BAC Information

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BAC

Clone NameB6Ng01-140J04
Chromosome2 (Build37)8 (Build37)
Map Location 142,776,686 - 142,777,69877,118,599 - 77,119,703
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140J04.bB6Ng01-140J04.g
ACCDH939264DH939265
length9091,081
definitionDH939264|Mus musculus domesticus DNA, BAC clone: B6Ng01-140J04, 5' end.DH939265|Mus musculus domesticus DNA, BAC clone: B6Ng01-140J04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,686 - 142,777,698)(77,118,599 - 77,119,703)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagagcaagccattgctgtt
ctgttcaggaatttttcccctggacccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
cctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatcttccatcttc
tgagatcttctttaatttctttcttcagagacttgaagttttatcataca
gatctttta
gaattctccatcaagaagataaaattctagttaaacctaaaatggcccca
ggagaagtacaagatggaggaatttctgtactgtcctgccctattacaac
tttgcagttctgagaaaatgacattttgaagacatttctacctacattga
ctgaagttcccttaaaatataatggccctggaaaaatctgactgagaact
attgagcaaatacatctaacatttgtgaatgagtacttagccatctttaa
atgggcaggcaagttgactgtcattaaatgagccaagactcgatgaactc
ctggagagcaaaaatagacagatgagacacagcagttgttacttaccatt
cttagctctcatgggtactaatggtatgcactggaactgtcatctttggc
taactgggcttcctggtgcttatttgtcatcctgaaagcatatacagtca
tagagtaaaggagaaggttgaagactatgtccccctccctccacattctt
cttctttgattttatcaagtgagatatttgctacactgtcccatccagca
ggacttagttgttccgtgggtcgaggaggatcagggcctgaaagagaaat
gagtggagaaagggaagcgaaaccaagcaaagagttgtcaaggtctgttt
aatgaaggctaggagcctaattataagcacatagtgagagaaaataggga
gggatcgagggggcataataaaatacagagaaagggatggacatctgggg
cgaatgctgattacaggcttcttgcagcttatcttggaatgtcggccctg
aaacagtcccgggcacaaacggagacatggaggaggaagtgaagttgcct
taacctaagcagttctagcacaagtgaaggagggagtgaagctggcagtc
ttcagcgcagtggaggcatgaagtggaggtgacataattcccttcaaggg
tcagtcggatctttaggataaaggtactgcgggactagtttccacagttt
gtctcttcacactacactaggctcagttctattgacaaatgggcatagtc
ttaattcatacatggccctgatcactcatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776686_142777698
seq2: B6Ng01-140J04.b_48_600 (reverse)

seq1  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  50

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGAC  100
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGAC  100

seq1  AGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  150

seq1  AATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  200

seq1  GGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  250

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAA  300
      |||||||||||||||||||||||||||||  ||||||| |||||||||||
seq2  AAAGTGGGGAAAAGCCTTGAAGATATGGGTCCAGGGGAAAAATTCCTGAA  300

seq1  CAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACC  350
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  CAGAACAGCAATGGCTTGCTCTGTAAGATCGAGAATTGACAAATGGGACC  350

seq1  TAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  400

seq1  AAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  450

seq1  TAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCA  500

seq1  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTG  550
      ||||||||||||||||||||||||||||||||||| ||            
seq2  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAA----------CT  540

seq1  GAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTAT  600
      ||| |||||    |||                                  
seq2  GAACAAAGA----ATTC---------------------------------  553

seq1  CATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTC  650
                                                        
seq2  --------------------------------------------------  553

seq1  AAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACT  700
                                                        
seq2  --------------------------------------------------  553

seq1  TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAA  750
                                                        
seq2  --------------------------------------------------  553

seq1  AATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGAC  800
                                                        
seq2  --------------------------------------------------  553

seq1  AAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGT  850
                                                        
seq2  --------------------------------------------------  553

seq1  CTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATC  900
                                                        
seq2  --------------------------------------------------  553

seq1  CTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAG  950
                                                        
seq2  --------------------------------------------------  553

seq1  GTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACT  1000
                                                        
seq2  --------------------------------------------------  553

seq1  GAACAAAGAATTC  1013
                   
seq2  -------------  553

seq1: chr8_77118599_77119703
seq2: B6Ng01-140J04.g_69_1149

seq1  GAATTCTCCATCAAGAAGATAAAATTCTAGTTAAACCTAAAATGGCCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATCAAGAAGATAAAATTCTAGTTAAACCTAAAATGGCCCCA  50

seq1  GGAGAAGTACAAGATGGAGGAATTTCTGTACTGTCCTGCCCTATTACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGTACAAGATGGAGGAATTTCTGTACTGTCCTGCCCTATTACAAC  100

seq1  TTTGCAGTTCTGAGAAAATGACATTTTGAAGACATTTCTACCTACATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGTTCTGAGAAAATGACATTTTGAAGACATTTCTACCTACATTGA  150

