BAC Information

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BAC

Clone NameB6Ng01-141B11
Chromosome2 (Build37)
Map Location 80,815,849 - 81,017,842
singlet/doubletdoublet
Overlap geneLOC100040655
Upstream genePde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624
Downstream geneLOC100040704, Zfp804a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141B11.bB6Ng01-141B11.g
ACCDH939643DH939644
length1,0101,027
definitionDH939643|Mus musculus domesticus DNA, BAC clone: B6Ng01-141B11, 5' end.DH939644|Mus musculus domesticus DNA, BAC clone: B6Ng01-141B11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,815,849 - 80,816,883)(81,016,815 - 81,017,842)
sequence
gaattctgagagcttgctgtagacccttcctggataggttcttactttat
ggctttgcaggggtccaactcagctcttggtgtattggttactttatttc
ttctttggtactacagagatatagcttctctctgatacctgcaagctcaa
gtgggttgtgataaagacatccatgctctacctttatattctcacacaat
ctgaaacacttggcaagagaaaatcacaggagcagaggacatggtgtaga
aggggtaaatcttcatctgggtattactgatagtttcttgtcctcttggt
atccccacttcttccctgtggtccctcagctttccaaagtagtttttttt
tttttatgtttgtttttgtttttttgagacagtgtttctttgtaaagtct
ttattgtcttagaactagctctgtagaccaggctggtcttgatctcagag
atctgcctacctcttgagtgctgggattaaagatgagcctcaccaccacc
taacaaagtacttaatgtttgagcatttcttcttcctcctcctctgtgag
gagccgccctcacatttgccattataagatggccctgacagctgtgttct
aagtggtaaacataatctgcacacgtgcaggggcagtttttcccgccatg
tgttctgcctttcccgtgatgacaactgggccgatgggctgcagccaaat
cagggagtaacacgtcctaggtggaggataattctccttaaaagggacgg
ggttctggcactccctctcttcgtctcttgctctcttgctcttgctcctg
gagatgtaagcaataaagcttttgtcgcagaagattctggtttgttgcgt
tcttcctggccggtcgcgagatgcgtgtaagagttggtgcccaacccggg
aacttcttgcgcgcgctcactggccaagaagaacgacgctgcacaggatc
ctcttgcacacatttattcagcctgttcttcttctccaaatctcccctgg
tatatctccc
gaattcaaacttcctgaagtactaacaatatgtccagactaacaacaagt
ttaaccattttaaggtgcatttattaaagagcccatcaaataggtttcct
acaggaaaacattatgtacaaggacaaaaatatttattaggccacattgg
cctggaaactggcagggaatgaaacactgtacttgagaccagcattgtag
aatcataatgttcttggatacaaagaagagtgttttatcaagacttattt
atgtatctatttatttaattgtttctttattttgctatgctacttattag
actcaagactaccactgagctgtctctaacaatcaagattagtttaaaat
agattatttttatgtagttattccgatacagggtccatttcagaataaat
aaacctcaaaatgaagaagatgtgctgattcatacacaatttgtaattaa
tttaaagactaaaattataacgttgggccttgtttagatgtcttatatat
atatgtatatatatgaatgtacatatatatatatatgcattaatgaaaac
atcagaaaattcatgcaaacaggtagaatgatgattgctgactaatatcc
aaatgggtaaggatatacctcctagtgtctttatcttagaatatatcata
aaaaatcaatatttttaatatctaaaatatctctggtttatactcaggca
ttatatcattactcctgtgcttagaataaatatatgatattattataaat
aagtacatgttatatatgcatataatataataaaataaaagaaatatata
agtaaataaatataatagataaatatgtggtatattgtaatatatagatg
tatgtttacagccacctaatgagttacttacatatatacatacataacac
ttacatggggaaatataattataatataaaaaacaaatgtttacaaaaag
cacatgtggtcagggaagattatttaaatgcttgtaacccaaatgtagaa
aataacaattttaataaaaaaaaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_80815849_80816883
seq2: B6Ng01-141B11.b_51_1060

seq1  GAATTCTGAGAGCTTGCTGTAGACCCTTCCTGGATAGGTTCTTACTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGAGCTTGCTGTAGACCCTTCCTGGATAGGTTCTTACTTTAT  50

seq1  GGCTTTGCAGGGGTCCAACTCAGCTCTTGGTGTATTGGTTACTTTATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGCAGGGGTCCAACTCAGCTCTTGGTGTATTGGTTACTTTATTTC  100

seq1  TTCTTTGGTACTACAGAGATATAGCTTCTCTCTGATACCTGCAAGCTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGTACTACAGAGATATAGCTTCTCTCTGATACCTGCAAGCTCAA  150

