BAC Information

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BAC

Clone NameB6Ng01-141K16
Chromosome2 (Build37)
Map Location 90,571,056 - 90,719,298
singlet/doubletdoublet
Overlap geneNup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2
Upstream geneOlfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik
Downstream geneC1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141K16.bB6Ng01-141K16.g
ACCDH940066DH940067
length1,081399
definitionDH940066|Mus musculus domesticus DNA, BAC clone: B6Ng01-141K16, 5' end.DH940067|Mus musculus domesticus DNA, BAC clone: B6Ng01-141K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,571,056 - 90,572,139)(90,718,883 - 90,719,298)
sequence
gaattccacattttgacaaccttctgtttttgttgttttgtttgtttagg
ggggagttgttctgtttgttgagacagggtgtcactgtagccctgactaa
cctaaaactcactgtgaactaggctggacttgaatttactatgtaaacca
ggctgggtttcaactcagaaatcctccagcctccatctccaggtatgggg
attaaaagtgtgcaacactaagccaaattgttttaatgcttcatgagcag
gtatgaatgacaatggaggctgaattgccctctggcttcctgtctgatga
taagactatattatgctctgtacactcccaccacactgcaataagctatg
atatagcagcacagcttcatgaatttatatgttctttatcattccagttt
tagtatatatgctgctgtggcaagtgcttctgattgggttagatgtacgc
ttgattgaaaatgatatctgaagcactttcagtgggataaggaaagagaa
tataaaaattattagtagtaaaattggttaggcatttgtaattacagaat
ttggaaggctgaggagaggattactgtgagttgaaggccagcctggtcta
tatatagcaaaaccctgtatcaaacaaacaaacaaaaacggaaaagttcg
gttggtagagtgcctggcatgtgggaagcactgagctcaaggatgtggtc
cacatgtagtgtcagcctgtgctacatgaaactctgccataaaagaggag
aagaaaatagagaaaagtagctaaagtgggagaagtaaaactgattacat
caagcagaggaggcagcttcactgtaatgaagtacagtggacccagcatg
ctggcctgcgctttaatcccagcttctcgggaggcagaaggcagatgaat
cgcttgggtttgaggccagcctggttctacacaggagtttccaggaccgc
cagggcgaacagaaaatctttttcaaaaaaaaaaaaaaagtacagcattc
tcttgtcttatgctgttttatgctttaatcaaggacattgatcatagcaa
ctctctgtataaggatacattttagttgggg
tggcagttagacaaaagccagcctccctcagaaacttggaaagctactgc
ccactttccaaacggagtccttctctttgtttctagcaaaggggacttat
ggcgcttctattcacacacacacacacacacacacacacacacacacaca
cacacacgactttttttgtctttgatactgttagtagtttagagaatggg
tagagttagtagtttagagaatgggtagttagtagtttagagaatgggta
gttagaattagtagtttacaggtgggtagctatagttagtagcttagaga
ctggggcagtagtccaggtgaggtgttggcccttctgcccagtgtgggga
ctcttattcctccagctgttagaatacagatttgtccatgtgcctctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_90571056_90572139
seq2: B6Ng01-141K16.b_47_1127

seq1  GAATTCCACATTTTGACAACCTTCTGTTTTTGTTGTTTTGTTTGTTTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATTTTGACAACCTTCTGTTTTTGTTGTTTTGTTTGTTTAGG  50

seq1  GGGGAGTTGTTCTGTTTGTTGAGACAGGGTGTCACTGTAGCCCTGACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTTGTTCTGTTTGTTGAGACAGGGTGTCACTGTAGCCCTGACTAA  100

seq1  CCTAAAACTCACTGTGAACTAGGCTGGACTTGAATTTACTATGTAAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAACTCACTGTGAACTAGGCTGGACTTGAATTTACTATGTAAACCA  150

seq1  GGCTGGGTTTCAACTCAGAAATCCTCCAGCCTCCATCTCCAGGTATGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGTTTCAACTCAGAAATCCTCCAGCCTCCATCTCCAGGTATGGGG  200

seq1  ATTAAAAGTGTGCAACACTAAGCCAAATTGTTTTAATGCTTCATGAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGTGTGCAACACTAAGCCAAATTGTTTTAATGCTTCATGAGCAG  250

seq1  GTATGAATGACAATGGAGGCTGAATTGCCCTCTGGCTTCCTGTCTGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAATGACAATGGAGGCTGAATTGCCCTCTGGCTTCCTGTCTGATGA  300

seq1  TAAGACTATATTATGCTCTGTACACTCCCACCACACTGCAATAAGCTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTATATTATGCTCTGTACACTCCCACCACACTGCAATAAGCTATG  350

seq1  ATATAGCAGCACAGCTTCATGAATTTATATGTTCTTTATCATTCCAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCAGCACAGCTTCATGAATTTATATGTTCTTTATCATTCCAGTTT  400

seq1  TAGTATATATGCTGCTGTGGCAAGTGCTTCTGATTGGGTTAGATGTACGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATATATGCTGCTGTGGCAAGTGCTTCTGATTGGGTTAGATGTACGC  450

seq1  TTGATTGAAAATGATATCTGAAGCACTTTCAGTGGGATAAGGAAAGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGAAAATGATATCTGAAGCACTTTCAGTGGGATAAGGAAAGAGAA  500

