BAC Information

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BAC

Clone NameB6Ng01-146M09
Chromosome12 (Build37)2 (Build37)
Map Location 15,996,028 - 15,997,154142,776,526 - 142,777,698
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042426, LOC217409, Trib2, LOC100043268, EG432636, LOC100043273
Downstream geneLpin1, Ntsr2, Greb1, E2f6, Rock2, Pqlc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146M09.bB6Ng01-146M09.g
ACCDH943827DH943828
length1,117794
definitionDH943827|Mus musculus domesticus DNA, BAC clone: B6Ng01-146M09, 5' end.DH943828|Mus musculus domesticus DNA, BAC clone: B6Ng01-146M09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,996,028 - 15,997,154)(142,776,526 - 142,777,698)
sequence
gaattcacccgtcttcatcttccggtgctgggattacaggcctgcaaagc
catgcctggcttttatataaatattgaagatttgaacttagaccctttca
ctttcaccacaagtgctcttactctctgtgctatcttcccggcttcttaa
agctcattcttaaaggttttataccctggcatcatttttaagggggaaaa
cttcccatccctgttacaagcatttaggaaaactacagactttatagctt
catcaacccggcctccgcaggagttaagttgctttcactggaaagaggtt
ttacctgtttacatggctaacatcaatattctgacttgtgttaaacagaa
accatttcaagagtgtttgttggttagtctatcctaaacttcaccatggg
tcttagcccttgccatgttattttcctatatttgtaattcaccctgagat
tcctacaatgattacgttctgctgagcaccagtcacaagatatctgtcca
aaatcttgatttttacttcttaatttgataacatagtttcttattattct
gtgacaatttcatacatgtagacaaaaccatcctagccacacccatcatc
cctctacccaccagtcgcagctacaattcctcccactaagtgcccatcca
ctttcctttcttttttgttttatttttgtttctgttttgtgaaccagtat
gcataactggggggtgctcacacaatccttaccagtggctacaacgactt
tctctctcccaacagtcctcaactgccattagctccccctgggtgtaatt
gggagagggcccataggctagtccttcaccaatgcctgaatgcctgtggg
cttagtctggtgcaggccattgcaccagactctgcccctacttaagagac
tgtttaattttcctgccatttaattatctttgcttctttgaataaggcct
gtctaatagtttcaagttcaggatatggagatgaaagttgtatttctaaa
gtcccggagaatgctgcttgtgttgtttcttgctgtctgcatgagcttga
acttgttgcttgctgcaaggtaaccttgagatcctctgcccttgtttttc
atagggcaggcatatta
gaattctttgtttagctttgcaccccattttttaatggggttatttgaat
ttctggagttcagcttcttgagctctttgtatatattggatgttagtccc
ctataagatttaggattggtaaaaattctttcccaatctgttggtggctt
ttttgtcttattgacagtatcttttgccctgcagaagctttgcaatttta
tgaggtcccatttgtcgattcttgatcttacagcacaggccattgctgtt
ctgtttaggaatttttcccctgtgcccatatcttcaagggttttccccac
tttctcctcaaaaatctcagtgtctctggttttatgtggagttctttgat
ccacttagacttgagctttgtacaaggagataagaatggatcaattctca
tccgtctacatgataacctccagttgtgccagcatcatttgttgaaaatg
ctgtcttttttccattggatggttttagctcccttgtcaaagatcatgtg
accataggtgtgtgggttcatttctgggtcttcaattctattccatcgat
ctacctgtctgttgctgtaccagtaccatgtagtttttatcacaattgct
gtagcttgaggtcaggcatggtgattcccccagaggttcttttattgttg
agaatagtttttgctatcctaagttttttgttattctagatgaatttgca
aattgccctttctaactcaatgaagaattgagttggaattttgatgggga
ttgcactgaatctgtagattgctttcggcaggatagccattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_15996028_15997154
seq2: B6Ng01-146M09.b_47_1163

seq1  GAATTCACCCGTCTTCATCTTCCGGTGCTGGGATTACAGGCCTGCAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCGTCTTCATCTTCCGGTGCTGGGATTACAGGCCTGCAAAGC  50

seq1  CATGCCTGGCTTTTATATAAATATTGAAGATTTGAACTTAGACCCTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGGCTTTTATATAAATATTGAAGATTTGAACTTAGACCCTTTCA  100

seq1  CTTTCACCACAAGTGCTCTTACTCTCTGTGCTATCTTCCCGGCTTCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACCACAAGTGCTCTTACTCTCTGTGCTATCTTCCCGGCTTCTTAA  150

