BAC Information

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BAC

Clone NameB6Ng01-147E04
Chromosome2 (Build37)
Map Location 142,315,971 - 142,488,321
singlet/doubletdoublet
Overlap geneLOC668913, LOC668914, Kif16b
Upstream genenone
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147E04.bB6Ng01-147E04.g
ACCDH944189DH944190
length1,1241,208
definitionDH944189|Mus musculus domesticus DNA, BAC clone: B6Ng01-147E04, 5' end.DH944190|Mus musculus domesticus DNA, BAC clone: B6Ng01-147E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,315,971 - 142,317,100)(142,487,111 - 142,488,321)
sequence
gaattcatagtatgtgaattatatctcaaatgctggtaaatgtataaaca
agcaaaaaacttggaggtatgaaaaactacaatcatataaatattcatgc
ttatttctagtatcagtattttttcttgaagtttccaatctaacatttac
ctatgagatcataaatatacaaacttccactcacaagtgctcagaggttt
tcagacagtgtatgcgagtggaagtgaagggcagagatttctaatttaaa
aaagctaccttggaaacacatttttgcttgaggtattaaatgcaatcaat
ggttggcagattcatgtaaaattaaacaacatatagttactctataatat
agcaatttcatttaaatatttaccccagaggaatgaagaaatatgttcac
aaaaggtgtacagggacacaaaggaggagccaagatggtagattagaaac
taaccatgctttgtaggttttctgcaactcagtagagaagcagccagtaa
atcatgctctcagtaagcagaaggcttgatagaaggttctaaaatctaat
atggaacagagaatgaaataccaaaaggctttcgttatcacacccgaggg
caagaaaggcatcatcagtgttgtgcctatggcaactctatgatgtgtca
gtgtgaaggagtagaaaggaaaagagaaaagaggacactacaaacctgac
ccagaatagatgtatagcagaaagggggtctgaacggagtgaatctgggg
taatcctgtcaggtcagccactgagaaacactacttctcaacctaaaaca
tgctgctgtaacaggaagccatcttgtaaagctcttacccaaactcactc
tttttaaaggtagaatcaagtctcttaggtctttctttcccctaaatgca
gagtaaacatagttatgcagtagacaccagtatctaccacgtcgcagatg
tggcccacaagtaatcctattgaaaccatgcacagcaaggttccagtgag
agacacagctgctttctgttcattctagctatttgattggcctgctaaga
ggggcaaggagcctgaactgactgtgcaatgcatggcatgttgcgattca
gcttggaagcattgtcatgggcag
gaattcagttttacaaagctgtcagcctccttgaatctttaaatagcaaa
tagctatgtagtcaaaaatagaagctttctgacctgccctgttatcatcc
aagtcccaggtagccaactgagtggtttacaccacgccattctcttggct
tggtgaatagttggtgttaaagtcactgcttacaagataagtagagaaag
aaagacctgaattcagagaaactggattgccttgggatggttttctaaaa
tatatggaaagagaccctagactagcaaatcctgactttgtaaattttat
gcaggatccatatgtttatgtttatgtagtaacacagcagcctcctctgg
atgggctctttagctcctaattaagataccacctgcttttcccttcatgc
ccatcttggcagccctagttgaatgttcagtttcataggtctctaatgct
atttagtgagagccagtaaccagtgagagagtgccttgactctttgtctc
agcattaacgacaaagataggccacagcatgaacagtaaagaactcctga
gtccctagagatgtgggcttgtgttgtcctgtcttctgtagcaatgaaag
atagataggttacaactagaaactattttcagagtatgaaatctacattc
taaggggccttcatgactgagcaacccatgtgtttactttagaaataaga
agtcagtactcagacagaaaatcagttaaaagtcatacaaagaactttaa
atgaacatggtttatgtgtgctgattgttcgactcatgttcatcctgtgt
ctccctctcggtttctgtatttactaaacaagagaatagttgcataattc
tgtaaatgagacaaaatgtcacaaaattaatttttaacattgctcatagc
aattccccatggactacttactttagatgacaagaattgtgcccttttct
ttgaatgtcagtacagtgacagttctggcctatttcagacctagaaagag
ataattacatcatagcaggaggtgggaaatgcaagcattgaactgaatct
tactatttattccctggaaactcagtatttaatattctcagatctgactg
tatttcttacttccaaaatactgtgatactaatggaatgtaatagcttgt
tcttcactgtctaccgctctgaaatgaaattgacaccagctaggtgaagt
agagactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142315971_142317100
seq2: B6Ng01-147E04.b_45_1168

