BAC Information

Click to search

BAC

Clone NameB6Ng01-139D19
Chromosome2 (Build37)
Map Location 165,656,740 - 165,790,339
singlet/doubletdoublet
Overlap genePrkcbp1, LOC546780
Upstream geneNeurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2
Downstream geneNcoa3, Sulf2, LOC670775, Ppia-ps2_2197.1, BC067047, Trp53rk, Arfgef2, LOC670802, Cse1l, Stau1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139D19.bB6Ng01-139D19.g
ACCDH938274DH938275
length1,126152
definitionDH938274|Mus musculus domesticus DNA, BAC clone: B6Ng01-139D19, 5' end.DH938275|Mus musculus domesticus DNA, BAC clone: B6Ng01-139D19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,656,740 - 165,657,886)(165,790,188 - 165,790,339)
sequence
gaattccacagattagccagggccacacagagagatcctgtcccaaacaa
ccaagcaaacaaacataagtctaccataaccaaggctatcacaaacaaca
acaacaacaaaaaaaaaccctgtctggggagagatgggggctcacccaga
accaagaattctcctgggaagagtgtgcaccccagttccttcagatgggg
ataccttaggcctccaaagtgttggcattaaggtactgttcacacaacca
cagtggggccaccgtgcctaaaagcaacccaccagattagcacaggagag
tcttaacccattaagatggcgaacacctcaaatgctcttcgaggagccgg
ctaaggcacagccagccgccagctcctcctgctctaaaaacagaaagcaa
attcttacttgcctctccccagagcacccagttcaaaccactaattacag
cccaggctccagacacagcccttcactgggcgctgcccatctagccaggt
ccaccagggccttcataccaagcatttcctacagatgggagacagggagc
ctagcttggacaagtgtctgcctgcgtgctgaagcaatgcaccatgggag
agagcccgagggagcacattcctttaactgaaggaatgctgacattcggg
atgaattctaccaggacagggtggggagagggcttgcctagcctacagga
agcctgggatccatccccaacaacacactaccaggtgtctaggtgtacgc
ctggaatttctgcactcaggatgtgggcaaagaagatcaggagtccaaca
taaaacaagttgagaccagttgaagctacatgagccccttccccccacag
acggggagtggtggtgggaaaattaaactgtgctgcaccccggcaagcca
gtattacctcaggactcacctattctctgacagggggaaccactggaatt
tctgtaagaaaatcaatctctctatatgagattttcatttcttttttgct
tgatcatcagccaagacatggacgagtgagatgttaatcagatgccgata
atacaaaaaaaaatctaatttcgtgccgcacatgaagtaaaccctacgca
tctacatctttcagatgcggggtggg
cctatgtagtccaggctagtctcgaacttgtgacaatcatcctaccccag
tcttccaagtgttgggattacaggcatgagccagcacacctagctaagca
gtaaataaacaaacctcagtatagtatcctttattaaggggggggggggg
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_165656740_165657886
seq2: B6Ng01-139D19.b_46_1171

seq1  GAATTCCACAGATTAGCCAGGGCCACACAGAGAGATCCTGTCCCAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGATTAGCCAGGGCCACACAGAGAGATCCTGTCCCAAACAA  50

seq1  CCAAGCAAACAAACATAAGTCTACCATAACCAAGGCTATCACAAACAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAAACAAACATAAGTCTACCATAACCAAGGCTATCACAAACAACA  100

seq1  ACAACAACAAAAAAAAACCCTGTCTGGGGAGAGATGGGGGCTCACCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAAAAAAAAACCCTGTCTGGGGAGAGATGGGGGCTCACCCAGA  150

seq1  ACCAAGAATTCTCCTGGGAAGAGTGTGCACCCCAGTTCCTTCAGATGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAATTCTCCTGGGAAGAGTGTGCACCCCAGTTCCTTCAGATGGGG  200

seq1  ATACCTTAGGCCTCCAAAGTGTTGGCATTAAGGTACTGTTCACACAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTAGGCCTCCAAAGTGTTGGCATTAAGGTACTGTTCACACAACCA  250

seq1  CAGTGGGGCCACCGTGCCTAAAAGCAACCCACCAGATTAGCACAGGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGGCCACCGTGCCTAAAAGCAACCCACCAGATTAGCACAGGAGAG  300

seq1  TCTTAACCCATTAAGATGGCGAACACCTCAAATGCTCTTCGAGGAGCCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACCCATTAAGATGGCGAACACCTCAAATGCTCTTCGAGGAGCCGG  350

seq1  CTAAGGCACAGCCAGCCGCCAGCTCCTCCTGCTCTAAAAACAGAAAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCACAGCCAGCCGCCAGCTCCTCCTGCTCTAAAAACAGAAAGCAA  400