seq1  TATAAAAATTATTAGTAGTAAAATTGGTTAGGCATTTGTAATTACAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAATTATTAGTAGTAAAATTGGTTAGGCATTTGTAATTACAGAAT  550

seq1  TTGGAAGGCTGAGGAGAGGATTACTGTGAGTTGAAGGCCAGCCTGGTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGGCTGAGGAGAGGATTACTGTGAGTTGAAGGCCAGCCTGGTCTA  600

seq1  TATATAGCAAAACCCTGTATCAAACAAACAAACAAAAACGGAAAAGTTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGCAAAACCCTGTATCAAACAAACAAACAAAAACGGAAAAGTTCG  650

seq1  GTTGGTAGAGTGCCTGGCATGTGGGAAGCACTGAGCTCAAGGATGTGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTAGAGTGCCTGGCATGTGGGAAGCACTGAGCTCAAGGATGTGGTC  700

seq1  CACATGTAGTGTCAGCCTGTGCTACATGAAACTCTGCCATAAAAGAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTAGTGTCAGCCTGTGCTACATGAAACTCTGCCATAAAAGAGGAG  750

seq1  AAGAAAATAGAGAAAAGTAGCTAAAGTGGGAGAAGTAAAACTGATTACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATAGAGAAAAGTAGCTAAAGTGGGAGAAGTAAAACTGATTACAT  800

seq1  CAGAGCAGAGGAGGCAGCTTCACTGTAATGAAGTACAGTGGACCCAGGCA  850
      || ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CA-AGCAGAGGAGGCAGCTTCACTGTAATGAAGTACAGTGGACCCA-GCA  848

seq1  TGCTGGCCTGCGCCTTTAATCCCAGC-TCTCGGGAGGCAG-AGGCAGATG  898
      |||||||||||| ||||||||||||| ||||||||||||| |||||||||
seq2  TGCTGGCCTGCG-CTTTAATCCCAGCTTCTCGGGAGGCAGAAGGCAGATG  897

seq1  AATCGCTTGAGTTTGAGGCCAGCCTGG-TCTACACA-GAG-TTCCAGGAC  945
      ||||||||| ||||||||||||||||| |||||||| ||| |||||||||
seq2  AATCGCTTGGGTTTGAGGCCAGCCTGGTTCTACACAGGAGTTTCCAGGAC  947

seq1  CGCCAGGGCGACACAGAAAAACCTTCTCAAAAAAAAAAAAAAAAAAGTTA  995
      ||||||||||| |||||||| | || |||||||||||||||||     ||
seq2  CGCCAGGGCGA-ACAGAAAATCTTTTTCAAAAAAAAAAAAAAA----GTA  992

seq1  CAGCATTCTCCTTGTCTTACTGCTGTTTTACTGCTATGAACAGAGACCAT  1045
      ||||||||| ||||||||| |||||||||| |||| | | ||  |||  |
seq2  CAGCATTCT-CTTGTCTTA-TGCTGTTTTA-TGCTTTAATCAAGGACATT  1039

seq1  GACCAAGGCAACTCT---GATAAGGACAACATTTAGTTGGGG  1084
      || ||  ||||||||    ||||||| |   |||||||||||
seq2  GATCATAGCAACTCTCTGTATAAGGATACATTTTAGTTGGGG  1081

seq1: chr2_90718883_90719298
seq2: B6Ng01-141K16.g_69_473 (reverse)

seq1  GCAGAGGTGTGCAGACCTCACATGGAAACTGCTGTACTCTAACAGCTGGA  50
      |||||||           |||||||| |   ||||| |||||||||||||
seq2  GCAGAGG-----------CACATGGACAAATCTGTATTCTAACAGCTGGA  39

seq1  GGACTGAGAGTCCCCACACTGAACAGAAGGGCCAACACCTCACCTGGACT  100
      ||| | |||||||||||||||  |||||||||||||||||||||||||||
seq2  GGAATAAGAGTCCCCACACTGGGCAGAAGGGCCAACACCTCACCTGGACT  89

seq1  ACTGCCCCAGTCTCTAAGCTACTAACTATAGCTACCCACCTCTAAACTAC  150
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACTGCCCCAGTCTCTAAGCTACTAACTATAGCTACCCACCTGTAAACTAC  139

seq1  TAATTCTAACTACCCATTCTCTAAACTACTAACTACCCATTCTCTAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTAACTACCCATTCTCTAAACTACTAACTACCCATTCTCTAAACT  189

seq1  ACTAACTCTACCCATTCTCTAAACTACTAACAGTATCAAAGACAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTCTACCCATTCTCTAAACTACTAACAGTATCAAAGACAAAAAAA  239

seq1  GTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA  289

seq1  TAGAAGCGCCATAAGTCCCCTTTGCTAGAAACAAAGAGAAGGACTCCGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCGCCATAAGTCCCCTTTGCTAGAAACAAAGAGAAGGACTCCGTT  339

seq1  TGGAAAGTGGGCAGTAGCTTTCCAAGTTTCTGAGGGAGGCTGGCTTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTGGGCAGTAGCTTTCCAAGTTTCTGAGGGAGGCTGGCTTTTGT  389

seq1  CTAACTGCCAGAATTC  416
      ||||||||||||||||
seq2  CTAACTGCCAGAATTC  405