seq1  GTGGGTTGTGATAAAGACATCCATGCTCTACCTTTATATTCTCACACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTGTGATAAAGACATCCATGCTCTACCTTTATATTCTCACACAAT  200

seq1  CTGAAACACTTGGCAAGAGAAAATCACAGGAGCAGAGGACATGGTGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACACTTGGCAAGAGAAAATCACAGGAGCAGAGGACATGGTGTAGA  250

seq1  AGGGGTAAATCTTCATCTGGGTATTACTGATAGTTTCTTGTCCTCTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTAAATCTTCATCTGGGTATTACTGATAGTTTCTTGTCCTCTTGGT  300

seq1  ATCCCCACTTCTTCCCTGTGGTCCCTCAGCTTTCCAAAGTAGTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCACTTCTTCCCTGTGGTCCCTCAGCTTTCCAAAGTAGTTTTTTTT  350

seq1  TTTTTATGTTTGTTTTTGTTTTTTTGAGACAGTGTTTCTTTGTAAAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGTTTGTTTTTGTTTTTTTGAGACAGTGTTTCTTTGTAAAGTCT  400

seq1  TTATTGTCTTAGAACTAGCTCTGTAGACCAGGCTGGTCTTGATCTCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTCTTAGAACTAGCTCTGTAGACCAGGCTGGTCTTGATCTCAGAG  450

seq1  ATCTGCCTACCTCTTGAGTGCTGGGATTAAAGATGAGCCTCACCACCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTACCTCTTGAGTGCTGGGATTAAAGATGAGCCTCACCACCACC  500

seq1  TAACAAAGTACTTAATGTTTGAGCATTTCTTCTTCCTCCTCCTCTGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGTACTTAATGTTTGAGCATTTCTTCTTCCTCCTCCTCTGTGAG  550

seq1  GAGCCGCCCTCACATTTGCCATTATAAGATGGCCCTGACAGCTGTGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGCCCTCACATTTGCCATTATAAGATGGCCCTGACAGCTGTGTTCT  600

seq1  AAGTGGTAAACATAATCTGCACACGTGCAGGGGCAG-TTTTCCCGCCATG  649
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGTGGTAAACATAATCTGCACACGTGCAGGGGCAGTTTTTCCCGCCATG  650

seq1  TGTTCTGCCTTTCCCGTGATGACAACTGGGCCGATGGGCTGCAGCC-AAT  698
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTTCTGCCTTTCCCGTGATGACAACTGGGCCGATGGGCTGCAGCCAAAT  700

seq1  CAGGGAGTAACACGTCCTAGGTGGAGGATAATTCTCCTTAAAAGGGACGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGTAACACGTCCTAGGTGGAGGATAATTCTCCTTAAAAGGGACGG  750

seq1  GGTTCTGGCACTCCCTCTCTTCGTCTCTTGCTCTCTTGCTCTTGCTCCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGGCACTCCCTCTCTTCGTCTCTTGCTCTCTTGCTCTTGCTCCTG  800

seq1  GAGATGTAAGCAATAAAGCTTTTGCCGCAGAAGATTCTGGTTTGTTGCGT  848
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAGATGTAAGCAATAAAGCTTTTGTCGCAGAAGATTCTGGTTTGTTGCGT  850

seq1  TCTTCCTGGCCGGTCGCGAGAATGCGTGTAAGAGTTGGTGCCGAAACCCG  898
      |||||||||||||||||||| |||||||||||||||||||||  ||||||
seq2  TCTTCCTGGCCGGTCGCGAG-ATGCGTGTAAGAGTTGGTGCC-CAACCCG  898

seq1  GGAACTTCTTGCGCGCGCTCAACTGGCCAGGAAGAACGACGCTGCTACAG  948
      |||||||||||||||||||| |||||||| ||||||||||||||| ||||
seq2  GGAACTTCTTGCGCGCGCTC-ACTGGCCAAGAAGAACGACGCTGC-ACAG  946

seq1  GATCCTTCTGCACACATTTATTCAGTCCTGTTTCTTCTTTCTCCATATAT  998
      ||||||  ||||||||||||||||| |||| |||||| ||||||  | ||
seq2  GATCCTCTTGCACACATTTATTCAG-CCTG-TTCTTC-TTCTCC--AAAT  991

seq1  CTCCCTTGTTTATATCTCCCCTGTTTATATATCTCCC  1035
      ||||| ||  ||||||||||                 
seq2  CTCCCCTG-GTATATCTCCC-----------------  1010

seq1: chr2_81016815_81017842
seq2: B6Ng01-141B11.g_68_1094 (reverse)