seq1  ATTCTTACTTGCCTCTCCCCAGAGCACCCAGTTCAAACCACTAATTACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTACTTGCCTCTCCCCAGAGCACCCAGTTCAAACCACTAATTACAG  450

seq1  CCCAGGCTCCAGACACAGCCCTTCACTGGGCGCTGCCCATCTAGCCAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTCCAGACACAGCCCTTCACTGGGCGCTGCCCATCTAGCCAGGT  500

seq1  CCACCAGGGCCTTCATACCAAGCATTTCCTACAGATGGGAGACAGGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGGGCCTTCATACCAAGCATTTCCTACAGATGGGAGACAGGGAGC  550

seq1  CTAGCTTGGACAAGTGTCTGCCTGCGTGCTGAAGCAATGCACCATGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTGGACAAGTGTCTGCCTGCGTGCTGAAGCAATGCACCATGGGAG  600

seq1  AGAGCCCGAGGGAGCACATTCCTTTAACTGAAGGAATGCTGACATTCGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCGAGGGAGCACATTCCTTTAACTGAAGGAATGCTGACATTCGGG  650

seq1  ATGAATTCTACCAGGACAGGGTGGGGAGAGGGCTTGCCTAGCCTACAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTCTACCAGGACAGGGTGGGGAGAGGGCTTGCCTAGCCTACAGGA  700

seq1  AGCCTGGGATCCATCCCCAACAACACACTACCAGGTGTCTAGGTGTACGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGATCCATCCCCAACAACACACTACCAGGTGTCTAGGTGTACGC  750

seq1  CTGGAATTTCTGCACTCAGGATGTGGGCAAAGAAGATCAGGAGTCCAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTTCTGCACTCAGGATGTGGGCAAAGAAGATCAGGAGTCCAACA  800

seq1  TAAAACAAGTTGAGACCAGTTGAAGCTACATGAGCCCC-TCCCCCCACAG  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAAAACAAGTTGAGACCAGTTGAAGCTACATGAGCCCCTTCCCCCCACAG  850

seq1  ACGGGGGAGTGGTGGTGGGAAAATTAAACTGTGCTGCACCCCGCCAAAGC  899
      || |||||||||||||||||||||||||||||||||||||||| | ||||
seq2  AC-GGGGAGTGGTGGTGGGAAAATTAAACTGTGCTGCACCCCGGC-AAGC  898

seq1  CAGTATTACCTCAAGAACTCACCTATTCTCCTGACAGGGGGAACCACTGG  949
      |||||||||||| || ||||||||||||| ||||||||||||||||||||
seq2  CAGTATTACCTC-AGGACTCACCTATTCT-CTGACAGGGGGAACCACTGG  946

seq1  AATTTCTGTAAGAAACTCAATCTCTCTAATATTGAGATTTTTCATTTCTT  999
      ||||||||||||||| ||||||||||| ||| ||||| ||||||||||||
seq2  AATTTCTGTAAGAAAATCAATCTCTCT-ATA-TGAGA-TTTTCATTTCTT  993

seq1  TTTTGCTTTGATTCATCAGCCAAGCACGTGACAGAGTGAGCATGCTAATT  1049
      |||||| |||| |||||||||||| || ||   ||||||| ||| ||| |
seq2  TTTTGC-TTGA-TCATCAGCCAAG-ACATGGACGAGTGAG-ATGTTAA-T  1038

seq1  CAGATGCCGATTATCACAAAAAAAAAATCTATTTTCTGTGCGGCACATGA  1099
      ||||||||||| || || ||||||||||||| |||| |||| ||||||||
seq2  CAGATGCCGATAAT-AC-AAAAAAAAATCTAATTTC-GTGCCGCACATGA  1085

seq1  GTTTAACCCCTACTGCATTCCTACATCTTCTCAAGATGCGGGGGTGGG  1147
         ||| |||||| ||||  ||||||||| || |||||| ||||||||
seq2  -AGTAAACCCTAC-GCAT--CTACATCTT-TC-AGATGC-GGGGTGGG  1126

seq1: chr2_165790188_165790339
seq2: B6Ng01-139D19.g_72_223 (reverse)

seq1  CCCCCCCCCCCCCCCTTAATAAAGGATACTATACTGAGGTTTGTTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCCCTTAATAAAGGATACTATACTGAGGTTTGTTTATTT  50

seq1  ACTGCTTAGCTAGGTGTGCTGGCTCATGCCTGTAATCCCAACACTTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTAGCTAGGTGTGCTGGCTCATGCCTGTAATCCCAACACTTGGAA  100

seq1  GACTGGGGTAGGATGATTGTCACAAGTTCGAGACTAGCCTGGACTACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGGTAGGATGATTGTCACAAGTTCGAGACTAGCCTGGACTACATA  150

seq1  GG  152
      ||
seq2  GG  152