seq1  GAATTCATAGTATGTGAATTATATCTCAAATGCTGGTAAATGTATAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTATGTGAATTATATCTCAAATGCTGGTAAATGTATAAACA  50

seq1  AGCAAAAAACTTGGAGGTATGAAAAACTACAATCATATAAATATTCATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAAACTTGGAGGTATGAAAAACTACAATCATATAAATATTCATGC  100

seq1  TTATTTCTAGTATCAGTATTTTTTCTTGAAGTTTCCAATCTAACATTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTAGTATCAGTATTTTTTCTTGAAGTTTCCAATCTAACATTTAC  150

seq1  CTATGAGATCATAAATATACAAACTTCCACTCACAAGTGCTCAGAGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGATCATAAATATACAAACTTCCACTCACAAGTGCTCAGAGGTTT  200

seq1  TCAGACAGTGTATGCGAGTGGAAGTGAAGGGCAGAGATTTCTAATTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAGTGTATGCGAGTGGAAGTGAAGGGCAGAGATTTCTAATTTAAA  250

seq1  AAAGCTACCTTGGAAACACATTTTTGCTTGAGGTATTAAATGCAATCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTACCTTGGAAACACATTTTTGCTTGAGGTATTAAATGCAATCAAT  300

seq1  GGTTGGCAGATTCATGTAAAATTAAACAACATATAGTTACTCTATAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCAGATTCATGTAAAATTAAACAACATATAGTTACTCTATAATAT  350

seq1  AGCAATTTCATTTAAATATTTACCCCAGAGGAATGAAGAAATATGTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTTCATTTAAATATTTACCCCAGAGGAATGAAGAAATATGTTCAC  400

seq1  AAAAGGTGTACAGGGACACAAAGGAGGAGCCAAGATGGTAGATTAGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTGTACAGGGACACAAAGGAGGAGCCAAGATGGTAGATTAGAAAC  450

seq1  TAACCATGCTTTGTAGGTTTTCTGCAACTCAGTAGAGAAGCAGCCAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATGCTTTGTAGGTTTTCTGCAACTCAGTAGAGAAGCAGCCAGTAA  500

seq1  ATCATGCTCTCAGTAAGCAGAAGGCTTGATAGAAGGTTCTAAAATCTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCTCTCAGTAAGCAGAAGGCTTGATAGAAGGTTCTAAAATCTAAT  550

seq1  ATGGAACAGAGAATGAAATACCAAAAGGCTTTCGTTATCACACCCGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACAGAGAATGAAATACCAAAAGGCTTTCGTTATCACACCCGAGGG  600

seq1  CAAGAAAGGCATCATCAGTGTTGTGCCTATGGCAACTCTATGATGTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGGCATCATCAGTGTTGTGCCTATGGCAACTCTATGATGTGTCA  650

seq1  GTGTGAAGGAGTAGAAAGGAAAAGAGAAAAGAGGACACTACAAACCTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAGGAGTAGAAAGGAAAAGAGAAAAGAGGACACTACAAACCTGAC  700

seq1  CCAGAATAGATGTATAGCAGAAAGGGGGTCTGAACGGAGTGAATCTGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATAGATGTATAGCAGAAAGGGGGTCTGAACGGAGTGAATCTGGGG  750

seq1  TAATCCTGTCAGGTCAGCCACTGAGAAACACTACTTCTCAACCTAAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTGTCAGGTCAGCCACTGAGAAACACTACTTCTCAACCTAAAACA  800

