BAC Information

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BAC

Clone NameB6Ng01-139P05
Chromosome2 (Build37)
Map Location 76,914,469 - 77,081,440
singlet/doubletdoublet
Overlap gene2610301F02Rik, Sestd1
Upstream genePde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn
Downstream geneLOC623706, LOC667906, Zfp533, BC003993, LOC667920, OTTMUSG00000016703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139P05.bB6Ng01-139P05.g
ACCDH938806DH938807
length1,1911,085
definitionDH938806|Mus musculus domesticus DNA, BAC clone: B6Ng01-139P05, 5' end.DH938807|Mus musculus domesticus DNA, BAC clone: B6Ng01-139P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,080,237 - 77,081,440)(76,914,469 - 76,915,569)
sequence
gaattcaaggccagcttggtctacatagagaattccaggacagccagggc
tatgttgagagattctgtctcaacaaaacaaaagaaacaaaaagttcctt
tacacactcttaagtttttatctcttgactattattagttaaagccagtt
attctcaaactttttttttgataataaggaaaaatgtttttatcatttgg
aaatcacctgtataatccattttttaaaatttatattctaatcaacaaaa
aatgctattggatcactgtgtattaggtcgaatcctctgaaattgcggtt
tattgatgttagacaaagtggttcaatatcaacagttgcatagaaaatag
cccttaatggctgtcatgcctcgaatcgcatttctgtcactaatggaagt
cttttcaccttgggcctttcagtttttagtgatgaattgctagagattat
actgaattgttttcttcaggatttgctgggttttggtttttgattttaac
ctcctaaagctgttgtaaatgtcacttggttctgacagggggcttcagtg
ggagtaaacatgagcagaaatttggaagatggtcggtgtgtatcagagtt
ctaccggtttgcttgtttcatatgctgtgctgggaactgaattcagggtc
gtcagcagataggcaagcatttttactaagctgtctccatagtccttggt
tgtgaaaatctcattttatattcaggttggccttgaacttgctgtctgtt
ttctggcctttacctctcaagtgctgagatttcacgcgtgttcatcaagc
tgggtttaaaagttacatttaacatttaaagcaaatagaacacggactta
acacacatgagatttcagtgtgcttcactccctggctttctgctgtaacc
tccaggtcctgctccacatcctcagctggacagagctgtgtctgcagcca
tgtgagcggtctgcagctgcctgtcctgcctgtacacagcggtacccagt
gtgcttattgctgaatgaatcaattaaatctatcatgtaggaaggcagct
ttccattgctttacatattaaccgcagattatgtttctttcgtgagtaac
tcgaacgtctccccatgggagttctggaactggtggaaaatctaagcctt
ttcccaagtctttacttttctaaacatgacgcagcttattt
gaattccatgatcgtgggcccactgtcgtacttctctggctgtgaaatga
tgttctctacatcaagtcatctccccaaccacctccatcaagatattgtc
ttaaaataagagttttaaactccattgttttctgcattggcagacagact
gaccaactgcccaacatagacgatggagtttacaaaattaacatgacata
caaaggagctgtttattggctagcgaggcttagatagcaagaagatacag
aagcactgggctagagggatgtctcggcagttaagcaggcatgctgttct
cacagaacacctgacctttgttcctagatcccacattgggaggcagacaa
ccttctgcaacttcagctctagggaaattcgtgtcttcttctggaaacta
cagacatctgtatttgtgtttatgtaccccccccccacacacacacactg
caaacaacctagaagtaataaaaataaaaagttataaaacacataagaat
aataaggactaattttaaaagacattttaaaaagataaagcagagttcag
tctttgtaggtctcctgatagccatttctgacctctggcctggagagggg
aagagtaaagtgagtgaaggaaaggttgaacatcaagagaagccttcttc
tggtcagcgctagtggagcctccctgccgaatgttctatgcccctctgaa
gaccacttctatcataaaagttggatagtaccgtgtaacaccaggtagtc
cagcaagcgccttgaagtccagcctttccagattgctaagtgggaatttg
gcaggggcccattagaatggagtagggataccccacagaagactgtcagg
gaggattccagaccatccgagacaagaacgggtgggctagtggaagcccc
agggaggcagcaaagtggggctgagttcattctcatacgagcactttgag
atgtcagcctagaatgaagatagaacatgtgccccagtgcaccgcaaatc
aacagaaaagaatggaatctcagaaatctcctcagatattcttttgtgag
attcctttcttctccaatgtcctcaatcttcaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_77080237_77081440
seq2: B6Ng01-139P05.b_50_1240 (reverse)