seq1  AGCTCATTCTTAAAGGTTTTATACCCTGGCATCATTTTTAAGGGGGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATTCTTAAAGGTTTTATACCCTGGCATCATTTTTAAGGGGGAAAA  200

seq1  CTTCCCATCCCTGTTACAAGCATTTAGGAAAACTACAGACTTTATAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCATCCCTGTTACAAGCATTTAGGAAAACTACAGACTTTATAGCTT  250

seq1  CATCAACCCGGCCTCCGCAGGAGTTAAGTTGCTTTCACTGGAAAGAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACCCGGCCTCCGCAGGAGTTAAGTTGCTTTCACTGGAAAGAGGTT  300

seq1  TTACCTGTTTACATGGCTAACATCAATATTCTGACTTGTGTTAAACAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGTTTACATGGCTAACATCAATATTCTGACTTGTGTTAAACAGAA  350

seq1  ACCATTTCAAGAGTGTTTGTTGGTTAGTCTATCCTAAACTTCACCATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCAAGAGTGTTTGTTGGTTAGTCTATCCTAAACTTCACCATGGG  400

seq1  TCTTAGCCCTTGCCATGTTATTTTCCTATATTTGTAATTCACCCTGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCCCTTGCCATGTTATTTTCCTATATTTGTAATTCACCCTGAGAT  450

seq1  TCCTACAATGATTACGTTCTGCTGAGCACCAGTCACAAGATATCTGTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAATGATTACGTTCTGCTGAGCACCAGTCACAAGATATCTGTCCA  500

seq1  AAATCTTGATTTTTACTTCTTAATTTGATAACATAGTTTCTTATTATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTGATTTTTACTTCTTAATTTGATAACATAGTTTCTTATTATTCT  550

seq1  GTGACAATTTCATACATGTAGACAAAACCATCCTAGCCACACCCATCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAATTTCATACATGTAGACAAAACCATCCTAGCCACACCCATCATC  600

seq1  CCTCTACCCACCAGTCGCAGCTACAATTCCTCCCACTAAGTGCCCATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACCCACCAGTCGCAGCTACAATTCCTCCCACTAAGTGCCCATCCA  650

seq1  CTTTCCTTTCTTTTTTGTTTTATTTTTGTTTCTGTTTTGTGAACCAGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTCTTTTTTGTTTTATTTTTGTTTCTGTTTTGTGAACCAGTAT  700

seq1  GCATAACTGGGGGGTGCTCACACAATCCTTACCAGTGGCTACAACGACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAACTGGGGGGTGCTCACACAATCCTTACCAGTGGCTACAACGACTT  750

seq1  TCTCTCTCCCAACAGTCCTCAACTGCCATTAGCTCCCCCTGGGTGTAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCCAACAGTCCTCAACTGCCATTAGCTCCCCCTGGGTGTAATT  800

seq1  GGGAGAGGGCCCATAGGCTAGTCCTTCACCAATGCCTGAATGCCTGTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGGCCCATAGGCTAGTCCTTCACCAATGCCTGAATGCCTGTGGG  850

seq1  CTTAGTCTGGTGCAGGCCATTGCACCAGACTCTGCCCCTACTTAAGAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCTGGTGCAGGCCATTGCACCAGACTCTGCCCCTACTTAAGAGAC  900

seq1  TGTTTAATTTTCCTGCCATTTAATTATCTTTTGCTTCTTTGAATAAGGCC  950
      |||||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  TGTTTAATTTTCCTGCCATTTAATTATC-TTTGCTTCTTTGAATAAGG-C  948

seq1  CTGTCTAATAGTTTCAAAGTTCA-GATAT-GAGATGAAAGTTGGTAATTC  998
      ||||||||||||||| ||||||| ||||| |||||||||||| ||| |||
seq2  CTGTCTAATAGTTTC-AAGTTCAGGATATGGAGATGAAAGTT-GTATTTC  996

seq1  TAAAGTCCCGGGAAGATGCTGCTGTGTG-TGTTTCATGCTGTCTGCATGA  1047
      ||||||||| |||  |||||||| |||| |||||| ||||||||||||||
seq2  TAAAGTCCC-GGAGAATGCTGCT-TGTGTTGTTTCTTGCTGTCTGCATGA  1044

seq1  GCTTGAACTTGTATGCTTGCTGCATAGGTAACCTTGAGATCTCTCTGTCC  1097
      |||||||||||| ||||||||||| |||||||||||||||| ||||| ||
seq2  GCTTGAACTTGT-TGCTTGCTGCA-AGGTAACCTTGAGATC-CTCTG-CC  1090