seq1  AATTTCTTTTCTATTTAAATTGCTAATTTTCTACATCTGTGTTATCAGCA  50
      ||||| |||| |||| |||||| | ||||||||||| || ||||  ||||
seq2  AATTTTTTTTTTATTAAAATTG-TTATTTTCTACATTTGGGTTACAAGCA  49

seq1  TTAAAATAAATCTT-CCTGA-CACATGTGCTTTTTGTAAAACTTTGTTTT  98
      || |||| |||||| ||||| |||||||||||||||||||  |||| |||
seq2  TTTAAAT-AATCTTCCCTGACCACATGTGCTTTTTGTAAACATTTG-TTT  97

seq1  TTTATATTATAATTATATTTTCCCCATGTATGTG-TATGTATGTATATAT  147
      ||||||||||||||||| |||||||||||| ||| |||||||||||||||
seq2  TTTATATTATAATTATA-TTTCCCCATGTAAGTGTTATGTATGTATATAT  146

seq1  GTAAGTAACTCATTAGGTGGCTGTAAAACATTACATCTATATATTACAAT  197
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  GTAAGTAACTCATTAGGTGGCTGT-AAACA-TACATCTATATATTACAAT  194

seq1  ATACCACATATTTATCTATTATATTTATTTACTTATATATTTC-TTTATT  246
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATACCACATATTTATCTATTATATTTATTTACTTATATATTTCTTTTATT  244

seq1  TTATTATATTATATGCATATATAACATGTACTTATTTATAATAATATCAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATATTATATGCATATATAACATGTACTTATTTATAATAATATCAT  294

seq1  ATATTTATTCTAAGCACAGGAGTAATGATATAATGCCTGAGTATAAACCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTCTAAGCACAGGAGTAATGATATAATGCCTGAGTATAAACCA  344

seq1  GAGATA-TTTAGATATTGAAAATATTGATTTTTTATGATATATTCTAAGA  395
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  GAGATATTTTAGATATTAAAAATATTGATTTTTTATGATATATTCTAAGA  394

seq1  TAAAGACACTAGGAGGTATATCCTTACCCATTTGGATATTAGTCAGCAAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACACTAGGAGGTATATCCTTACCCATTTGGATATTAGTCAGCAAT  444

seq1  CATCATTCTACCTGTTTGCATGAATTTTCTGATGTTTTCATTAATGCATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTCTACCTGTTTGCATGAATTTTCTGATGTTTTCATTAATGCATA  494

seq1  TATATATATATGTACATTCATATATATACATATATATATAAGACATCTAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATGTACATTCATATATATACATATATATATAAGACATCTAA  544

seq1  ACAAGGCCCAACGTTATAATTTTAGTCTTTAAATTAATTACAAATTGTGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCCCAACGTTATAATTTTAGTCTTTAAATTAATTACAAATTGTGT  594

seq1  ATGAATCAGCACATCTTCTTCATTTTGAGGTTTATTTATTCTGAAATGGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCAGCACATCTTCTTCATTTTGAGGTTTATTTATTCTGAAATGGA  644

seq1  CCCTGTATCGGAATAACTACATAAAAATAATCTATTTTAAACTAATCTTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTATCGGAATAACTACATAAAAATAATCTATTTTAAACTAATCTTG  694

seq1  ATTGTTAGAGACAGCTCAGTGGTAGTCTTGAGTCTAATAAGTAGCATAGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAGAGACAGCTCAGTGGTAGTCTTGAGTCTAATAAGTAGCATAGC  744

seq1  AAAATAAAGAAACAATTAAATAAATAGATACATAAATAAGTCTTGATAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGAAACAATTAAATAAATAGATACATAAATAAGTCTTGATAAA  794

seq1  ACACTCTTCTTTGTATCCAAGAACATTATGATTCTACAATGCTGGTCTCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTTCTTTGTATCCAAGAACATTATGATTCTACAATGCTGGTCTCA  844

seq1  AGTACAGTGTTTCATTCCCTGCCAGTTTCCAGGCCAATGTGGCCTAATAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGTGTTTCATTCCCTGCCAGTTTCCAGGCCAATGTGGCCTAATAA  894

seq1  ATATTTTTGTCCTTGTACATAATGTTTTCCTGTAGGAAACCTATTTGATG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTGTCCTTGTACATAATGTTTTCCTGTAGGAAACCTATTTGATG  944

seq1  GGCTCTTTAATAAATGCACCTTAAAATGGTTAAACTTGTTGTTAGTCTGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTTAATAAATGCACCTTAAAATGGTTAAACTTGTTGTTAGTCTGG  994

seq1  ACATATTGTTAGTACTTCAGGAAGTTTGAATTC  1028
      |||||||||||||||||||||||||||||||||
seq2  ACATATTGTTAGTACTTCAGGAAGTTTGAATTC  1027