BAC Information

Click to search

BAC

Clone NameB6Ng01-140M06
Chromosome2 (Build37)
Map Location 88,428,104 - 88,599,946
singlet/doubletdoublet
Overlap geneOlfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199
Upstream geneOlfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528
Downstream geneOlfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140M06.bB6Ng01-140M06.g
ACCDH939403DH939404
length9851,146
definitionDH939403|Mus musculus domesticus DNA, BAC clone: B6Ng01-140M06, 5' end.DH939404|Mus musculus domesticus DNA, BAC clone: B6Ng01-140M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,598,946 - 88,599,946)(88,428,104 - 88,429,283)
sequence
gaattccttataagaaattagtatggagtgtcagaacatacttctactgc
tttgagtaaaatgttttttacttaataacactcggtaaaactgatgacaa
tttatatagagatattaaatgatgattggcctttttctttaaagagttaa
tgacagtatgttgtggaagaaaattctaatgcagaatttgtttctatcaa
taaagttatcaataaatttattagcatatacaatatgtgctgataaagtg
aaataagtatataaaagggcatcaatagtatatgggaagaaatgggtgaa
tctgatatactattatttgttattatttcataaggtattaaactatgaaa
acattccccatatattttcatgtaaagtggtcaaatgagattaggctgag
caaaaactatctatgtacacccaaaatttaaaatacattatgcataacta
aaatttagaggaaaggatattagggaataatagtgttgacaaaacttctc
agaagtatctgctttgtgatgagcaagtgcagtacttgtggaattgtgta
tactaaagtataagatgattattttccacatgtttctgaaatgaaatccc
aaagctttcacatttggtgggcatatacccaaaatgtactttaagaactt
gactaacttcttttcagataaagttcagaccaactatgtcactggtgatg
cttaaaatatatgtaatgaagtcgaaggaaaaaataacatgtatggcagt
gttttctaatgtctcactaattcgctattttcttacagaaattaggtatc
atgttatcaactttagctctgagaaagaatgactacatagtaatttttca
caattgtgggaactatttaggaacatgaccttaagggtatgaatagtgaa
gttctgtttctctcccggttatttccagggttctttggtgatatggagat
tcaggaattaagtcaattggagagaatggagagga
gaattctcagagcacttcattaataaacatacaattctgtagaagcacaa
tatgttcagatacaattatgtttcaatttttaaaaatttaagatagatct
aatgtctattgtaagtatttacatttggttaatttactgtattttgtata
tgggaagattgaagacaatgttaaaacttatatacttttctgttttaaca
tccagaatactgtgttttataaaattggtttgatataagatataatacac
atttatcatattctacccccatatttattattttcgctttctccctattg
ttgttatttctatccatttctccagacaggttaacttctatatttacctc
atttacacatacacaatcttatgagtcttcatgagctctacattgcacgt
gggctttttgcagaattatatgttcagtagtcagtaagtaacctcataaa
agatctaacaatgctcactctgctttatgactttgctcactgcaaaatgc
atgctgtggtgtgtttctgcagttaggggactctatggctctgaaataat
ggcaaaaggaaagaagagaagagagattagtttgactcttattgaggaca
gtttgactgccagactacattgtttgagatgtgtgttagaaatagagaga
taattttgactgatttccagatctgaagaaaaaaaaatggggggtcattt
tatattgttccatagacatgtttcctattttaaactattttagttttgtg
attgcttataggaattcttacctggaagctgtaatactagatacagttaa
gatcaaaatatcttacgtattgatggagaagtcctatatgtgtcctcttt
gaggcccagccttccactattttattacataattttgagatgcataaatc
cacagtgtaccatatacacgagagtggtaaattcatttattctggttccc
aagatgtattcactctacatttttagtactcttgattttaaagacttgat
tagtgatagagaaagttggtgtagtatgcattttacattccagactccct
gccaacactctagtttatatataaatgggaggtaaagatgtattgatcaa
taacactgactatattattctgcaagaattaatctactaagacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_88598946_88599946
seq2: B6Ng01-140M06.b_48_1032 (reverse)

seq1  TCCTCTTCAATTCTCTCCAACTATGACTTAATTTCATGATTCATACCATA  50
      ||||| || |||||||||||   |||||||| ||| ||| ||   |||||
seq2  TCCTC-TCCATTCTCTCCAA--TTGACTTAA-TTCCTGAATC--TCCATA  44

seq1  TCAACCAAAGAAACACTGGAAAATAACCTGGGCAGAGAAACAGAAACTTA  100
      || ||||||| ||| |||| ||||||||  || |||||||||| ||||| 
seq2  TC-ACCAAAG-AACCCTGG-AAATAACC--GGGAGAGAAACAG-AACTT-  87

