BAC Information

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BAC

Clone NameB6Ng01-142B22
Chromosome2 (Build37)
Map Location 126,023,021 - 126,177,598
singlet/doubletdoublet
Overlap geneAtp8b4
Upstream geneSlc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1, Cep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1
Downstream geneSlc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142B22.bB6Ng01-142B22.g
ACCDH940396DH940397
length1,2131,142
definitionDH940396|Mus musculus domesticus DNA, BAC clone: B6Ng01-142B22, 5' end.DH940397|Mus musculus domesticus DNA, BAC clone: B6Ng01-142B22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,176,354 - 126,177,598)(126,023,021 - 126,024,090)
sequence
gaattcactacaagggatggaagtgggcagatagacaggcatcctaaaag
acctgccacctaccccaagctgattcctcaggatcaatcaaagctgagca
ggctgaagtcagaggacaggcaccctagctggggactgcaggaaagggga
gcggtgcttactggctgggtggggccacagccattgaacaggactttgaa
cttcgtgaatttaaaggatgatttagtgattgaaggctgtcacagaaagg
gaggaatctccaagttcctcttctcaaatgactccagcttgcatcaggtt
gacataaaactaattagcacagatacactgaaaaaatttttcttccttct
tgtgtgagagctttcctggggagatacgtgttcactcacaaaagaaatgg
aacccacaatggaccaaagtaacaattgcagtaatgtccatcctggcgaa
ccaaccagttttccttggggtcactaacaggagtgtgagtaagggattac
ttacagggtcagagatgacatacaggtggctgtgtgtgtcagcacaaagc
cacatggtggcactcatgaaagctgtgaccctagagcactctgcacagct
tgcaggcagcatgaatggtctgagtgtctcttttctgctcagttggtcag
gctcctcctgctgctgggcctttttactcattttataaagctgggggtgg
tgggcttctagaaccttccaagtttaagctttttcgaacgtgtaatgcta
tgtttagctcttgaatttcatgtgtccctccctgcctcactactggggtg
cctagagtgctgccggtatactgctcaggagaggcagagcagagtctgta
acaggtggtcctcagtccatgatttcctggagtggaaaacaatggagtct
gggactattgctgtggtttctgccattgctggtgtgccactggaagtcca
gaacaggggaccttggtcagcttccctgaaggggaccacaagccaggcag
aaaggggaggcaaagcctggacagcagtagatctgggtttaatctgaatg
catgctgagagtataggggacttctttacatgagcaaccctaccttatga
tctgatgaagggtgtgagttcttagtctttttcagctgctttatgtgaca
gctatgtgagcaaacctactagtaaacgatgcaggaggagctatggctga
cctctcacgcata
gaattcagtgtatttgtaatttcaaaaatccatacctgaaaccctttgat
agtcatctgcaaacatgaatggaacagtagaaaatgtgttaccccaacac
acatactcctagttagtataaaataaagcaacatggcacttgtttcagtt
ctcagactataaataagggtcccctgtattcagtgccacatttcacttgt
ttgagtttatgtgttgacaacattgttcatggcataatggtctccactca
cagtattgagtgcctggttagtgttcacaaagtcgaaggcgattatgttc
tggcttatggagaaaatccatgtgtcagatatttttaattcaggctgaca
tataatgctgttggccttgagtctgataatcataaatcaaaaatatagtt
tgaataaggagccttaaataaaacacatggaagacagagttatatatata
tggctggttgacaaaaatgttttgatgagatacaggacttgaacccacat
tcacagaagaagccatgggccatctttcactatttcaatgtttccactga
catagtggatttattagtaattatcataagccatgagatgaatgtttcat
atatttgtacatgtacacaaatacaactctcatagttctttatttttact
ttatgtgcattggtgtttgcctgcatgtatgtttgtgaaggtagcagatt
tggaattgaagacacagacaattgtgagctgtcatgtgggtactgggaat
taaacctgggtcctctggaagaaagccagtgctcttgacctctgagtcat
ctcttcagtccccaactctgattattttaatatattattgtatcgtgtat
cttactattcttatatataatattctttgtactatatgcgctgtgttcca
gaaaggacacatatttactaaggacattttaaaatataaaacagtgtaga
ctgtgttttaaggtattctaacccatcagtctgggagaagctgaaatcga
ggcttttgtaaacttttctgggattatctgatgagagctttgtgatcaat
gtcggcatcttcatcttcattctgaccttagaccattcatggagtcagag
gtcgaagctcctcaattcccactaggaagggtcatctcactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_126176354_126177598
seq2: B6Ng01-142B22.b_41_1253 (reverse)

