BAC Information

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BAC

Clone NameB6Ng01-146O08
Chromosome2 (Build37)
Map Location 143,513,242 - 143,610,643
singlet/doubletdoublet
Overlap genePcsk2
Upstream geneKif16b, Snrpb2, Otor, LOC668915, LOC668916
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146O08.bB6Ng01-146O08.g
ACCDH943921DH943922
length1,184889
definitionDH943921|Mus musculus domesticus DNA, BAC clone: B6Ng01-146O08, 5' end.DH943922|Mus musculus domesticus DNA, BAC clone: B6Ng01-146O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,513,242 - 143,514,440)(143,609,755 - 143,610,643)
sequence
gaattccagaagacgggtattaggtttgcacttacgtgatctgttggtat
tgtttcagataaagatggcgctgcaacaagaaggatttgaccgtaaaaag
agagggtacagggacatcaatgagattgacatcaacatgaatgatcctct
ctttacaaagcaatggtacctggtaagtttctctattatttataatggcc
cacacttaaaaagatgaacttctagggggctggagagatggctcagcagt
taagagcattgactgttcttccaaaggtcctgagttcaattcccagcaac
cacatggtggctcacaaccatctgtaatggggtccaatgcccttttctgg
tgtgcatgaagacagctacagtgtactcataaaataaataaacaaatctt
tttaaaaaaagatgaacttctatttctttgttatttggtaggataataac
cagaatccaggttaatgaatgcctgtatgcccttccatatccttccaatg
tctatctgttacctcctattcatcttgccccctaagcatctaccaacagc
tgatcacatggtcttgcattctaaacaggtgcacctgtatgagaataaga
catgcaaacttcagaaggtcagatcaaatatttaggagaagtaatccaga
ggtgtttacaggcatagaaaggtgagagggacctactgaggtcacagcct
taagagtgagaatccagtgttttcctgagcaagagagatgagagactgtc
aaagatggcatttcagcactgcctaaaataatgacagcaaatcacgattc
agagcactgaaacctaggctgtctcatggcgagtgcttctgacccatcta
caatccattgggacctatgtgggtttaaaagattaatagggacagagaga
tggctcagtgactaagagcacatactgttcttccagatgacccatgttca
gttcccagtacctattatcagcagcccacaacggtctgcaactctgctcc
catgcagccacacctctggccccttaggcacctgctctcactttcataaa
cccacgcatatacacatcattaaaataataaagtaatcttcttcagagga
aatcatgacctccacaccaggttgccaggcacctttataaatgactgatt
tttactgtgaagtagtgcttacttttaggattaa
gaattctttaccatgtgcctcttacactactaaacccaactctgtgccta
tcttccacaggatctaaacatagaggtctatagggatgtagacccacttc
cacttgaccctgccactccatccactctatatcaataccacttcaccctc
tatatcctacctcatgggtggaccagggccttgtggtgacaggaaagtct
ttaccttgttcacgccatcagccatggcctggagtgtgagctctcggggc
ccatcaaccgtcttcccattgtctgtggggccccagcttgcactgtagat
gtcgatcagttgaggcatgtggctgatggaggaggcttcgatgatgtctg
tcataaagggctggtccagcatccggatccctgtgcgcaggtgggacaag
aaacaagactttggcaccctagctctcagaagacatgggggtagagaaaa
gtttgggttctgggaggagctggggaccttcagtgctttcagaacaccat
ggagtctgagggtcaaaaatggttttcagagccgggtggtggtggcgcat
gcctttaattccagcacttgggaggcagaggcaggtggatttctgagttc
gaggccagcctggtctacaaagtgagttccagaacagccagggctacaca
gagaaaccctgtctcgaaaacccctctccccccaaaaaagaaaggtgctc
agatcaccttactcactcctctttagaccggactcatgtctttccttgag
gcacatttattctgtaaacaaaaattacttgagttcttaatggggaagac
atgctgtgcaaggttatccctaagtttctaagtgggaacctagcctccag
cagtgcacaattgatcactgttgatggggggaggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143513242_143514440
seq2: B6Ng01-146O08.b_50_1233

seq1  GAATTCCAGAAGACGGGTATTAGGTTTGCACTTACGTGATCTGTTGGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGACGGGTATTAGGTTTGCACTTACGTGATCTGTTGGTAT  50

seq1  TGTTTCAGATAAAGATGGCGCTGCAACAAGAAGGATTTGACCGTAAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGATAAAGATGGCGCTGCAACAAGAAGGATTTGACCGTAAAAAG  100