seq1  CACTATTCAATACCCTTAAGGTCTATGTTCCTAAATAGTTCCCACAATTG  150
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  CACTATTC-ATACCCTTAAGGTC-ATGTTCCTAAATAGTTCCCACAATTG  135

seq1  TGAAAAAATTACTATGTAGTCATTCTTTCTCAGGGCTTAAAGTTGATAAC  200
      || |||||||||||||||||||||||||||||| || |||||||||||||
seq2  TG-AAAAATTACTATGTAGTCATTCTTTCTCAGAGC-TAAAGTTGATAAC  183

seq1  ATGATACCTAATTTCTGTAAGGAAATAGCGAATTAGTGAGACATTAG-AA  249
      ||||||||||||||||||||| ||||||||||||||||||||||||| ||
seq2  ATGATACCTAATTTCTGTAAGAAAATAGCGAATTAGTGAGACATTAGAAA  233

seq1  ACACTGCCATACATGTTATTTTTTCCTTCGACTTCATTACATATATTTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCCATACATGTTATTTTTTCCTTCGACTTCATTACATATATTTTA  283

seq1  AGCATCACCAGTGACATAGTTGGTCTGAACTTTATCTGAAAAGAAGTTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCACCAGTGACATAGTTGGTCTGAACTTTATCTGAAAAGAAGTTAG  333

seq1  TCAAGTTCTTAAAGTACATTTTGGGTATATGCCCACCAAATGTGAAAGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTCTTAAAGTACATTTTGGGTATATGCCCACCAAATGTGAAAGCT  383

seq1  TTGGGATTTCATTTCAGAAACATGTGGAAAATAATCATCTTATACTTTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATTTCATTTCAGAAACATGTGGAAAATAATCATCTTATACTTTAG  433

seq1  TATACACAATTCCACAAGTACTGCACTTGCTCATCACAAAGCAGATACTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACAATTCCACAAGTACTGCACTTGCTCATCACAAAGCAGATACTT  483

seq1  CTGAGAAGTTTTGTCAACACTATTATTCCCTAATATCCTTTCCTCTAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGTTTTGTCAACACTATTATTCCCTAATATCCTTTCCTCTAAAT  533

seq1  TTTAGTTATGCATAATGTATTTTAAATTTTGGGTGTACATAGATAGTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTATGCATAATGTATTTTAAATTTTGGGTGTACATAGATAGTTTT  583

seq1  TGCTCAGCCTAATCTCATTTGACCACTTTACATGAAAATATATGGGGAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCCTAATCTCATTTGACCACTTTACATGAAAATATATGGGGAAT  633

seq1  GTTTTCATAGTTTAATACCTTATGAAATAATAACAAATAATAGTATATCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATAGTTTAATACCTTATGAAATAATAACAAATAATAGTATATCA  683

seq1  GATTCACCCATTTCTTCCCATATACTATTGATGCCCTTTTATATACTTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACCCATTTCTTCCCATATACTATTGATGCCCTTTTATATACTTAT  733

seq1  TTCACTTTATCAGCACATATTGTATATGCTAATAAATTTATTGATAACTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTATCAGCACATATTGTATATGCTAATAAATTTATTGATAACTT  783

seq1  TATTGATAGAAACAAATTCTGCATTAGAATTTTCTTCCACAACATACTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATAGAAACAAATTCTGCATTAGAATTTTCTTCCACAACATACTGT  833

seq1  CATTAACTCTTTAAAGAAAAAGGCCAATCATCATTTAATATCTCTATATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACTCTTTAAAGAAAAAGGCCAATCATCATTTAATATCTCTATATA  883

seq1  AATTGTCATCAGTTTTACCGAGTGTTATTAAGTAAAAAACATTTTACTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCATCAGTTTTACCGAGTGTTATTAAGTAAAAAACATTTTACTCA  933

seq1  AAGCAGTAGAAGTATGTTCTGACACTCCATACTAATTTCTTATAAGGAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTAGAAGTATGTTCTGACACTCCATACTAATTTCTTATAAGGAAT  983

seq1  TC  1001
      ||
seq2  TC  985

seq1: chr2_88428104_88429283
seq2: B6Ng01-140M06.g_69_1214

seq1  GAATTCTCAGAGCACTTCATTAATAAACATACAATTCTGTAGAAGCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAGCACTTCATTAATAAACATACAATTCTGTAGAAGCACAA  50

seq1  TATGTTCAGATACAATTATGTTTCAATTTTTAAAAATTTAAGATAGATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCAGATACAATTATGTTTCAATTTTTAAAAATTTAAGATAGATCT  100

seq1  AATGTCTATTGTAAGTATTTACATTTGGTTAATTTACTGTATTTTGTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTATTGTAAGTATTTACATTTGGTTAATTTACTGTATTTTGTATA  150

seq1  TGGGAAGATTGAAGACAATGTTAAAACTTATATACTTTTCTGTTTTAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGATTGAAGACAATGTTAAAACTTATATACTTTTCTGTTTTAACA  200

