BAC Information

Click to search

BAC

Clone NameB6Ng01-144L15
Chromosome2 (Build37)12 (Build37)
Map Location 89,909,834 - 89,911,04869,054,185 - 69,054,450
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOlfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1
Downstream geneOlfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144L15.bB6Ng01-144L15.g
ACCDH942327DH942328
length1,173958
definitionDH942327|Mus musculus domesticus DNA, BAC clone: B6Ng01-144L15, 5' end.DH942328|Mus musculus domesticus DNA, BAC clone: B6Ng01-144L15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,909,834 - 89,911,048)(69,054,185 - 69,054,450)
sequence
gaattccataattaaatcagcagatgagttaaacatggacaacaatgatg
aaattatggagtctacataattttaattctaaattattaaacttaaagtt
ttaataataaagtacatattcttttcagacagtaaactacctagaaattt
ctagaaattgaacttactaaaagttcaaatggagataaacatagaatctt
aaattaaacttatctaataaacaactcccttgaaaaccttacagatcatc
aatatgatcccagcacctactttgtgatgtcttgtgtgacatttcctatc
taacaacctaatgtgctgagcagttttaaaagatgacattgactcagctg
ccctgacccactgttccctctctcctagtttttccccaaagatatatcac
aggaaggttagataaatcagacacatgagcctcttcccccactatctttt
actcagtaattataagctattgttttggaaggacattcttggttttctca
ttctactgagagaaattccgggacaaggaatctcatggtgaatgacatag
aacttggatgaaacgaggtatcacaccttctgctcaagagtatgtcattc
acccacacctcctctggtgctgacccaaatctggctccattctggaggct
gaccagaaagaaagacaagaaccatttctgggggaaagaaaagcaaatcc
aagagaaaagaaaaatttttaaataacagcaataagaaaactaacaatga
ctgtgatccaattccagtggaccacttgacagtgttataatgcctactaa
ggcagcttgtctccacagcttagcagtcctatcagagaaagtatattatg
gagtcaaataagcttatttctagaggaaaagaatcaccttcataagattt
gctttggggaccacagagcttatcattagcacttagccaccagagtagct
aaaacttacatgtttgatataatcctccagttcacagcaaactatagctt
ttgaagcacttagagatgcttatatctctgtagactctacacagatttga
gaacagtatataatagtagtagctgcatgatcctggtcctgtctttacta
aaatttagagcatgtcacaatgaagatcttgactgtgacaaggctggata
catatctaatgtacacccaggag
gaattctagaaagtctttaatttctttcttgactaggtgatcattgagta
gagagttattcagtttctatgagtacgtgggctttctgttgtttctgtgg
ctgttgaagtccagtcttaatctgcgatgatctgatagaatgcaaggagt
tacttcagtcttcttgtatctgttgaggtttgctttgtgtcccattctgt
ggtttgtttggagaaagcctccatgaggtgcggagaagaaggtatattct
tttgtttttaatgaaagattctgttgatatctgttaaattcatatgtttc
ataacatctgttagtttcatcatttcttcatttagtttctgttcctatga
cttgttcattgatgagagtcaggttttcttatatggtgttgaagatgttt
tctggccctttgaaccgagaatcttcatcctcttctattcctattatttt
taggtttggtcttttcatagtgacccaaatttcctgggtgctttaggtta
ggaacattttacatttggcattttatttgaccaatatgttcatttcttct
atggtatcttctatgtctgaaattctctcttccatttcttgtattctgtt
ggtgatgtttgcatctgtacttcctgttccttttcctaggttttccatct
ccagggttgcctcaatttatgctttctttaatgcttctgtttccattttt
agatttggaccatttcattcatttcttttgcctgattatattgtcctata
tttcttcaaaagatttatttgtttcctcttgaagggcttctacctgcttg
cttgtgttttcctgtatttctataaggaaactatatcctctttaaaggcc
tctatcatcttcatgagatgggatttaaggtcacagttttgctcttcagt
ttgttataatatccagggcttgctgtagtagagagctgggttctgatgtg
ccatattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_89909834_89911048
seq2: B6Ng01-144L15.b_48_1220

seq1  GAATTCCATAATTAAATCAGCAGATGAGTTAAACATGGACAACAATGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAATTAAATCAGCAGATGAGTTAAACATGGACAACAATGATG  50

seq1  AAATTATGGAGTCTACATAATTTTAATTCTAAATTATTAAACTTAAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGGAGTCTACATAATTTTAATTCTAAATTATTAAACTTAAAGTT  100

seq1  TTAATAATAAAGTACATATTCTTTTCAGACAGTAAACTACCTAGAAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATAAAGTACATATTCTTTTCAGACAGTAAACTACCTAGAAATTT  150

seq1  CTAGAAATTGAACTTACTAAAAGTTCAAATGGAGATAAACATAGAATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAATTGAACTTACTAAAAGTTCAAATGGAGATAAACATAGAATCTT  200

seq1  AAATTAAACTTATCTAATAAACAACTCCCTTGAAAACCTTACAGATCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAACTTATCTAATAAACAACTCCCTTGAAAACCTTACAGATCATC  250

seq1  AATATGATCCCAGCACCTACTTTGTGATGTCTTGTGTGACATTTCCTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATCCCAGCACCTACTTTGTGATGTCTTGTGTGACATTTCCTATC  300

seq1  TAACAACCTAATGTGCTGAGCAGTTTTAAAAGATGACATTGACTCAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACCTAATGTGCTGAGCAGTTTTAAAAGATGACATTGACTCAGCTG  350

seq1  CCCTGACCCACTGTTCCCTCTCTCCTAGTTTTTCCCCAAAGATATATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACCCACTGTTCCCTCTCTCCTAGTTTTTCCCCAAAGATATATCAC  400