seq1  AAATAAGCTGTGCTAAGTATAAGAAAAGTAAAGACTTGAGGAAAAGCTGT  50
      |||||||||| |  | || | ||||||||||||||||| |||||||   |
seq2  AAATAAGCTGCGTCATGT-TTAGAAAAGTAAAGACTTG-GGAAAAGGCTT  48

seq1  AGAATTTTTCAAACAAGTTACAGGAACATCCCATGGTGGGAGACGGTCTG  100
      |||  |||||  || |||| || |||| |||||||  |||||||| || |
seq2  AGA--TTTTC-CACCAGTTCCA-GAAC-TCCCATG--GGGAGACGTTC-G  90

seq1  AGTTTACTCACAGAAGAAACATAAATCTGCGTGTAATATGTAAAGCAATG  150
      || ||||||||  ||||||||| ||||||||  |||||||||||||||||
seq2  AG-TTACTCACGAAAGAAACAT-AATCTGCGGTTAATATGTAAAGCAATG  138

seq1  GAAGGCTGCCTTCCTACATGATAGATTTAATTGATTCATTCAGCAAATAG  200
      ||| ||||||||||||||||||||||||||||||||||||||||||  ||
seq2  GAAAGCTGCCTTCCTACATGATAGATTTAATTGATTCATTCAGCAATAAG  188

seq1  CACACTGGGTTACCGCTGTGTACAGGCAGGACAGGCAGCTGCAGACCGCT  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGGG-TACCGCTGTGTACAGGCAGGACAGGCAGCTGCAGACCGCT  237

seq1  CACATGGCTGCAGACACAGCTCTGTCCAGCTGAGGATGTGGAGCAGGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGCTGCAGACACAGCTCTGTCCAGCTGAGGATGTGGAGCAGGACC  287

seq1  TGGAGGTTACAGCAGAAAGCCAGGGAGTGGAGCACACTGAAATCTCATGT  350
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGAGGTTACAGCAGAAAGCCAGGGAGTGAAGCACACTGAAATCTCATGT  337

seq1  GTGTTAAGTCCGTGTTCTATTTGCCTTAAATGTTAAATGTAACTTTTAAA  400
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTGTTAAGTCCGTGTTCTATTTGCTTTAAATGTTAAATGTAACTTTTAAA  387

seq1  CCCAGCCTGATGAACACGCCTGAAATCTCAGCACTTGAGAGGTAAAGGCC  450
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCAGCTTGATGAACACGCGTGAAATCTCAGCACTTGAGAGGTAAAGGCC  437

seq1  AGAAAACAGACAGCAAGTTCAAGGCCAACCTGAATATAAAATGAGATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAGACAGCAAGTTCAAGGCCAACCTGAATATAAAATGAGATTTT  487

seq1  CACAACCAAGGACTATGGAGACAGCTTAGTAAAAATGCTTGCCTATCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCAAGGACTATGGAGACAGCTTAGTAAAAATGCTTGCCTATCTGC  537

seq1  TGACGACCCTGAATTCAGTTCCCAGCACAGCATATGAAACAAGCAAACCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGACCCTGAATTCAGTTCCCAGCACAGCATATGAAACAAGCAAACCG  587

seq1  GTAGAACTCTGATACACACCGACCATCTTCCAAATTTCTGCTCATGTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACTCTGATACACACCGACCATCTTCCAAATTTCTGCTCATGTTTA  637