seq1  TGCTGCTGTAACAGGAAGCCATCTTGTAAAGCTCTTACCCAAACTCACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGTAACAGGAAGCCATCTTGTAAAGCTCTTACCCAAACTCACTC  850

seq1  TTTTTAAAGGTAGAATCAAGTCTCTTAGGTCTTTCTTTCCCCTAAATGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGGTAGAATCAAGTCTCTTAGGTCTTTCTTTCCCCTAAATGCA  900

seq1  GAGTAAACATAGTTATGCAGTAGACACCAGTATCTACCACGTCGCAGATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAACATAGTTATGCAGTAGACACCAGTATCTACCACGTCGCAGATG  950

seq1  TGGCCCACAAGTAATCCTATTGAAAACCATGCACAGCAGGGTTCCAGTGA  1000
      |||||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  TGGCCCACAAGTAATCCTATTG-AAACCATGCACAGCAAGGTTCCAGTGA  999

seq1  GAGACACAGCTTGCTTTCTGTTCATTCTAGCTATTTGATTGGCCTGCTAA  1050
      |||||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  GAGACACAGC-TGCTTTCTGTTCATTCTAGCTATTTGATTGGCCTGCT-A  1047

seq1  AGAGGGGCAA-GAGCCTGAACTGACTTGTGCAATTGCAATGGCATGTTGC  1099
      |||||||||| |||||||||||||| ||||||| ||| ||||||||||||
seq2  AGAGGGGCAAGGAGCCTGAACTGAC-TGTGCAA-TGC-ATGGCATGTTGC  1094

seq1  GA-TCAGCCTTGGAAGCCATTGTCATGGGCAG  1130
      || |||| |||||||| |||||||||||||||
seq2  GATTCAG-CTTGGAAG-CATTGTCATGGGCAG  1124

seq1: chr2_142487111_142488321
seq2: B6Ng01-147E04.g_71_1278 (reverse)

seq1  CAGTCTC-ACTCTTCCCTATGCTGGTGTCAATTTCA-TTCAG-GCGTGAA  47
      ||||||| ||| |  |||| |||||||||||||||| ||||| |||  | 
seq2  CAGTCTCTACT-TCACCTA-GCTGGTGTCAATTTCATTTCAGAGCGGTAG  48

seq1  CCAGTGAAG-ACAGACTGATAACATT-CATGTATGTTACAGTAATTTTTG  95
       |||||||| |||  || || ||||| |||   | | ||||||  |||||
seq2  ACAGTGAAGAACAAGCT-ATTACATTCCATTAGTATCACAGTA--TTTTG  95

seq1  AAAGTAAGAAATACAGTCAGATCTGTGAATATTAAATACTGTGTTTTCA-  144
       |||||||||||||||||||||||| ||||||||||||||| |||| || 
seq2  GAAGTAAGAAATACAGTCAGATCTGAGAATATTAAATACTGAGTTTCCAG  145

seq1  AGAATAAATAAGTTAGATTCAGTTCAATGCTTGCATTTCCCACCTCTTGC  194
       |||||||| ||| |||||||||||||||||||||||||||||||| |||
seq2  GGAATAAAT-AGTAAGATTCAGTTCAATGCTTGCATTTCCCACCTCCTGC  194

seq1  TATGATGTTAATTATCTCTTTCTAGGTCTGAAATAGGCCAGAACTTGTCA  244
      ||||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  TATGATG-TAATTATCTCTTTCTAGGTCTGAAATAGGCCAGAAC-TGTCA  242

seq1  CTGTACTGACATTCAAAGAAAAGGGCACAATTCCTGGTCATCT-AAGTTA  293
      |||||||||||||||||||||||||||||||| || ||||||| |||| |
seq2  CTGTACTGACATTCAAAGAAAAGGGCACAATT-CTTGTCATCTAAAGTAA  291

seq1  GTAGTCCATGGGGAATTGCTATGAGCAAATGTTTAAAAATTAATTTTGTG  343
      |||||||||||||||||||||||||| |||| ||||||||||||||||||
seq2  GTAGTCCATGGGGAATTGCTATGAGC-AATG-TTAAAAATTAATTTTGTG  339

