BAC Information

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BAC

Clone NameB6Ng01-143C04
Chromosome2 (Build37)
Map Location 142,708,479 - 142,737,634
singlet/doubletdoublet
Overlap geneKif16b
Upstream geneLOC668913, LOC668914
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143C04.bB6Ng01-143C04.g
ACCDH941152DH941153
length1,161982
definitionDH941152|Mus musculus domesticus DNA, BAC clone: B6Ng01-143C04, 5' end.DH941153|Mus musculus domesticus DNA, BAC clone: B6Ng01-143C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,708,479 - 142,709,674)(142,737,021 - 142,737,634)
sequence
gaattcaactaagctcaaatcagagacagccaagtagcacccagtgctcc
aggaaaggagtgaacactcttcctcctgactcaagagttcattttctaag
tcagcaggaagggcagccgatctgagttgttagtgatcagtgcacaaagc
acggtacactgtaaacaaggtcctctggggaaagtctgcctctggaacgt
tgttaagccccttcctcccagcactgggccactgaacatcagcctatctc
tgcagctcatcttcactagccacctattggcagagtaaggcttgccaatc
tcagtgctggagggaacacagaggtcacctaagttcaagccttttcctga
cactctagccttgtgatcaggcaagcagaaaactaactcagccagatggc
actggaatggcgggggccactgtgagcattgggaccatttctaacctgtt
cttagattatattccttggacctggcatggaagcaagcgttaaagttttg
agtaaaaataggaactgggacgattaacattcctaaaatttcagatgttg
gcaagaattatgcctaaaataagcagacagaggacagtgcaggatagcac
cttccttctccctctgctcctctacctagtctctctggctactcagctaa
cctgagctcctgagaacaggagtcaagtccactgtgttcacagtgcctaa
cgccatacactgtaccctgggggtgcccgaggggtgcttgctgagtggcc
ttcacacaccttcaccttgtcctcaaatctttgcacatcttttctaggtc
ccttagcagttccctagcagagctccaagtaaccattagacagcatttag
atcaggtattctctgttcacccttctacaatgaattcaaagcctaaatct
tgctgtgggttagttagttaaaccctgcatgtctgcacataccctacctc
actgcactcatccctttggctctctgtcactgcacgttcgaacgccctct
tctgcagccctgtcatctacgtcttgctagacagttccagaaagtctttc
cacctaccctgactcatcctcatcagtgcatcagtagtcgcagacacatg
gtatctaagtctgcttttcttgtttctttttctagcacctcatgccttcg
ttacatggtga
gaattcagaaatctgcctgcctctgcctcccaagtgctgggattaaaggc
gtgcgccaccactgcccagctaacatcgatacactttatgaacatgttca
ccttcaaaaatgtgtgcccatctctaataaaaatggctctaaaaattagc
gtgtcaaatgctggcgagaatgtggcaaaattgagctgtgtgtggcagtg
cacacctataacctcaatactggggaggcctaggcaggaagatcataaac
ttgaggccagctagactaaatagcaagtctctgaacaacagatgtcctga
ggatgtagcttgatggtagagcacttacctagcaaagcactaggtctatg
cctagtaccaaaactgcaacataagcttacatatgcacgtgtgcacacac
acacacacacacacgcctgtgcctgcatgtacttttaatctaaaacactc
atacatggttgagaggattacaaaatggtcaaaatgatacactctaatct
gtagaatgattttgcttataagaaacagttaaacatacatttagcataga
ttgagaatgctacttcctaggattttaatactttaggctcccacaaaacc
cagtgtgtgaccatttataatggctttattcataattgctcagaactgga
aataaaccaaatgtcctctgactggtgagctactaaacagactgtggtat
aattaaattcagtaacagaaggagccacgggtatatcaaacaatacggat
gcatttcaaatgcattatgcaaagccaaactccaaaaaggcatgcattct
atgattcaatttacaagttattctagaaaaaaaaaagtgaaccatgggaa
cacagaaaacagattgttgattgctagggagttggattagagggaaggct
ctacaaaggacctagggggattttggcgggtgacagtatctttatatagc
ttgatctttagagccatgccaccatctgcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142708479_142709674
seq2: B6Ng01-143C04.b_49_1209