seq1  AGAGGGTACAGGGACATCAATGAGATTGACATCAACATGAATGATCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTACAGGGACATCAATGAGATTGACATCAACATGAATGATCCTCT  150

seq1  CTTTACAAAGCAATGGTACCTGGTAAGTTTCTCTATTATTTATAATGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAAAGCAATGGTACCTGGTAAGTTTCTCTATTATTTATAATGGCC  200

seq1  CACACTTAAAAAGATGAACTTCTAGGGGGCTGGAGAGATGGCTCAGCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTAAAAAGATGAACTTCTAGGGGGCTGGAGAGATGGCTCAGCAGT  250

seq1  TAAGAGCATTGACTGTTCTTCCAAAGGTCCTGAGTTCAATTCCCAGCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCATTGACTGTTCTTCCAAAGGTCCTGAGTTCAATTCCCAGCAAC  300

seq1  CACATGGTGGCTCACAACCATCTGTAATGGGGTCCAATGCCCTTTTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTGGCTCACAACCATCTGTAATGGGGTCCAATGCCCTTTTCTGG  350

seq1  TGTGCATGAAGACAGCTACAGTGTACTCATAAAATAAATAAACAAATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGAAGACAGCTACAGTGTACTCATAAAATAAATAAACAAATCTT  400

seq1  TTTAAAAAAAGATGAACTTCTATTTCTTTGTTATTTGGTAGGATAATAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAAGATGAACTTCTATTTCTTTGTTATTTGGTAGGATAATAAC  450

seq1  CAGAATCCAGGTTAATGAATGCCTGTATGCCCTTCCATATCCTTCCAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCCAGGTTAATGAATGCCTGTATGCCCTTCCATATCCTTCCAATG  500

seq1  TCTATCTGTTACCTCCTATTCATCTTGCCCCCTAAGCATCTACCAACAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTGTTACCTCCTATTCATCTTGCCCCCTAAGCATCTACCAACAGC  550

seq1  TGATCACATGGTCTTGCATTCTAAACAGGTGCACCTGTATGAGAATAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACATGGTCTTGCATTCTAAACAGGTGCACCTGTATGAGAATAAGA  600

seq1  CATGCAAACTTCAGAAGGTCAGATCAAATATTTAGGAGAAGTAATCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAACTTCAGAAGGTCAGATCAAATATTTAGGAGAAGTAATCCAGA  650

seq1  GGTGTTTACAGGCATAGAAAGGTGAGAGGGACCTACTGAGGTCACAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTACAGGCATAGAAAGGTGAGAGGGACCTACTGAGGTCACAGCCT  700

seq1  TAAGAGTGAGAATCCAGTGTTTTCCTGAGCAAGAGAGATGAGAGACTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTGAGAATCCAGTGTTTTCCTGAGCAAGAGAGATGAGAGACTGTC  750

seq1  AAAGATGGCATTTCAGCACTGCCTAAAATAATGACAGCAAATCAGGATTC  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAGATGGCATTTCAGCACTGCCTAAAATAATGACAGCAAATCACGATTC  800

seq1  AGAGCACTGAAACCTAGGCTGTCTCATGGCGAGTGCTTCTGACCCATCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTGAAACCTAGGCTGTCTCATGGCGAGTGCTTCTGACCCATCTA  850

seq1  CAATCCATTGGGACCTATGTGGGTTTAAAAGATTAATAGGGACAAGAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAATCCATTGGGACCTATGTGGGTTTAAAAGATTAATAGGGAC-AGAGAG  899

seq1  ATGGCTCAGTGACTAAGAGCACATACTGTTCTTCCAGATGACCCATGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGTGACTAAGAGCACATACTGTTCTTCCAGATGACCCATGTTC  949

seq1  AGTTCCCAGTACCTATTATCAAGCAGCCCACAACGGTCTGCAACTCCTGC  1000
      |||||||||||||||||||| |||||||||||||||||||||||| ||||
seq2  AGTTCCCAGTACCTATTATC-AGCAGCCCACAACGGTCTGCAACT-CTGC  997

seq1  TCCCATGCAGCCCACACCTCTGGCCCCTTAGGCACCTGCTCTCACTTTCA  1050
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGCAG-CCACACCTCTGGCCCCTTAGGCACCTGCTCTCACTTTCA  1046

seq1  TAAACCCACGCATATACACATCATTAAAAATAATAAAAGTAAATCTCTTC  1100
      ||||||||||||||||||||||||| |||||||| |||||||   |||||
seq2  TAAACCCACGCATATACACATCATT-AAAATAAT-AAAGTAATCTTCTTC  1094