seq1  AGGAAGGTTAGATAAATCAGACACATGAGCCTCTTCCCCCACTATCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGTTAGATAAATCAGACACATGAGCCTCTTCCCCCACTATCTTTT  450

seq1  ACTCAGTAATTATAAGCTATTGTTTTGGAAGGACATTCTTGGTTTTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTAATTATAAGCTATTGTTTTGGAAGGACATTCTTGGTTTTCTCA  500

seq1  TTCTACTGAGAGAAATTCCGGGACAAGGAATCTCATGGTGAATGACATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTGAGAGAAATTCCGGGACAAGGAATCTCATGGTGAATGACATAG  550

seq1  AACTTGGATGAAACGAGGTATCACACCTTCTGCTCAAGAGTATGTCATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGATGAAACGAGGTATCACACCTTCTGCTCAAGAGTATGTCATTC  600

seq1  ACCCACACCTCCTCTGGTGCTGACCCAAATCTGGCTCCATTCTGGAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACCTCCTCTGGTGCTGACCCAAATCTGGCTCCATTCTGGAGGCT  650

seq1  GACCAGAAAGAAAGACAAGAACCATTTCTGGGGGAAAGAAAAGCAAATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAAAGAAAGACAAGAACCATTTCTGGGGGAAAGAAAAGCAAATCC  700

seq1  AAGAGAAAAGAAAAATTTTTAAATAACAGCAATAAGAAAACTAACAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAAGAAAAATTTTTAAATAACAGCAATAAGAAAACTAACAATGA  750

seq1  CTGTGATCCAATTCCAGTGGACCACTTGACAGTGTTATAATGCCTACTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATCCAATTCCAGTGGACCACTTGACAGTGTTATAATGCCTACTAA  800

seq1  GGCAGCTTGTCTCCACAGCTTAGCAGTCCTATCAGAGAAAGTATATTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTTGTCTCCACAGCTTAGCAGTCCTATCAGAGAAAGTATATTATG  850

seq1  GAGTCAAATAAGCTTATTTCTAGAGGAAAAGAATCACCTTCATAAGATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAATAAGCTTATTTCTAGAGGAAAAGAATCACCTTCATAAGATTT  900

seq1  GCTTTGGGGACCACAGAGCTTATCATTAGCACTTAGCCACCAAGAGTAAG  950
      ||||||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  GCTTTGGGGACCACAGAGCTTATCATTAGCACTTAGCCACC-AGAGT-AG  948

seq1  CTAAAACTTACATGTTTGATATAAATCCTCCAGGTTCACCAGCAAAACTA  1000
      |||||||||||||||||||||| ||||||||| ||||| |||| ||||||
seq2  CTAAAACTTACATGTTTGATAT-AATCCTCCA-GTTCA-CAGC-AAACTA  994

seq1  TAAGCTTTTGAAAGCACTTAGAGAATGGCTTATATCCTCTGTAGAACTCT  1050
      | |||||||| |||||||||||||   |||||||| |||||||| |||||
seq2  T-AGCTTTTG-AAGCACTTAGAGA--TGCTTATAT-CTCTGTAG-ACTCT  1038

seq1  ACACAGATTTGAGAACAGTATATAATAGTAAGTAGCTTGGTATGATCCCT  1100
      ||||||||||||||||||||||||||||| |||||||  | ||||| |||
seq2  ACACAGATTTGAGAACAGTATATAATAGT-AGTAGCT--GCATGAT-CCT  1084

seq1  GAGTCCTCTGTCTATTACTAAATATTTTTAGGAAGCCATGTCAACAATGA  1150
      | |||  |||||| |||||||| ||||  ||     |||||| |||||||
seq2  G-GTC--CTGTCT-TTACTAAA-ATTTAGAG-----CATGTC-ACAATGA  1123

seq1  AGAAATTCTTGAAACTTGTGACCAGAGGCTTGGAGTACATAATCATAAAA  1200
      |||   ||||||    ||||||   |||| |||| |||||    ||  ||
seq2  AGA---TCTTGA---CTGTGAC--AAGGC-TGGA-TACAT----ATCTAA  1159

seq1  TGTACACCCCAGGAG  1215
      |||||| ||||||||
seq2  TGTACA-CCCAGGAG  1173

seq1: chr12_69054185_69054450
seq2: B6Ng01-144L15.g_72_325 (reverse)

seq1  AAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGG-GACCTTCTCCA  49
      |||||||||| ||||||||||||||| |||||||| || | | |||||| 
seq2  AAAACAAAAGAATATACCTTCTTCTCCGCACCTCATGGAGGCTTTCTCC-  49

seq1  AAATTGACCATATAATTGGTCACAAAACAGGCCTCAAAAGATACAAAAAT  99
      |||   |||| | ||| || |||||| ||  |||||| |||||||| || 
seq2  AAACAAACCACAGAATGGGACACAAAGCAAACCTCAACAGATACAAGAAG  99

seq1  ATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGAT  149
      | |||| |    || || || |||||||| || |   |  ||||||||  
seq2  ACTGAAGTAACTCCTTGCATTCTATCAGATCATCGCAGATTAAGACTGGA  149

seq1  CTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGA  199
      |||||| | | ||| ||| ||  ||||||| || | | | | ||||||||
seq2  CTTCAACAGCCACAGAAACAACAGAAAGCCCACGTACTCATAGAAACTGA  199

seq1  ATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAA  249
      ||||| |||| |||||||||  | | |||            |||||||||
seq2  ATAACTCTCTACTCAATGATCACCTAGTC------------AAGAAAGAA  237

seq1  ATTAAAGACTTTTTAGA  266
      |||||||||||| ||||
seq2  ATTAAAGACTTTCTAGA  254