seq1  GAATTCAACTAAGCTCAAATCAGAGACAGCCAAGTAGCACCCAGTGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTAAGCTCAAATCAGAGACAGCCAAGTAGCACCCAGTGCTCC  50

seq1  AGGAAAGGAGTGAACACTCTTCCTCCTGACTCAAGAGTTCATTTTCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGAGTGAACACTCTTCCTCCTGACTCAAGAGTTCATTTTCTAAG  100

seq1  TCAGCAGGAAGGGCAGCCGATCTGAGTTGTTAGTGATCAGTGCACAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGGAAGGGCAGCCGATCTGAGTTGTTAGTGATCAGTGCACAAAGC  150

seq1  ACGGTACACTGTAAACAAGGTCCTCTGGGGAAAGTCTGCCTCTGGAACGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTACACTGTAAACAAGGTCCTCTGGGGAAAGTCTGCCTCTGGAACGT  200

seq1  TGTTAAGCCCCTTCCTCCCAGCACTGGGCCACTGAACATCAGCCTATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGCCCCTTCCTCCCAGCACTGGGCCACTGAACATCAGCCTATCTC  250

seq1  TGCAGCTCATCTTCACTAGCCACCTATTGGCAGAGTAAGGCTTGCCAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTCATCTTCACTAGCCACCTATTGGCAGAGTAAGGCTTGCCAATC  300

seq1  TCAGTGCTGGAGGGAACACAGAGGTCACCTAAGTTCAAGCCTTTTCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTGGAGGGAACACAGAGGTCACCTAAGTTCAAGCCTTTTCCTGA  350

seq1  CACTCTAGCCTTGTGATCAGGCAAGCAGAAAACTAACTCAGCCAGATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTAGCCTTGTGATCAGGCAAGCAGAAAACTAACTCAGCCAGATGGC  400

seq1  ACTGGAATGGCGGGGGCCACTGTGAGCATTGGGACCATTTCTAACCTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAATGGCGGGGGCCACTGTGAGCATTGGGACCATTTCTAACCTGTT  450

seq1  CTTAGATTATATTCCTTGGACCTGGCATGGAAGCAAGCGTTAAAGTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATTATATTCCTTGGACCTGGCATGGAAGCAAGCGTTAAAGTTTTG  500

seq1  AGTAAAAATAGGAACTGGGACGATTAACATTCCTAAAATTTCAGATGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAATAGGAACTGGGACGATTAACATTCCTAAAATTTCAGATGTTG  550

seq1  GCAAGAATTATGCCTAAAATAAGCAGACAGAGGACAGTGCAGGATAGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAATTATGCCTAAAATAAGCAGACAGAGGACAGTGCAGGATAGCAC  600

seq1  CTTCCTTCTCCCTCTGCTCCTCTACCTAGTCTCTCTGGCTACTCAGCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCTCCCTCTGCTCCTCTACCTAGTCTCTCTGGCTACTCAGCTAA  650

seq1  CCTGAGCTCCTGAGAACAGGAGTCAAGTCCACTGTGTTCACAGTGCCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTCCTGAGAACAGGAGTCAAGTCCACTGTGTTCACAGTGCCTAA  700

seq1  CGCCATACACTGTACCCTGGGGGTGCCCGAGGGGTGCTTGCTGAGTGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCATACACTGTACCCTGGGGGTGCCCGAGGGGTGCTTGCTGAGTGGCC  750

seq1  TTCACACACCTTCACCTTGTCCTCAAATCTTTGCACATCTTTTCTAGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACACCTTCACCTTGTCCTCAAATCTTTGCACATCTTTTCTAGGTC  800

seq1  CCTTAGCAGTTCCCTAGCAGAGCTCCAAGTAACCATTAGACAGCATTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCAGTTCCCTAGCAGAGCTCCAAGTAACCATTAGACAGCATTTAG  850

seq1  ATCAGGTATTCTCTGTTCACCCTTCTACAATGAATTCAAAGCCTAAAATC  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATCAGGTATTCTCTGTTCACCCTTCTACAATGAATTCAAAGCCT-AAATC  899

seq1  TTGCTGTGGGTTAGTTAGTTAGACCCTGCATGTCTGCACATACCCTACCT  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGCTGTGGGTTAGTTAGTTAAACCCTGCATGTCTGCACATACCCTACCT  949