seq1  CTGAAGTTCCCTTAAAATATAATGGCCCTGGAAAAATCTGACTGAGAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTTCCCTTAAAATATAATGGCCCTGGAAAAATCTGACTGAGAACT  200

seq1  ATTGAGCAAATACATCTAACATTTGTGAATGAGTACTTAGCCATCTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGCAAATACATCTAACATTTGTGAATGAGTACTTAGCCATCTTTAA  250

seq1  ATGGGCAGGCAAGTTGACTGTCATTAAATGAGCCAAGACTCGATGAACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAGGCAAGTTGACTGTCATTAAATGAGCCAAGACTCGATGAACTC  300

seq1  CTGGAGAGCAAAAATAGACAGATGAGACACAGCAGTTGTTACTTACCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGCAAAAATAGACAGATGAGACACAGCAGTTGTTACTTACCATT  350

seq1  CTTAGCTCTCATGGGTACTAATGGTATGCACTGGAACTGTCATCTTTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTCTCATGGGTACTAATGGTATGCACTGGAACTGTCATCTTTGGC  400

seq1  TAACTGGGCTTCCTGGTGCTTATTTGTCATCCTGAAAGCATATACAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGGCTTCCTGGTGCTTATTTGTCATCCTGAAAGCATATACAGTCA  450

seq1  TAGAGTAAAGGAGAAGGTTGAAGACTATGTCCCCCTCCCTCCACATTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTAAAGGAGAAGGTTGAAGACTATGTCCCCCTCCCTCCACATTCTT  500

seq1  CTTCTTTGATTTTATCAAGTGAGATATTTGCTACACTGTCCCATCCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGATTTTATCAAGTGAGATATTTGCTACACTGTCCCATCCAGCA  550

seq1  GGACTTAGTTGTTCCGTGGGTCGAGGAGGATCAGGGCCTGAAAGAGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTAGTTGTTCCGTGGGTCGAGGAGGATCAGGGCCTGAAAGAGAAAT  600

seq1  GAGTGGAGAAAGGGAAGCGAAACCAAGCAAAGAGTTGTCAAGGTCTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAGAAAGGGAAGCGAAACCAAGCAAAGAGTTGTCAAGGTCTGTTT  650

seq1  AATGAAGGCTAGGAGCCTAATTATAAGCACATAGTGAGAGAAAATAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGCTAGGAGCCTAATTATAAGCACATAGTGAGAGAAAATAGGGA  700

seq1  GGGATCGAGGGGGCATAATAAAATACAGAGAAAGGGATGGACATCTGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCGAGGGGGCATAATAAAATACAGAGAAAGGGATGGACATCTGGGG  750

seq1  CGAATGCTGATTACAGGCTTCTTGCAGCTTATCTTGGAATGTCGGCCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATGCTGATTACAGGCTTCTTGCAGCTTATCTTGGAATGTCGGCCCTG  800

seq1  AAACAGTCCCGGGCACCAAACGGAGACATGGAGGAGGAAGTGAAGTTGCC  850
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAACAGTCCCGGGCA-CAAACGGAGACATGGAGGAGGAAGTGAAGTTGCC  849

seq1  TTAACCTAAGCAGTTCTAGGCAACAAGTGAAGGAGGGAGTGAAGCTGGCA  900
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  TTAACCTAAGCAGTTCTAG--CACAAGTGAAGGAGGGAGTGAAGCTGGCA  897

seq1  GTCTCAGGCGCCAGGTGGAGGCAATGAAGGTGGAGGTGACATAATTCCCT  950
      ||||   ||||   |||||||| ||||| |||||||||||||||||||||
seq2  GTCTTCAGCGC--AGTGGAGGC-ATGAA-GTGGAGGTGACATAATTCCCT  943

seq1  TCAAAGGGTCAGCCGGATCTTTAGGATAAAAGTTACTGGCGGGACCTAGT  1000
      || ||||||||| |||||||||||||| |||| |||| |||||| |||||
seq2  TC-AAGGGTCAGTCGGATCTTTAGGAT-AAAGGTACT-GCGGGA-CTAGT  989

seq1  TTCCCACAGTTTGGTCTC-TCACACTACACTAAGCCTCAGTTTCCTTAAT  1049
      || ||||||||| ||||| |||||||||||| || |||||||  ||  ||
seq2  TT-CCACAGTTT-GTCTCTTCACACTACACT-AGGCTCAGTT--CT--AT  1032

seq1  TGTACAATGGGGCACTAGTCTTAAATTCATACCAGTGGGCCCTGTATCAC  1099
      || ||||  ||||| ||||||| |||||||||     ||||||| |||||
seq2  TG-ACAAATGGGCA-TAGTCTT-AATTCATAC---ATGGCCCTG-ATCAC  1075

seq1  TCATCT  1105
      ||||||
seq2  TCATCT  1081