seq1  TCCAGAATACTGTGTTTTATAAAATTGGTTTGATATAAGATATAATACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAATACTGTGTTTTATAAAATTGGTTTGATATAAGATATAATACAC  250

seq1  ATTTATCATATTCTACCCCCATATTTATTATTTTCGCTTTCTCCCTATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCATATTCTACCCCCATATTTATTATTTTCGCTTTCTCCCTATTG  300

seq1  TTGTTATTTCTATCCATTTCTCCAGACAGGTTAACTTCTATATTTACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTTCTATCCATTTCTCCAGACAGGTTAACTTCTATATTTACCTC  350

seq1  ATTTACACATACACAATCTTATGAGTCTTCATGAGCTCTACATTGCACGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACACATACACAATCTTATGAGTCTTCATGAGCTCTACATTGCACGT  400

seq1  GGGCTTTTTGCAGAATTATATGTTCAGTAGTCAGTAAGTAACCTCATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTTTGCAGAATTATATGTTCAGTAGTCAGTAAGTAACCTCATAAA  450

seq1  AGATCTAACAATGCTCACTCTGCTTTATGACTTTGCTCACTGCAAAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTAACAATGCTCACTCTGCTTTATGACTTTGCTCACTGCAAAATGC  500

seq1  ATGCTGTGGTGTGTTTCTGCAGTTAGGGGACTCTATGGCTCTGAAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTGGTGTGTTTCTGCAGTTAGGGGACTCTATGGCTCTGAAATAAT  550

seq1  GGCAAAAGGAAAGAAGAGAAGAGAGATTAGTTTGACTCTTATTGAGGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGGAAAGAAGAGAAGAGAGATTAGTTTGACTCTTATTGAGGACA  600

seq1  GTTTGACTGCCAGACTACATTGTTTGAGATGTGTGTTAGAAATAGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACTGCCAGACTACATTGTTTGAGATGTGTGTTAGAAATAGAGAGA  650

seq1  TAATTTTGACTGATTTCCAGATCTGAAGAAAAAAAAATGGGGGGTCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGACTGATTTCCAGATCTGAAGAAAAAAAAATGGGGGGTCATTT  700

seq1  TATATTGTTCCATAGACATGTTTCCTATTTTAAACTATTTTAGTTTTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTTCCATAGACATGTTTCCTATTTTAAACTATTTTAGTTTTGTG  750

seq1  ATTGCTTATAGGAATTCTTACCTGGAAGCTGTAATACTAGATACAGTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTATAGGAATTCTTACCTGGAAGCTGTAATACTAGATACAGTTAA  800

seq1  GATCAAAATATCTTACGTATTGATGGAGAAGTCCTATATGTGTCCTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAATATCTTACGTATTGATGGAGAAGTCCTATATGTGTCCTCTTT  850

seq1  GAGGCCCAGCCTTCCACTATTTTATTACAATAATTTTGAGATGCATAAAT  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAGGCCCAGCCTTCCACTATTTTATTAC-ATAATTTTGAGATGCATAAAT  899

seq1  CCACAGTGTACCATATACAAGGAGAAGTGGTAAAATTCATTTATTCTGGT  950
      |||||||||||||||||| | ||| |||||| ||||||||||||||||||
seq2  CCACAGTGTACCATATAC-ACGAG-AGTGGT-AAATTCATTTATTCTGGT  946

seq1  TCCCAAAGATGTATTCACTCTACATTTTTAGTACTCTTGAATTTTAAAGA  1000
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCCC-AAGATGTATTCACTCTACATTTTTAGTACTCTTG-ATTTTAAAGA  994

seq1  CCTTGATTTAGTGATAGGAGAAGTTGGTGTTAGTATGCATTTTACATTTA  1050
       ||||| ||||||||||   ||||||||| ||||||||||||||||||  
seq2  -CTTGA-TTAGTGATAGAGAAAGTTGGTG-TAGTATGCATTTTACATT--  1039

seq1  CAAAGAACTCTCTGCCAACACTCTAGTTTAAATATTAATATGGAGAGTAA  1100
      | |   |||| ||||||||||||||||||| |||| |||  |||| ||||
seq2  CCA--GACTCCCTGCCAACACTCTAGTTTATATATAAAT-GGGAG-GTAA  1085

seq1  AAAGAATGTATTTGAATCAAATAATACATGACTTATATTTATGTCCTAGC  1150
      |    |||||||   ||| ||||| || |||| ||||||  | | |    
seq2  A---GATGTATT--GATC-AATAACAC-TGAC-TATATTATTCTGC----  1123

seq1  AAAGAAAATTTTAATACTTACTAAGACTTT  1180
       |||||    |||||   ||||||||||||
seq2  -AAGAA----TTAAT--CTACTAAGACTTT  1146