BAC Information

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BAC

Clone NameB6Ng01-143I20
Chromosome2 (Build37)
Map Location 88,518,059 - 88,624,766
singlet/doubletdoublet
Overlap geneOlfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200
Upstream geneOlfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1
Downstream geneOlfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143I20.bB6Ng01-143I20.g
ACCDH941459DH941460
length1,0641,051
definitionDH941459|Mus musculus domesticus DNA, BAC clone: B6Ng01-143I20, 5' end.DH941460|Mus musculus domesticus DNA, BAC clone: B6Ng01-143I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,518,059 - 88,519,140)(88,623,701 - 88,624,766)
sequence
gaattcattttcttgggtctttctcagaaccctgaggttgaaaaagtgtg
ctttgtggtgttctccttcttttacatggtcattctgctaggaaacctcc
tcatcatgttgacagtttgcagtggcaatcttttcaagtttcccatgtat
tttttcctcaactttctgtcttttgtggacatttgctactcctcagtcac
agcacccaagatgattattgacctgttagtgaagaaaaagactatatcct
atgtggggtgcatgttacaactctttgtggttcatttctttggttgcact
gagatcttcattcttactgtcatggcctatgatagatatgtggccatttg
taaacctctccactatatgactatgatggaccgggaaagatgcaataaga
tgttgctcggaacatggatcggtggcttcttacattctattatccaagtg
gctcttgtggtccagctccccttttgtggaccgaatgagattgatcacta
tttctgtgatgtacatcctgtactgaaacttgcctgcactgacacttaca
ttgttggtatttttgtgacagcaaacagtggcaccattgcattgggaagt
tttgtcatcttgctgatctcatacacagtcattctcatgtctctgagaaa
gcagtcatctgaaggcagacgcaaagctctctccacttgtggatcccaca
ttgctgttgtcatcattttttttggcccctgtacttttatgtatatgcgg
cctgacactaccttctctgaggacaagatggtagctatattttacaccat
tatcactcccatgctgaatcctctaatttacactctaagaaatgcagaag
taaagaatgcaatgagaaaactgtgggctagaaagttttcctggaaacta
ctggaaatagcagaaaaattctttagccttgactaatgccatgttgagaa
taataacaatagcggatcaaagaaaaataatggggcatgtactaccacag
agtaggataataatcatgacaatataataatagttatgttcagtatttct
gaaattgatgacaa
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatccgatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgagggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgattcttgatcttacagcacaagccattgctgtt
ctattcagaaatttttcccctgtacccatatcttcgaggcttttccctac
tttttcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagttcaaggagatagaaatggatcaattcgc
attcttctacatgataaccgccagtgtgtcagcaccatttgttgaaaatg
ctgtcttttttccactggattgttttagctcccttgtcaaagatcaagtg
accatatcttttcatataagaaaatttagatgagatatattcatcatatg
ttttaaggcctctgttacaaaattatcctctttaactcataactatatat
aattttaagtaattataaaatacaagatgtttatcagaataaagaaaaat
gagatgaatatttgataatacaagatgtttatcagaataaggaaaaatga
gatgaatatttgatatataccttatttcatatgttgataaatacaggagc
ttaaatagttgtaagatgaactaagaattcataaatttctaatagacatt
gaataaagtcacttctaattttattctcactggaatatagaaatcccttc
tacttgcccagaatcactttgtgtgtttgaaattaatttacaaaaatatg
agactatatttcctctgcataccagaggatatttgactctatgataatat
atgcaggagtctagagaaatatatgtatgctcatcctctcattggggtcc
taccctttcgagtgaaggaataaaaagactctgtatggggatggcagcat
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_88518059_88519140
seq2: B6Ng01-143I20.b_45_1108

seq1  GAATTCATTTTCTTGGGTCTTTCTCAGAACCCTGAGGTTGAAAAAGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTCTTGGGTCTTTCTCAGAACCCTGAGGTTGAAAAAGTGTG  50

seq1  CTTTGTGGTGTTCTCCTTCTTTTACATGGTCATTCTGCTAGGAAACCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGGTGTTCTCCTTCTTTTACATGGTCATTCTGCTAGGAAACCTCC  100

seq1  TCATCATGTTGACAGTTTGCAGTGGCAATCTTTTCAAGTTTCCCATGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATGTTGACAGTTTGCAGTGGCAATCTTTTCAAGTTTCCCATGTAT  150

seq1  TTTTTCCTCAACTTTCTGTCTTTTGTGGACATTTGCTACTCCTCAGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTCAACTTTCTGTCTTTTGTGGACATTTGCTACTCCTCAGTCAC  200