seq1  TATGCCCTGAGAGGTCAGCCAATGAGCTTCCCTTCCTGGGCACTCCTGTT  50
      |||| | ||||||||||||||   ||||   | |||||      | |  |
seq2  TATG-CGTGAGAGGTCAGCCA--TAGCT---CCTCCTG------CATCGT  38

seq1  TTACCTTGAGTAAAGTATTTGCCTTCACATTAGCTGTCACATAAAGCAGT  100
      ||||    ||||     |||||  ||||| ||||||||||||||||||| 
seq2  TTAC---TAGTA---GGTTTGC--TCACA-TAGCTGTCACATAAAGCAG-  78

seq1  TTGAACAAG--CAAGAAC-CAC-CTCTTCATCAAGGATCATAAAGGGTAG  146
       |||| |||   |||||| ||| | ||||||||  ||||||||  |||| 
seq2  CTGAAAAAGACTAAGAACTCACACCCTTCATCA--GATCATAA--GGTA-  123

seq1  GGGTTGCTTCATTGTAAAGAGTCCCCCTATACTCTCAGCATGCATTCAGG  196
      ||||||| ||| ||||||||   |||||||||||||||||||||||||| 
seq2  GGGTTGC-TCA-TGTAAAGAAGTCCCCTATACTCTCAGCATGCATTCAG-  170

seq1  AATTAAACCAGGTTCTACTGCTGTCCCAGGCTTTGCCTTCCCCTTTCTGC  246
       ||||||||  | ||||||||||| |||||||||||| ||||||||||||
seq2  -ATTAAACCCAGATCTACTGCTGT-CCAGGCTTTGCC-TCCCCTTTCTGC  217

seq1  CTGGCTTGTGGTCCCCCTTCAGGGGAAGCTTGACCAAGGTCCCCTGTTCT  296
      |||||||||||| |||||||| ||||||| ||||||||||||||||||||
seq2  CTGGCTTGTGGT-CCCCTTCA-GGGAAGC-TGACCAAGGTCCCCTGTTCT  264

seq1  GGACTTCCAGTGGCACACCAGCAATGGCAGAAACCACAGCAATAGTCCCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCCAGTGGCACACCAGCAATGGCAGAAACCACAGCAATAGTCCCA  314

seq1  GACTCCATTGTTTTCCACTCCAGGAAATCATGGACTGAGGACCACCTGTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCATTGTTTTCCACTCCAGGAAATCATGGACTGAGGACCACCTGTT  364

seq1  ACAGACTCTGCTCTGCCTCTCCTGAGCAGTATACCGGCAGCACTCTAGGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTCTGCTCTGCCTCTCCTGAGCAGTATACCGGCAGCACTCTAGGC  414

seq1  ACCCCAGTAGTGAGGCAGGGAGGGACACATGAAATTCAAGAGCTAAACAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGTAGTGAGGCAGGGAGGGACACATGAAATTCAAGAGCTAAACAT  464

seq1  AGCATTACACGTTCGAAAAAGCTTAAACTTGGAAGGTTCTAGAAGCCCAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTACACGTTCGAAAAAGCTTAAACTTGGAAGGTTCTAGAAGCCCAC  514

seq1  CACCCCCAGCTTTATAAAATGAGTAAAAAGGCCCAGCAGCAGGAGGAGCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCAGCTTTATAAAATGAGTAAAAAGGCCCAGCAGCAGGAGGAGCC  564