seq1  CTCCCACTGAAGCCCCCTGTCAGAACCAAGTGACATTTACAACAGCTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTGAAGCCCCCTGTCAGAACCAAGTGACATTTACAACAGCTTTA  687

seq1  GGAGGTTAAAATCAAAAACCAAAACCCAGCAAATCCTGAAGAAAACAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTAAAATCAAAAACCAAAACCCAGCAAATCCTGAAGAAAACAATT  737

seq1  CAGTATAATCTCTAGCAATTCATCACTAAAAACTGAAAGGCCCAAGGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATAATCTCTAGCAATTCATCACTAAAAACTGAAAGGCCCAAGGTGA  787

seq1  AAAGACTTCCATTAGTGACAGAAATGCGATTCGAGGCATGACAGCCATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTTCCATTAGTGACAGAAATGCGATTCGAGGCATGACAGCCATTA  837

seq1  AGGGCTATTTTCTATGCAACTGTTGATATTGAACCACTTTGTCTAACATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTATTTTCTATGCAACTGTTGATATTGAACCACTTTGTCTAACATC  887

seq1  AATAAACCGCAATTTCAGAGGATTCGACCTAATACACAGTGATCCAATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCGCAATTTCAGAGGATTCGACCTAATACACAGTGATCCAATAG  937

seq1  CATTTTTTGTTGATTAGAATATAAATTTTAAAAAATGGATTATACAGGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTGTTGATTAGAATATAAATTTTAAAAAATGGATTATACAGGTG  987

seq1  ATTTCCAAATGATAAAAACATTTTTCCTTATTATCAAAAAAAAAGTTTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAATGATAAAAACATTTTTCCTTATTATCAAAAAAAAAGTTTGA  1037

seq1  GAATAACTGGCTTTAACTAATAATAGTCAAGAGATAAAAACTTAAGAGTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACTGGCTTTAACTAATAATAGTCAAGAGATAAAAACTTAAGAGTG  1087

seq1  TGTAAAGGAACTTTTTGTTTCTTTTGTTTTGTTGAGACAGAATCTCTCAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGGAACTTTTTGTTTCTTTTGTTTTGTTGAGACAGAATCTCTCAA  1137

seq1  CATAGCCCTGGCTGTCCTGGAATTCTCTATGTAGACCAAGCTGGCCTTGA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCCTGGCTGTCCTGGAATTCTCTATGTAGACCAAGCTGGCCTTGA  1187

seq1  ATTC  1204
      ||||
seq2  ATTC  1191

seq1: chr2_76914469_76915569
seq2: B6Ng01-139P05.g_69_1153

seq1  GAATTCCATGATCGTGGGCCCACTGTCGTACTTCTCTGGCTGTGAAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGATCGTGGGCCCACTGTCGTACTTCTCTGGCTGTGAAATGA  50

seq1  TGTTCTCTACATCAAGTCATCTCCCCAACCACCTCCATCAAGATATTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTACATCAAGTCATCTCCCCAACCACCTCCATCAAGATATTGTC  100

seq1  TTAAAATAAGAGTTTTAAACTCCATTGTTTTCTGCATTGGCAGACAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAAGAGTTTTAAACTCCATTGTTTTCTGCATTGGCAGACAGACT  150

seq1  GACCAACTGCCCAACATAGACGATGGAGTTTACAAAATTAACATGACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAACTGCCCAACATAGACGATGGAGTTTACAAAATTAACATGACATA  200

seq1  CAAAGGAGCTGTTTATTGGCTAGCGAGGCTTAGATAGCAAGAAGATACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGCTGTTTATTGGCTAGCGAGGCTTAGATAGCAAGAAGATACAG  250

seq1  AAGCACTGGGCTAGAGGGATGTCTCGGCAGTTAAGCAGGCATGCTGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTGGGCTAGAGGGATGTCTCGGCAGTTAAGCAGGCATGCTGTTCT  300