seq1  AGCACCCAAGATGATTATTGACCTGTTAGTGAAGAAAAAGACTATATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCAAGATGATTATTGACCTGTTAGTGAAGAAAAAGACTATATCCT  250

seq1  ATGTGGGGTGCATGTTACAACTCTTTGTGGTTCATTTCTTTGGTTGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGGTGCATGTTACAACTCTTTGTGGTTCATTTCTTTGGTTGCACT  300

seq1  GAGATCTTCATTCTTACTGTCATGGCCTATGATAGATATGTGGCCATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTTCATTCTTACTGTCATGGCCTATGATAGATATGTGGCCATTTG  350

seq1  TAAACCTCTCCACTATATGACTATGATGGACCGGGAAAGATGCAATAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTCTCCACTATATGACTATGATGGACCGGGAAAGATGCAATAAGA  400

seq1  TGTTGCTCGGAACATGGATCGGTGGCTTCTTACATTCTATTATCCAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTCGGAACATGGATCGGTGGCTTCTTACATTCTATTATCCAAGTG  450

seq1  GCTCTTGTGGTCCAGCTCCCCTTTTGTGGACCGAATGAGATTGATCACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGTGGTCCAGCTCCCCTTTTGTGGACCGAATGAGATTGATCACTA  500

seq1  TTTCTGTGATGTACATCCTGTACTGAAACTTGCCTGCACTGACACTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGATGTACATCCTGTACTGAAACTTGCCTGCACTGACACTTACA  550

seq1  TTGTTGGTATTTTTGTGACAGCAAACAGTGGCACCATTGCATTGGGAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGTATTTTTGTGACAGCAAACAGTGGCACCATTGCATTGGGAAGT  600

seq1  TTTGTCATCTTGCTGATCTCATACACAGTCATTCTCATGTCTCTGAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATCTTGCTGATCTCATACACAGTCATTCTCATGTCTCTGAGAAA  650

seq1  GCAGTCATCTGAAGGCAGACGCAAAGCTCTCTCCACTTGTGGATCCCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCATCTGAAGGCAGACGCAAAGCTCTCTCCACTTGTGGATCCCACA  700

seq1  TTGCTGTTGTCATCATTTTTTTTGGCCCCTGTACTTTTATGTATATGCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTTGTCATCATTTTTTTTGGCCCCTGTACTTTTATGTATATGCGG  750

seq1  CCTGACACTACCTTCTCTGAGGACAAGATGGTAGCTATATTTTACACCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACACTACCTTCTCTGAGGACAAGATGGTAGCTATATTTTACACCAT  800

seq1  TATCACTCCCATGCTGAATCCTCTAATTTACACTCTAAGAAATGCAGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTCCCATGCTGAATCCTCTAATTTACACTCTAAGAAATGCAGAAG  850

seq1  TAAAGAATGCAATGAGAAAACTGTGGGCTAGAAAGTTTTCCTGGGAAACT  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAAAGAATGCAATGAGAAAACTGTGGGCTAGAAAGTTTTCCT-GGAAACT  899

seq1  ACTGGGAAATAGCAGAAAAAATTCTTTAGCCTTGACTAATGCCATTGTTT  950
      ||| ||||||||||| |||||||||||||||||||||||||||| |||| 
seq2  ACT-GGAAATAGCAG-AAAAATTCTTTAGCCTTGACTAATGCCA-TGTT-  945

seq1  GGAGAAATAATAACAATAGCGGATTCAAAAGAAAAATAATGGGGCAATGT  1000
       ||| |||||||||||||||||||   |||||||||||||||||| ||||
seq2  -GAG-AATAATAACAATAGCGGAT--CAAAGAAAAATAATGGGGC-ATGT  990

seq1  ACTA-CACAGAAGTAAGGTATAATAATCATGACAATATAATAATAGTTTA  1049
      |||| ||||| ||||  | ||||||||||||||||||||||||||| |||
seq2  ACTACCACAG-AGTA--GGATAATAATCATGACAATATAATAATAG-TTA  1036

seq1  TGGTCCAGTAATTTTCTGAAATTTGAATGACAA  1082
      | || |||||  |||||||||||   |||||||
seq2  T-GTTCAGTA--TTTCTGAAATT--GATGACAA  1064

seq1: chr2_88623701_88624766
seq2: B6Ng01-143I20.g_85_1118 (reverse)

seq1  AATGCTGCCTTCCCCACTTACAGAGTCTCTTTTCTATTCCCTTTTCCCAC  50
      ||||||||| ||||||  |||||||||   ||| |||||| |     |||
seq2  AATGCTGCCATCCCCA--TACAGAGTC---TTTTTATTCCTT-----CAC  40

