGTCAAGAGTGGG  150

seq1  AAGAAACCTCCTTCATGACCTGGGAGTAACTGATGGTGAATGGAAAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACCTCCTTCATGACCTGGGAGTAACTGATGGTGAATGGAAAGATG  200

seq1  TCTCCCTATTACAGAAGTTACCTAACTATTATAAGCTGCCAATGAGGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTATTACAGAAGTTACCTAACTATTATAAGCTGCCAATGAGGTAG  250

seq1  CAAGGAAAAAAGAGCTGGAATTGAGGCTCAGAGATAAGACTGAACCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAAAAAGAGCTGGAATTGAGGCTCAGAGATAAGACTGAACCAACA  300

seq1  CCCATGCCTGCCATTGAGAGTCTACATGCAGGCTCCTTGTCAGATGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCCTGCCATTGAGAGTCTACATGCAGGCTCCTTGTCAGATGGCTT  350

seq1  ATGGCTCACAAGTCTCACAAAGAGTGGTCTTTGCCAGTGGTCTTTCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCACAAGTCTCACAAAGAGTGGTCTTTGCCAGTGGTCTTTCTCAG  400

seq1  TCTTTGCCACTGAGAGCAGCAGTTTATCTTGAGGAAGAGAGACAGCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCCACTGAGAGCAGCAGTTTATCTTGAGGAAGAGAGACAGCCTGA  450

seq1  GTAGTGAAATGTCTGGACTCTCTCTGTCCCAGATTGCATGATGGCTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGAAATGTCTGGACTCTCTCTGTCCCAGATTGCATGATGGCTTCTA  500

seq1  TATATACTCAGCTTTTTAGCCACCTGCCAAGCCATACCATTAGGCATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACTCAGCTTTTTAGCCACCTGCCAAGCCATACCATTAGGCATGTA  550

seq1  TCTGCAGCTTCTTATACCCCACAGCAGAGAATGTTAGGAAGTGGTCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCTTCTTATACCCCACAGCAGAGAATGTTAGGAAGTGGTCCTTC  600

seq1  CACTGGTTCATGCCATCATTTCTGTTCATCCTAGCTTCAGTAGCTGAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTTCATGCCATCATTTCTGTTCATCCTAGCTTCAGTAGCTGAGCA  650

seq1  ATCCTGCCAAGAATGTTGCATTTATCCTATTCAATGAAGCCTCATATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCCAAGAATGTTGCATTTATCCTATTCAATGAAGCCTCATATACA  700

seq1  ATTCTGGACACAGAGACAGAGGCAACGCCCAGTTTCCCTACATTGTTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGACACAGAGACAGAGGCAACGCCCAGTTTCCCTACATTGTTCAG  750

seq1  AGTGGCTACAGTACTGAGTTTCAAAGCCATTGGAGTATGCTGTGCACCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTACAGTACTGAGTTTCAAAGCCATTGGAGTATGCTGTGCACCTG  800

seq1  TTCCATGTACAGTCCTTAACAACTGGCTTTTTCTCATGCCCACATCCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGTACAGTCCTTAACAACTGGCTTTTTCTCATGCCCACATCCTTC  850

seq1  ATTACCTTCTCTTCCTAGTTAATGATCCTTCATTCACACCTCAGCATCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTTCTCTTCCTAGTTAATGATCCTTCATTCACACCTCAGCATCAT  900

seq1  CTAAGAGCCAGAAGACCTGAAAATCTCATCCCCCCACATTCCTATAGCAT  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGCCAG-AGACCTGAAAATCTCATCCCCCCACATTCCTATAGCAT  949

seq1  CTGTACCTACATTTCTATCAAGAGCCTCAAGTAATAATGCACATACATAC  1000
      ||||||||||||||||||| |||||||| ||| |||||||||||||||||
seq2  CTGTACCTACATTTCTATC-AGAGCCTC-AGT-ATAATGCACATACATAC  996

seq1  ATACATGGGAATGACTGACCCCTTCTCGTCTCCCAGCTGCACTGAGTGTT  1050
      ||||||||| ||||||||||||||||||||| ||||||||||||| ||||
seq2  ATACATGGG-ATGACTGACCCCTTCTCGTCT-CCAGCTGCACTGA-TGTT  1043

seq1  CAGGATTTCA  1060
      || |||||||
seq2  CA-GATTTCA  1052

seq1: chr2_162271066_162272216
seq2: B6Ng01-139D04.g_66_1219 (reverse)

seq1  AAGTCCCCA-CCCTTTATGTCCATTGAAAGCCTAAAGAGCCAGGCACTTG  49
      ||||||||| ||||||||||||| ||||   || |||| |||||| ||||
seq2  AAGTCCCCACCCCTTTATGTCCA-TGAA--GCTCAAGAACCAGGC-CTTG  46

seq1  GGTTCTGCTTC-TGTGGA-TCCTGTTTGGCTTCTGCTCTGAGCCTCA-GA  96
      ||||||| ||| |||||| |||||||||||||||||| ||||||||| ||
seq2  GGTTCTGTTTCTTGTGGATTCCTGTTTGGCTTCTGCTTTGAGCCTCAGGA  96