seq1  TTTGTTTTTCTAATAGGTCAAGTCATATTA  1127
       |||||||||  ||||| | || |||||||
seq2  CTTGTTTTTC--ATAGGGC-AGGCATATTA  1117

seq1: chr2_142776526_142777698
seq2: B6Ng01-146M09.g_68_772 (reverse)

seq1  CAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAAGT  50
      |||||||||||||||||| |||||||||||||| |||||||||||||| |
seq2  CAATTTGCAAATTCATCTAGAATAACAAAAAACTTAGGATAGCAAAAACT  50

seq1  CTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAA  100
       |||||||  |||||||||||||||| |||||||||||||||||||| ||
seq2  ATTCTCAACAATAAAAGAACCTCTGGGGGAATCACCATGCCTGACCTCAA  100

seq1  GCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAG  150
      |||       | ||||||||||||||||||| ||||||||||||| ||  
seq2  GCT-------ACAGCAATTGTGATAAAAACTACATGGTACTGGTACAGCA  143

seq1  ACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCA  200
      ||||||| ||||| | ||||||||||||||||||||||||||||||||||
seq2  ACAGACAGGTAGATCGATGGAATAGAATTGAAGACCCAGAAATGAACCCA  193

seq1  CACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAG  250
      ||||||||||||||| ||||||| |||||||||||||||||||||||  |
seq2  CACACCTATGGTCACATGATCTTTGACAAGGGAGCTAAAACCATCCAATG  243

seq1  GAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTAT  300
      ||| |||||||||||||||||||| || |||||||||||||||  |||||
seq2  GAAAAAAGACAGCATTTTCAACAAATGATGCTGGCACAACTGGAGGTTAT  293

seq1  CATGTAGAAGAATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTC  350
      |||||||| | ||| |||| ||||||| ||||||||||||||| ||| ||
seq2  CATGTAGACGGATGAGAATTGATCCATTCTTATCTCCTTGTACAAAGCTC  343

seq1  AAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACT  400
      || |||||||||||||| ||||| |||||||||||||||||||||| | |
seq2  AAGTCTAAGTGGATCAAAGAACTCCACATAAAACCAGAGACACTGAGA-T  392

seq1  TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACA  450
      | | ||||||||||||||||||| |||||||||||||||||||||||| |
seq2  TTTTGAGGAGAAAGTGGGGAAAACCCTTGAAGATATGGGCACAGGGGAAA  442

seq1  AATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGAC  500
      ||||||| ||||||||||||||||| |||||||||||||| ||||| |||
seq2  AATTCCTAAACAGAACAGCAATGGCCTGTGCTGTAAGATCAAGAATCGAC  492

seq1  AAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGT  550
      ||||||||||| || ||| | ||||| ||||||| ||||||||| || ||
seq2  AAATGGGACCTCATAAAATTGCAAAGCTTCTGCAGGGCAAAAGATACTGT  542

seq1  CAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATC  600
      ||||||||||||||  |||||||||||||||||||| || |||||| |||
seq2  CAATAAGACAAAAAAGCCACCAACAGATTGGGAAAGAATTTTTACCAATC  592

seq1  CTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAG  650
      |||||||  |||||||||||| |||||| ||||| ||||| |||||||||
seq2  CTAAATCTTATAGGGGACTAACATCCAATATATACAAAGAGCTCAAGAAG  642

seq1  GTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAA  700
       || ||| |||||| ||||||||||||||||||||||||||    |||| 
seq2  CTGAACTCCAGAAATTCAAATAACCCCATTAAAAAATGGGG--TGCAAAG  690

seq1  CCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAAC  750
      | |  ||    |||||                                  
seq2  CTAAACA----AAGAATTC-------------------------------  705

seq1  TGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTG  800
                                                        
seq2  --------------------------------------------------  705

seq1  TACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGA  850
                                                        
seq2  --------------------------------------------------  705

seq1  CACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGC  900
                                                        
seq2  --------------------------------------------------  705

seq1  ACAGGGGAAAAATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATC  950
                                                        
seq2  --------------------------------------------------  705

seq1  GAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAA  1000
                                                        
seq2  --------------------------------------------------  705

seq1  AAGACACTGTCTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATC  1050
                                                        
seq2  --------------------------------------------------  705

seq1  TTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGA  1100
                                                        
seq2  --------------------------------------------------  705

seq1  ACTCAAGAAGGTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGG  1150
                                                        
seq2  --------------------------------------------------  705

seq1  GCTCAGAACTGAACAAAGAATTC  1173
                             
seq2  -----------------------  705