seq1  CACTGCACTCATCCCTTTGGCCTCCTCTGTCCACTGCCACGTTCCGAACG  1000
      |||||||||||||||||||||   |||||| ||||| |||||| ||||||
seq2  CACTGCACTCATCCCTTTGGC--TCTCTGT-CACTG-CACGTT-CGAACG  994

seq1  CCCTCCTTCTGCAAGCCCTGTTCATTCTACGTCTGCCTAGACAGTTTTCC  1050
      |||| ||||||| ||||||| ||| |||||||||  ||||||||||    
seq2  CCCT-CTTCTGC-AGCCCTG-TCA-TCTACGTCTTGCTAGACAGTT----  1036

seq1  CCAGATAGTCTTTCAACTTACCCTGACCTTCCATCCCTCATCAGTGCAAT  1100
      ||||| |||||||| || |||||||||    ||| |||||||||||| ||
seq2  CCAGAAAGTCTTTCCACCTACCCTGAC---TCAT-CCTCATCAGTGC-AT  1081

seq1  CAGTAGTTCGCAGACAACCATGGTTATCTATAGTTCTTGCCTTTTTCTGT  1150
      |||||| |||||||||  ||||| |||||| |||   |||  |||||| |
seq2  CAGTAG-TCGCAGACA--CATGG-TATCTA-AGT--CTGC--TTTTCT-T  1121

seq1  GTTTTCCTTTTTTCTAGCACTCTCACTGCCTGTCGTTACATGGTGA  1196
      ||||    |||||||||||| |||| ||||| ||||||||||||||
seq2  GTTT---CTTTTTCTAGCAC-CTCA-TGCCT-TCGTTACATGGTGA  1161

seq1: chr2_142737021_142737634
seq2: B6Ng01-143C04.g_66_679 (reverse)

seq1  ATGGTCACACACTGGGTTTTGTGGGAGCCTAAAGTATTAAAATCCTAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCACACACTGGGTTTTGTGGGAGCCTAAAGTATTAAAATCCTAGGA  50

seq1  AGTAGCATTCTCAATCTATGCTAAATGTATGTTTAACTGTTTCTTATAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCATTCTCAATCTATGCTAAATGTATGTTTAACTGTTTCTTATAAG  100

seq1  CAAAATCATTCTACAGATTAGAGTGTATCATTTTGACCATTTTGTAATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCATTCTACAGATTAGAGTGTATCATTTTGACCATTTTGTAATCC  150

seq1  TCTCAACCATGTATGAGTGTTTTAGATTAAAAGTACATGCAGGCACAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACCATGTATGAGTGTTTTAGATTAAAAGTACATGCAGGCACAGGC  200

seq1  GTGTGTGTGTGTGTGTGTGTGCACACGTGCATATGTAAGCTTATGTTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGCACACGTGCATATGTAAGCTTATGTTGCA  250

seq1  GTTTTGGTACTAGGCATAGACCTAGTGCTTTGCTAGGTAAGTGCTCTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGTACTAGGCATAGACCTAGTGCTTTGCTAGGTAAGTGCTCTACC  300

seq1  ATCAAGCTACATCCTCAGGACATCTGTTGTTCAGAGACTTGCTATTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCTACATCCTCAGGACATCTGTTGTTCAGAGACTTGCTATTTAGT  350

seq1  CTAGCTGGCCTCAAGTTTATGATCTTCCTGCCTAGGCCTCCCCAGTATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGGCCTCAAGTTTATGATCTTCCTGCCTAGGCCTCCCCAGTATTG  400

seq1  AGGTTATAGGTGTGCACTGCCACACACAGCTCAATTTTGCCACATTCTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATAGGTGTGCACTGCCACACACAGCTCAATTTTGCCACATTCTCG  450

seq1  CCAGCATTTGACACGCTAATTTTTAGAGCCATTTTTATTAGAGATGGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATTTGACACGCTAATTTTTAGAGCCATTTTTATTAGAGATGGGCA  500

seq1  CACATTTTTGAAGGTGAACATGTTCATAAAGTGTATCGATGTTAGCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTTGAAGGTGAACATGTTCATAAAGTGTATCGATGTTAGCTGGG  550

seq1  CAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGC  600

seq1  AGATTTCTGAATTC  614
      ||||||||||||||
seq2  AGATTTCTGAATTC  614