seq1  AGATCCACTGA-GCACTTGGG-AAATGACTGA-GGTGCTAAAAACATCTG  143
      ||||||| ||| ||||||||| |||||||||| ||||   ||||||||||
seq2  AGATCCATTGAGGCACTTGGGAAAATGACTGAGGGTGACTAAAACATCTG  146

seq1  ACTGACTGTGTCCAAGTGGAAATC-ACAGAC-ACATCACTTGCCCGAAAA  191
      ||||||||| |||||||||||||| |||||| ||||||||   |||||||
seq2  ACTGACTGT-TCCAAGTGGAAATCAACAGACAACATCACT--GCCGAAAA  193

seq1  TGACTGATAGGATGGAAAGTGACAGGACATCAT-CCGCTTGTGGCTCCGT  240
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  TGACTGATAGGATGGAAAGTGACAGGACATCATCCCGCTTGTGGCT-CGT  242

seq1  CGATGACTGGTTAACGTGAATACTGTGTTGATTCCTGCGAGATGGAAGAA  290
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CGATGACTGGTTAACGTGAATACTGTGTTGATTCCTGCGAGAAGGAAGAA  292

seq1  GATGTCACTTAGCGTTAATGGAGTGTCACACATATGCTCGCCTTGAGG-A  339
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GATGTCACTTAGCGTTAATGGAGTGTCACACATATGCTCGCCTTGAGGAA  342

seq1  AAATGCTCTTTTGGTTGTTGCTATTGTTCTCAATTTTCTCCCTATTTTAC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCTTTTGGTTGTTGCTATTGTTCTCAATTTTCTCCCTATTTTAC  392

seq1  AACCATGAAAAAGAAAAGATCAGCAGAAAGGATGATTTCACCTAGGGGTG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGAAAAAGAAAAGATCAGCAGAAAGGATGATTTCACCTAGGGGTG  442

seq1  GGACGGGAAGGCAACCTTCTGATTTAGCTCCTTCCTTCTCTACTAGAACA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGGGAAGGCAACCTTCTGATTTAGCTCCTTCCTTCTCTACTAGAACA  492

seq1  ACTAAAAGCCAGCCAAAACATAGCGCTTGGCTTGTGGGAGCCGTGTGCCA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAGCCAGCCAAAACATAGCGCTTGGCTTGTGGGAGCCGTGTGCCA  542

seq1  GGACAGCCAGGTCCACGGGGCTGTGGGAAGAGAAACTTAGGGTCTAGGAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCAGGTCCACGGGGCTGTGGGAAGAGAAACTTAGGGTCTAGGAG  592

seq1  TTCTGGTTGCAAACATAAGAGTCTGGCCAAGACCATCAGGCTCTGGGAAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTGCAAACATAAGAGTCTGGCCAAGACCATCAGGCTCTGGGAAA  642

seq1  GCTCCACTCAGCTTCACTCAGTGGGGATAATTTGAAAACATTTACAATTG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACTCAGCTTCACTCAGTGGGGATAATTTGAAAACATTTACAATTG  692

seq1  TATTGGGATAAGACTGAGCATTCTACCATGAGCTACAGAGTGTGGTCAGT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGATAAGACTGAGCATTCTACCATGAGCTACAGAGTGTGGTCAGT  742

seq1  GAGCATTTTACCTACACACAAGCCATGAAGCTGTCCCAGGAGTCAGATGC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTTTACCTACACACAAGCCATGAAGCTGTCCCAGGAGTCAGATGC  792

seq1  AGAAGTCTGGCCCCATTCTAAGAACTCCAAATCCCCAAGGGCTTAGACGT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCTGGCCCCATTCTAAGAACTCCAAATCCCCAAGGGCTTAGACGT  842

seq1  CAAAGATTTCTTTTTAAAGTTTGATAAAAATCTATTTGCTGCAAAGATTT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATTTCTTTTTAAAGTTTGATAAAAATCTATTTGCTGCAAAGATTT  892

seq1  CATTTATACCCATGATCTACTTAAAAATATTTATTTATTTAAATTTTTTC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATACCCATGATCTACTTAAAAATATTTATTTATTTAAATTTTTTC  942

seq1  TAATCTAGGGTGTCATCCTGCAGGTTAATCTCAACTTTACCATCCTCCTA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTAGGGTGTCATCCTGCAGGTTAATCTCAACTTTACCATCCTCCTA  992

seq1  AATGCCTCCTAAATGCAGGAACTACACATGTGTAGAACAACGCAGCATGT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTCCTAAATGCAGGAACTACACATGTGTAGAACAACGCAGCATGT  1042

seq1  TCACGCTTCTTGCTTCAAAATACAGGTGTACTTGATTTGAGAGCACCATC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGCTTCTTGCTTCAAAATACAGGTGTACTTGATTTGAGAGCACCATC  1092

seq1  CAGCCCTGGCTGGAATGTTATTTACTGGATGTGATAGGTATGTTGCCTTC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTGGCTGGAATGTTATTTACTGGATGTGATAGGTATGTTGCCTTC  1142

seq1  CTTAAAGAATTC  1151
      ||||||||||||
seq2  CTTAAAGAATTC  1154