BAC Information

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BAC

Clone NameB6Ng01-145I05
Chromosome2 (Build37)
Map Location 44,521,647 - 44,522,792
singlet/doubletsinglet
Overlap geneGtdc1
Upstream geneKynu, Arhgap15
Downstream geneZeb2, LOC100042661
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145I05.bB6Ng01-145I05.g
ACCDH942897DH942898
length1,1271,222
definitionDH942897|Mus musculus domesticus DNA, BAC clone: B6Ng01-145I05, 5' end.DH942898|Mus musculus domesticus DNA, BAC clone: B6Ng01-145I05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactggcatgcattcctttgatgtaggtagtagacagagaagagt
gcccatcactaacaaacaagtgtcctggacctccaagcaggggaaaaagg
aaaaccttttgtagtctttttgttgttgtttgttctgttttagacatggc
ttagatcaggtgaaataaagtaagagttttgagctcaggtcagcacatgc
agaagcaaatactaaacgctctggaggcttccgtttctttaagtcccagc
tgagaggccccagctaagaggcttgcttctatttgaacggtccaggaagt
gttgcccagtgttacactgctttgcgaaggcaaacacatgagaattaaat
ctgaacatttctgttctgaatgtcaaaaagcaaatttttaaatccaaaat
acacctttggctgtcttcttttagggaggatatttaaagtaaaaccaatg
tgctttggagcaaagggaacttactacttaaatcacctgttgctgttaga
aattgagagtaaatatttgactttattactctaaatggagtcacgtgttt
caaaaagtagagtcgacttttagcaggtcagccatatctctttggaagta
tataaggagctccaatgacattttatcaagaggtttgcagtatgcacatt
ttaaaactttcatccccctgggtccctttttaaaagacactgtaaattac
aagaaacttaagaaagccaagactgtcagcatgctggagatagttggtag
tgcttccttcatggccctggtgcttcatggcctctgttaaacccctactt
ccataattagaattggaggagtgacttgaacagacatcaagaaactgatt
gtcagagtgtcgaataactaaaacagagacaattagaaatcgggatagta
cacagaaaggacacagtccctaaggtaaccagatcagagggaggaatggg
ggactgtggaccagttttagaggtttcagctgaggagactgacagtggct
aggtaaatcacatgcatggctctgtggaagaaagctttttcataacaggg
ctcaggaaccaaacgggggtcgggtgggggcaggtcttgtccagttgtct
tagaacctgggctcactaatgcagctc
gaattctttgtttagctctgtaccccatttttcaatagggttatttggtt
ttctggagtccaacttcttgagtttttttatatatactggatattagtcc
ccatcagatttaggattggtaaagttatttttccaatctgttggtggccc
ttttgtcttattgatggtgtcttttgccttacagaagttttgcaatttta
tgaggtcccatttgtcaattcttgatcttacagcacaagccattgctgtt
ctgttaagaaaattttccctatgcccatgtgctcaatctctccctcactt
tctcctctataagtttcactgtttctggttttatatagaggtccttgatc
catttagacttgagctttgcacaaggagataagaatggatcaattgtcat
ccttctacatgctaaccaccagttgagctagcaccatttgttgaaaattc
ttttttccactggatggttttagctcctttgtcaaagatcaggtgaccat
aggtgtgtgggttcatttctgggtcttcagttccattgatctacctgtct
gtcactgtaccagtatcaagcagtttttatcataattgctctgcagtaca
gcttgaggccagggatatccctcaacagaggaatggaaacagaaaatgtg
gtacaatttcacatggagtactattcagctattaaaaacaatgaattcac
gaaattcttggacaaatggatggatctggagaatatcttcttgagtgagg
taacccaatcacaaaagtgcacacaagatatgcagtctctgataagtgga
tattagcccagaagttcaaacctaagatacaatttgcaaaacacatgaaa
ctcaagaagaaggaagaccaatgtgtggctacctcgatccttcttagaag
gggcaacaaaatatccatggaggagtacagagacaaagttcagaggggag
atcaggaatgacatccagagactgccccactggggatccatctcatacac
tatcaaaccagatcactatgcagatacacagattttgctgacgagctgat
tagctatctctggaagcttgcagtgcttgcaatacggagtgatgctcagg
tcatcttttggatggaacagagtccatgaagtctagaagatcagggactg
taaggttgtgaccttagaaaccattggactacgatctgaatctggacttc
acccataataaacactggtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_44521647_44522792
seq2: B6Ng01-145I05.b_48_1174 (reverse)

seq1  GAGCTGCAATAGGTTGAGCCCAGTGTCCTTAAAGGGACAACTGGGAACAC  50
      |||||||| |||  |||||||||  ||  |||   |||||||||  ||| 
seq2  GAGCTGCATTAG--TGAGCCCAGGTTC--TAA---GACAACTGG--ACA-  40