seq1  TGACCAACTGAGCAGAAAAGAGACACTCAGACCATTCATGCTGCCTGCAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAACTGAGCAGAAAAGAGACACTCAGACCATTCATGCTGCCTGCAA  614

seq1  GCTGTGCAGAGTGCTCTAGGGTCACAGCTTTCATGAGTGCCACCATGTGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCAGAGTGCTCTAGGGTCACAGCTTTCATGAGTGCCACCATGTGG  664

seq1  CTTTGTGCTGACACACACAGCCACCTGTATGTCATCTCTGACCCTGTAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGCTGACACACACAGCCACCTGTATGTCATCTCTGACCCTGTAAG  714

seq1  TAATCCCTTACTCACACTCCTGTTAGTGACCCCAAGGAAAACTGGTTGGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCTTACTCACACTCCTGTTAGTGACCCCAAGGAAAACTGGTTGGT  764

seq1  TCGCCAGGATGGACATTACTGCAATTGTTACTTTGGTCCATTGTGGGTTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCAGGATGGACATTACTGCAATTGTTACTTTGGTCCATTGTGGGTTC  814

seq1  CATTTCTTTTGTGAGTGAACACGTATCTCCCCAGGAAAGCTCTCACACAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTTGTGAGTGAACACGTATCTCCCCAGGAAAGCTCTCACACAA  864

seq1  GAAGGAAGAAAAATTTTTTCAGTGTATCTGTGCTAATTAGTTTTATGTCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGAAAAATTTTTTCAGTGTATCTGTGCTAATTAGTTTTATGTCA  914

seq1  ACCTGATGCAAGCTGGAGTCATTTGAGAAGAGGAACTTGGAGATTCCTCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATGCAAGCTGGAGTCATTTGAGAAGAGGAACTTGGAGATTCCTCC  964

seq1  CTTTCTGTGACAGCCTTCAATCACTAAATCATCCTTTAAATTCACGAAGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTGACAGCCTTCAATCACTAAATCATCCTTTAAATTCACGAAGT  1014

seq1  TCAAAGTCCTGTTCAATGGCTGTGGCCCCACCCAGCCAGTAAGCACCGCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCCTGTTCAATGGCTGTGGCCCCACCCAGCCAGTAAGCACCGCT  1064

seq1  CCCCTTTCCTGCAGTCCCCAGCTAGGGTGCCTGTCCTCTGACTTCAGCCT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTCCTGCAGTCCCCAGCTAGGGTGCCTGTCCTCTGACTTCAGCCT  1114

seq1  GCTCAGCTTTGATTGATCCTGAGGAATCAGCTTGGGGTAGGTGGCAGGTC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCTTTGATTGATCCTGAGGAATCAGCTTGGGGTAGGTGGCAGGTC  1164

seq1  TTTTAGGATGCCTGTCTATCTGCCCACTTCCATCCCTTGTAGTGAATTC  1245
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGATGCCTGTCTATCTGCCCACTTCCATCCCTTGTAGTGAATTC  1213

seq1: chr2_126023021_126024090
seq2: B6Ng01-142B22.g_155_1206

seq1  ACCCCAACACACATACTCCTAGTTAGTATAAAATAAAGCAACATGGCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAACACACATACTCCTAGTTAGTATAAAATAAAGCAACATGGCACT  50

seq1  TGTTTCAGTTCTCAGACTATAAATAAGGGTCCCCTGTATTCAGTGCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGTTCTCAGACTATAAATAAGGGTCCCCTGTATTCAGTGCCACA  100

seq1  TTTCACTTGTTTGAGTTTATGTGTTGACAACATTGTTCATGGCATAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTTGTTTGAGTTTATGTGTTGACAACATTGTTCATGGCATAATGG  150

seq1  TCTCCACTCACAGTATTGAGTGCCTGGTTAGTGTTCACAAAGTCGAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACTCACAGTATTGAGTGCCTGGTTAGTGTTCACAAAGTCGAAGGC  200

seq1  GATTATGTTCTGGCTTATGGAGAAAATCCATGTGTCAGATATTTTTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGTTCTGGCTTATGGAGAAAATCCATGTGTCAGATATTTTTAATT  250