seq1  AAGAAGGAAATCAATGA-CTCCAAACCAACCCAAGTTGCCAAGCA-CTTT  1148
      |   |||||||| |||| ||||| |     ||| ||||||| ||| ||||
seq2  A--GAGGAAATC-ATGACCTCCACA-----CCAGGTTGCCAGGCACCTTT  1136

seq1  ATAAATGACTGATTTTTAACTGTGAGTGATGGCTTACTTTATTAGGATTA  1198
      ||||||||||||||||| |||||||   |  ||||||||  |||||||||
seq2  ATAAATGACTGATTTTT-ACTGTGAAGTAGTGCTTACTT--TTAGGATTA  1183

seq1  A  1199
      |
seq2  A  1184

seq1: chr2_143609755_143610643
seq2: B6Ng01-146O08.g_68_956 (reverse)

seq1  CCCCCCCT-CCCCCATCAACAGTGATCAATTGTGCACTGCTGGAGGCTAG  49
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCTCCCCCCATCAACAGTGATCAATTGTGCACTGCTGGAGGCTAG  50

seq1  GTTCCCACTTAGAAACTTAGGGATAACCTTGCACAGCATGTCTTTCCCCA  99
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTTCCCACTTAGAAACTTAGGGATAACCTTGCACAGCATGTC-TTCCCCA  99

seq1  TTAAGAACTCAAGTAATTTTTGTTTACAGAATAAATGTGCCTCAAGGAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACTCAAGTAATTTTTGTTTACAGAATAAATGTGCCTCAAGGAAA  149

seq1  GACATGAGTCCGGTCTAAAGAGGAGTGAGTAAGGTGATCTGAGCACCTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAGTCCGGTCTAAAGAGGAGTGAGTAAGGTGATCTGAGCACCTTT  199

seq1  CTTTTTTGGGGGGAGAGGGGTTTTCGAGACAGGGTTTCTCTGTGTAGCCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTGGGGGGAGAGGGGTTTTCGAGACAGGGTTTCTCTGTGTAGCCC  249

seq1  TGGCTGTTCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTTCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAA  299

seq1  ATCCACCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGCATGCGCCACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGCATGCGCCACC  349

seq1  ACCACCCGGCTCTGAAAACCATTTTTGACCCTCAGACTCCATGGTGTTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCGGCTCTGAAAACCATTTTTGACCCTCAGACTCCATGGTGTTCT  399

seq1  GAAAGCACTGAAGGTCCCCAGCTCCTCCCAGAACCCAAACTTTTCTCTAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCACTGAAGGTCCCCAGCTCCTCCCAGAACCCAAACTTTTCTCTAC  449

seq1  CCCCATGTCTTCTGAGAGCTAGGGTGCCAAAGTCTTGTTTCTTGTCCCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGTCTTCTGAGAGCTAGGGTGCCAAAGTCTTGTTTCTTGTCCCAC  499

seq1  CTGCGCACAGGGATCCGGATGCTGGACCAGCCCTTTATGACAGACATCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCACAGGGATCCGGATGCTGGACCAGCCCTTTATGACAGACATCAT  549

seq1  CGAAGCCTCCTCCATCAGCCACATGCCTCAACTGATCGACATCTACAGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGCCTCCTCCATCAGCCACATGCCTCAACTGATCGACATCTACAGTG  599

seq1  CAAGCTGGGGCCCCACAGACAATGGGAAGACGGTTGATGGGCCCCGAGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGGGGCCCCACAGACAATGGGAAGACGGTTGATGGGCCCCGAGAG  649

seq1  CTCACACTCCAGGCCATGGCTGATGGCGTGAACAAGGTAAAGACTTTCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACTCCAGGCCATGGCTGATGGCGTGAACAAGGTAAAGACTTTCCT  699

seq1  GTCACCACAAGGCCCTGGTCCACCCATGAGGTAGGATATAGAGGGTGAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCACAAGGCCCTGGTCCACCCATGAGGTAGGATATAGAGGGTGAAG  749

seq1  TGGTATTGATATAGAGTGGATGGAGTGGCAGGGTCAAGTGGAAGTGGGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTGATATAGAGTGGATGGAGTGGCAGGGTCAAGTGGAAGTGGGTC  799

seq1  TACATCCCTATAGACCTCTATGTTTAGATCCTGTGGAAGATAGGCACAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCCTATAGACCTCTATGTTTAGATCCTGTGGAAGATAGGCACAGA  849

seq1  GTTGGGTTTAGTAGTGTAAGAGGCACATGGTAAAGAATTC  889
      ||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTTTAGTAGTGTAAGAGGCACATGGTAAAGAATTC  889