seq1  AGACCTGCCCCCCACCCCGACCCCCGTTTTGTATCCTGAGCCCTGTTATG  100
      ||||||||||||   |||||||||||||| || |||||||||||||||||
seq2  AGACCTGCCCCC--ACCCGACCCCCGTTTGGT-TCCTGAGCCCTGTTATG  87

seq1  AAAAAAGCTTTCTTCCACAGAAGCCATGCATGGTGATTTACCTAGCCACT  150
       ||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  -AAAAAGCTTTCTTCCACAG-AGCCATGCAT-GTGATTTACCTAGCCACT  134

seq1  GGTCAGTCTTCCTCAGGCTGAAACCTCTAAAACTGGTCCACAGTCCCCCA  200
       ||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  -GTCAGTC-TCCTCA-GCTGAAACCTCTAAAACTGGTCCACAGTCCCCCA  181

seq1  TTCCTCCCTCTGATCTGGTTACCTTAGGGACTGTGTCCTTTCTGTGTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCCTCTGATCTGGTTACCTTAGGGACTGTGTCCTTTCTGTGTACT  231

seq1  ATCCTGATTTCTAATTGTCTCTGTTTTAGTTATTCGACACTCTGACAATC  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCGATTTCTAATTGTCTCTGTTTTAGTTATTCGACACTCTGACAATC  281

seq1  AGTTTCTTGATGTCTGTTCAAGTCACTCCTCCAATTCTAATTATGGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTGATGTCTGTTCAAGTCACTCCTCCAATTCTAATTATGGAAGT  331

seq1  AGGGGTTTAACAGAGGCCATGAAGCACCAGGGCCATGAAGGAAGCACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTTAACAGAGGCCATGAAGCACCAGGGCCATGAAGGAAGCACTAC  381

seq1  CAACTATCTCCAGCATGCTGACAGTCTTGGCTTTCTTAAGTTTCTTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATCTCCAGCATGCTGACAGTCTTGGCTTTCTTAAGTTTCTTGTAA  431

seq1  TTTACAGTGTCTTTTAAAAAGGGACCCAGGGGGATGAAAGTTTTAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGTGTCTTTTAAAAAGGGACCCAGGGGGATGAAAGTTTTAAAATG  481

seq1  TGCATACTGCAAACCTCTTGATAAAATGTCATTGGAGCTCCTTATATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACTGCAAACCTCTTGATAAAATGTCATTGGAGCTCCTTATATACT  531

seq1  TCCAAAGAGATATGGCTGACCTGCTAAAAGTCGACTCTACTTTTTGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGAGATATGGCTGACCTGCTAAAAGTCGACTCTACTTTTTGAAAC  581

seq1  ACGTGACTCCATTTAGAGTAATAAAGTCAAATATTTACTCTCAATTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGACTCCATTTAGAGTAATAAAGTCAAATATTTACTCTCAATTTCTA  631

seq1  ACAGCAACAGGTGATTTAAGTAGTAAGTTCCCTTTGCTCCAAAGCACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAACAGGTGATTTAAGTAGTAAGTTCCCTTTGCTCCAAAGCACATT  681

seq1  GGTTTTACTTTAAATATCCTCCCTAAAAGAAGACAGCCAAAGGTGTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTACTTTAAATATCCTCCCTAAAAGAAGACAGCCAAAGGTGTATTT  731

seq1  TGGATTTAAAAATTTGCTTTTTGACATTCAGAACAGAAATGTTCAGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTAAAAATTTGCTTTTTGACATTCAGAACAGAAATGTTCAGATTT  781

seq1  AATTCTCATGTGTTTGCCTTCGCAAAGCAGTGTAACACTGGGCAACACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCATGTGTTTGCCTTCGCAAAGCAGTGTAACACTGGGCAACACTT  831

seq1  CCTGGACCGTTCAAATAGAAGCAAGCCTCTTAGCTGGGGCCTCTCAGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACCGTTCAAATAGAAGCAAGCCTCTTAGCTGGGGCCTCTCAGCTG  881

seq1  GGACTTAAAGAAACGGAAGCCTCCAGAGCGTTTAGTATTTGCTTCTGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTAAAGAAACGGAAGCCTCCAGAGCGTTTAGTATTTGCTTCTGCAT  931

seq1  GTGCTGACCTGAGCTCAAAACTCTTACTTTATTTCACCTGATCTAAGCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGACCTGAGCTCAAAACTCTTACTTTATTTCACCTGATCTAAGCCA  981

seq1  TGTCTAAAACAGAACAAACAACAACAAAAAGACTACAAAAGGTTTTCCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAAAACAGAACAAACAACAACAAAAAGACTACAAAAGGTTTTCCTT  1031

seq1  TTTCCCCTGCTTGGAGGTCCAGGACACTTGTTTGTTAGTGATGGGCACTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTGCTTGGAGGTCCAGGACACTTGTTTGTTAGTGATGGGCACTC  1081

seq1  TTCTCTGTCTACTACCTACATCAAAGGAATGCATGCCAGTGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTCTACTACCTACATCAAAGGAATGCATGCCAGTGAATTC  1127