seq1  TTCTGAAAGGGTAGGACCCCAAATTGAGAGGATGGGGCATTACAATATAA  100
      |   ||||||||||||||||||  ||||||||| | ||| ||| ||||| 
seq2  T--CGAAAGGGTAGGACCCCAA--TGAGAGGAT-GAGCA-TAC-ATATA-  82

seq1  TTTTCTCTAGACTCCTGCATATATTATCATTAGAGTCAAATATTCCTTCT  150
       |||||||||||||||||||||||||||| |||||||||||||  | |||
seq2  -TTTCTCTAGACTCCTGCATATATTATCA-TAGAGTCAAATAT--CCTCT  128

seq1  GGTAATGCAGAGGGAAATATTAGTCTCAATATTTTTTGTTAAAATTAATT  200
      ||| ||||||| ||||||| ||||||| ||| |||||||  |||||||||
seq2  GGT-ATGCAGA-GGAAATA-TAGTCTC-ATA-TTTTTGT--AAATTAATT  171

seq1  TCAAAACACACAAAGTGATTCTGGGCAAGTAGAAGGGATTTCCTAATATT  250
      || |||||||||||||||||||||||||||||||||||||||   |||||
seq2  TC-AAACACACAAAGTGATTCTGGGCAAGTAGAAGGGATTTC--TATATT  218

seq1  CCAGTGAGAATAAAATTAGAAGTGACTTTATTCAATGTCTATTAGAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAGAATAAAATTAGAAGTGACTTTATTCAATGTCTATTAGAAATT  268

seq1  TATGAATTCTTAGTTCATCTTACAACTATTTAAGCTCCTGTATTTATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTCTTAGTTCATCTTACAACTATTTAAGCTCCTGTATTTATCAA  318

seq1  CATATGAAATAAGGTATATATCAAATATTCATCTCATTTTTCCTTATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAAATAAGGTATATATCAAATATTCATCTCATTTTTCCTTATTCT  368

seq1  GATAAACATCTTGTATTATCAAATATTCATCTCATTTTTCTTTATTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACATCTTGTATTATCAAATATTCATCTCATTTTTCTTTATTCTGA  418

seq1  TAAACATCTTGTATTTTATAATTACTTAAAATTATATATAGTTATGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATCTTGTATTTTATAATTACTTAAAATTATATATAGTTATGAGTT  468

seq1  AAAGAGGATAATTTTGTAACAGAGGCCTTAAAACATATGATGAATATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGATAATTTTGTAACAGAGGCCTTAAAACATATGATGAATATATC  518

seq1  TCATCTAAATTTTCTTATATGAAAAGATATGGTCACTTGATCTTTGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTAAATTTTCTTATATGAAAAGATATGGTCACTTGATCTTTGACAA  568

seq1  GGGAGCTAAAACAATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTAAAACAATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGT  618

seq1  GCTGACACACTGGCGGTTATCATGTAGAAGAATGCGAATTGATCCATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACACACTGGCGGTTATCATGTAGAAGAATGCGAATTGATCCATTTC  668

seq1  TATCTCCTTGAACTAAGGTCAAATCTAAGTGGATTAAGGAACTCCACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCTTGAACTAAGGTCAAATCTAAGTGGATTAAGGAACTCCACATA  718

seq1  AAACCAGAGACACTGAAACTTATAGAGGAAAAAGTAGGGAAAAGCCTCGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGAGACACTGAAACTTATAGAGGAAAAAGTAGGGAAAAGCCTCGA  768

seq1  AGATATGGGTACAGGGGAAAAATTTCTGAATAGAACAGCAATGGCTTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGGGTACAGGGGAAAAATTTCTGAATAGAACAGCAATGGCTTGTG  818

seq1  CTGTAAGATCAAGAATCGATAAATGGGACCTCATAAAATTGCAAAGCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGATCAAGAATCGATAAATGGGACCTCATAAAATTGCAAAGCTTC  868

seq1  TGCAAAGCAAAAGACACCCTCAATAAGACAAAAAGGCCACCAACAGATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGCAAAAGACACCCTCAATAAGACAAAAAGGCCACCAACAGATTG  918

seq1  GGAAAGGATCTTTACCTATCCCAAATCGGATAGGGGACTAATATCCAATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGATCTTTACCTATCCCAAATCGGATAGGGGACTAATATCCAATA  968

seq1  TATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATT  1018

seq1  AAAAAATGGGGCTCAG  1066
      ||||||||||||||||
seq2  AAAAAATGGGGCTCAG  1034