seq1  CAGGCTGACATATAATGCTGTTGGCCTTGAGTCTGATAATCATAAATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGACATATAATGCTGTTGGCCTTGAGTCTGATAATCATAAATCAA  300

seq1  AAATATAGTTTGAATAAGGAGCCTTAAATAAAACACATGGAAGACAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAGTTTGAATAAGGAGCCTTAAATAAAACACATGGAAGACAGAGT  350

seq1  TATATATATATGGCTGGTTGACAAAAATGTTTTGATGAGATACAGGACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATGGCTGGTTGACAAAAATGTTTTGATGAGATACAGGACTT  400

seq1  GAACCCACATTCACAGAAGAAGCCATGGGCCATCTTTCACTATTTCAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCACATTCACAGAAGAAGCCATGGGCCATCTTTCACTATTTCAATG  450

seq1  TTTCCACTGACATAGTGGATTTATTAGTAATTATCATAAGCCATGAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACTGACATAGTGGATTTATTAGTAATTATCATAAGCCATGAGATG  500

seq1  AATGTTTCATATATTTGTACATGTACACAAATACAACTCTCATAGTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTCATATATTTGTACATGTACACAAATACAACTCTCATAGTTCTT  550

seq1  TATTTTTACTTTATGTGCATTGGTGTTTGCCTGCATGTATGTTTGTGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTACTTTATGTGCATTGGTGTTTGCCTGCATGTATGTTTGTGAAG  600

seq1  GTAGCAGATTTGGAATTGAAGACACAGACAATTGTGAGCTGTCATGTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGATTTGGAATTGAAGACACAGACAATTGTGAGCTGTCATGTGGG  650

seq1  TACTGGGAATTAAACCTGGGTCCTCTGGAAGAAAGCCAGTGCTCTTGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGAATTAAACCTGGGTCCTCTGGAAGAAAGCCAGTGCTCTTGACC  700

seq1  TCTGAGTCATCTCTTCAGTCCCCAACTCTGATTATTTTAATATATTATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTCATCTCTTCAGTCCCCAACTCTGATTATTTTAATATATTATTG  750

seq1  TATCGTGTATCTTACTATTCTTATATATAATATTCTTTGTACTATATGCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGTGTATCTTACTATTCTTATATATAATATTCTTTGTACTATATGCG  800

seq1  CTGTGTTCCAAGAAAGGACACATAATTACTAAGGACATTTTAAAAATATA  850
      ||||||||| |||||||||||||| |||||||||||||||| ||||||||
seq2  CTGTGTTCC-AGAAAGGACACATATTTACTAAGGACATTTT-AAAATATA  848

seq1  AAACAAGTGTAGACTGTGTTTTAAGGTATTCTAACCCATCAGTCTTGGGA  900
      |||| ||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAC-AGTGTAGACTGTGTTTTAAGGTATTCTAACCCATCAGTC-TGGGA  896

seq1  GAGGCTGAAAATCGAGGCTCTGTAAAACTTTCCTGGAATTATCTGATGAA  950
      || |||| ||||||||||| |   ||||||| |||| ||||||||||| |
seq2  GAAGCTG-AAATCGAGGCTTTTGTAAACTTTTCTGGGATTATCTGATG-A  944

seq1  GAGCTTTGTGAACCATGTCGGCATCTCCATCTTCATTCTAAACTTTAAGA  1000
      ||||||||||| | |||||||||||| |||||||||||| | |||  |||
seq2  GAGCTTTGTGATCAATGTCGGCATCTTCATCTTCATTCTGACCTT--AGA  992

seq1  CCATCCATGAAAGTCAAGAGTGCAAGCCACCTCAAATTCACCACTTAGAG  1050
      |||| ||||  |||| ||||  | |  | |||| ||||| |||||   ||
seq2  CCATTCATG-GAGTC-AGAGGTCGAAGCTCCTC-AATTC-CCACT---AG  1035

seq1  GAAAGGTGGTCATCTCACTT  1070
      |||    |||||||||||||
seq2  GAA---GGGTCATCTCACTT  1052