seq1  ACATTTTGTCTCATTTACAGAATTATGCAACTATTCTCTTGTTTAGTAAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTGTCTCATTTACAGAATTATGCAACTATTCTCTTGTTTAGTAAA  389

seq1  TACAGAAACCGAGAGGGAGACACAGGATGAACATGAGTCGAACAATCAGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAACCGAGAGGGAGACACAGGATGAACATGAGTCGAACAATCAGC  439

seq1  ACACATAAACCATGTTCATTTAAAGTTCTTTGTATGACTTTTAACTGA-T  492
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACACATAAACCATGTTCATTTAAAGTTCTTTGTATGACTTTTAACTGATT  489

seq1  TTCTGTCTGAGTACTGACTTCTTATTTCTAAAGTAAACACATGGGTTGCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTGAGTACTGACTTCTTATTTCTAAAGTAAACACATGGGTTGCT  539

seq1  CAGTCATGAAGGCCCCTTAGAATGTAGATTTCATACTCTGAAAATAGTTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATGAAGGCCCCTTAGAATGTAGATTTCATACTCTGAAAATAGTTT  589

seq1  CTAGTTGTAACCTATCTATCTTTCATTGCTACAGAAGACAGGACAACACA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGTAACCTATCTATCTTTCATTGCTACAGAAGACAGGACAACACA  639

seq1  AGCCCACATCTCTAGGGACTCAGGAGTTCTTTACTGTTCATGCTGTGGCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACATCTCTAGGGACTCAGGAGTTCTTTACTGTTCATGCTGTGGCC  689

seq1  TATCTTTGTCGTTAATGCTGAGACAAAGAGTCAAGGCACTCTCTCACTGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTGTCGTTAATGCTGAGACAAAGAGTCAAGGCACTCTCTCACTGG  739

seq1  TTACTGGCTCTCACTAAATAGCATTAGAGACCTATGAAACTGAACATTCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGCTCTCACTAAATAGCATTAGAGACCTATGAAACTGAACATTCA  789

seq1  ACTAGGGCTGCCAAGATGGGCATGAAGGGAAAAGCAGGTGGTATCTTAAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGCTGCCAAGATGGGCATGAAGGGAAAAGCAGGTGGTATCTTAAT  839

seq1  TAGGAGCTAAAGAGCCCATCCAGAGGAGGCTGCTGTGTTACTACATAAAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCTAAAGAGCCCATCCAGAGGAGGCTGCTGTGTTACTACATAAAC  889

seq1  ATAAACATATGGATCCTGCATAAAATTTACAAAGTCAGGATTTGCTAGTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACATATGGATCCTGCATAAAATTTACAAAGTCAGGATTTGCTAGTC  939

seq1  TAGGGTCTCTTTCCATATATTTTAGAAAACCATCCCAAGGCAATCCAGTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCTCTTTCCATATATTTTAGAAAACCATCCCAAGGCAATCCAGTT  989

seq1  TCTCTGAATTCAGGTCTTTCTTTCTCTACTTATCTTGTAAGCAGTGACTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAATTCAGGTCTTTCTTTCTCTACTTATCTTGTAAGCAGTGACTT  1039

seq1  TAACACCAACTATTCACCAAGCCAAGAGAATGGCGTGGTGTAAACCACTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCAACTATTCACCAAGCCAAGAGAATGGCGTGGTGTAAACCACTC  1089

seq1  AGTTGGCTACCTGGGACTTGGATGATAACAGGGCAGGTCAGAAAGCTTCT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCTACCTGGGACTTGGATGATAACAGGGCAGGTCAGAAAGCTTCT  1139

seq1  ATTTTTGACTACATAGCTATTTGCTATTTAAAGATTCAAGGAGGCTGACA  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGACTACATAGCTATTTGCTATTTAAAGATTCAAGGAGGCTGACA  1189

seq1  GCTTTGTAAAACTGAATTC  1211
      |||||||||||||||||||
seq2  GCTTTGTAAAACTGAATTC  1208