seq1  CACAGAACACCTGACCTTTGTTCCTAGATCCCACATTGGGAGGCAGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACACCTGACCTTTGTTCCTAGATCCCACATTGGGAGGCAGACAA  350

seq1  CCTTCTGCAACTTCAGCTCTAGGGAAATTCGTGTCTTCTTCTGGAAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGCAACTTCAGCTCTAGGGAAATTCGTGTCTTCTTCTGGAAACTA  400

seq1  CAGACATCTGTATTTGTGTTTATGTACCCCCCCCCCACACACACACACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATCTGTATTTGTGTTTATGTACCCCCCCCCCACACACACACACTG  450

seq1  CAAACAACCTAGAAGTAATAAAAATAAAAAGTTATAAAACACATAAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACCTAGAAGTAATAAAAATAAAAAGTTATAAAACACATAAGAAT  500

seq1  AATAAGGACTAATTTTAAAAGACATTTTAAAAAGATAAAGCAGAGTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGACTAATTTTAAAAGACATTTTAAAAAGATAAAGCAGAGTTCAG  550

seq1  TCTTTGTAGGTCTCCTGATAGCCATTTCTGACCTCTGGCCTGGAGAGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTAGGTCTCCTGATAGCCATTTCTGACCTCTGGCCTGGAGAGGGG  600

seq1  AAGAGTAAAGTGAGTGAAGGAAAGGTTGAACATCAAGAGAAGCCTTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAAAGTGAGTGAAGGAAAGGTTGAACATCAAGAGAAGCCTTCTTC  650

seq1  TGGTCAGCGCTAGTGGAGCCTCCCTGCCGAATGTTCTATGCCCCTCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGCGCTAGTGGAGCCTCCCTGCCGAATGTTCTATGCCCCTCTGAA  700

seq1  GACCACTTCTATCATAAAAGTTGGATAGTACCGTGTAACACCAGGTAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTTCTATCATAAAAGTTGGATAGTACCGTGTAACACCAGGTAGTC  750

seq1  CAGCAAGCGCCTTGAAGTCCAGCCTTTCCAGATTGCTAAGTGGGAATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGCGCCTTGAAGTCCAGCCTTTCCAGATTGCTAAGTGGGAATTTG  800

seq1  GCAGGGGCCCATTAGAATGGAGTAGGGATACCCCACAGAAGACTGTCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGCCCATTAGAATGGAGTAGGGATACCCCACAGAAGACTGTCAGG  850

seq1  GAGGATTCCAGACCATCCGAGACAAGAACGGGTGGGCTAGTGGAGGCCCC  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAGGATTCCAGACCATCCGAGACAAGAACGGGTGGGCTAGTGGAAGCCCC  900

seq1  AGGGAGGCAGCAAAGTGGGGCTGAGTTCATTCTCATACGAGGCACTTTGA  950
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  AGGGAGGCAGCAAAGTGGGGCTGAGTTCATTCTCATACGA-GCACTTTG-  948

seq1  AGATGTCAGCCTTGGAATTGAGGATAGAACATGTGCCCCAAGTGCACCGC  1000
      |||||||||||| |  | ||| ||||||||||||||||| ||||||||||
seq2  AGATGTCAGCCTAG--AATGAAGATAGAACATGTGCCCC-AGTGCACCGC  995

seq1  CAAAATTCAAACAGAAAAGAATTGGAATCTACAGAAATCT-CTCAGATAT  1049
        ||||   |||||||||||| |||||||| ||||||||| |||||||||
seq2  --AAAT--CAACAGAAAAGAA-TGGAATCT-CAGAAATCTCCTCAGATAT  1039

seq1  TCTTTTATGTTGAGATTCTCTTCTTCCTCCAATGTCCTCACATCTTTCAG  1099
      ||||||    ||||||||  ||||| |||||||||||||| ||| |||||
seq2  TCTTTT---GTGAGATTCCTTTCTT-CTCCAATGTCCTCA-ATC-TTCAG  1083

seq1  GT  1101
      ||
seq2  GT  1085