BAC Information

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BAC

Clone NameB6Ng01-147N07
Chromosome2 (Build37)
Map Location 77,670,552 - 77,818,781
singlet/doubletdoublet
Overlap geneBC003993, LOC667920
Upstream geneTtn, 2610301F02Rik, Sestd1, LOC623706, LOC667906, Zfp533
Downstream geneOTTMUSG00000016703, LOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147N07.bB6Ng01-147N07.g
ACCDH944600DH944601
length1,156392
definitionDH944600|Mus musculus domesticus DNA, BAC clone: B6Ng01-147N07, 5' end.DH944601|Mus musculus domesticus DNA, BAC clone: B6Ng01-147N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,817,599 - 77,818,781)(77,670,552 - 77,670,914)
sequence
gaattctaacagctttgccctgggccagtagccttagccactaccttatc
ctgcaggtttctattccacaaggattttcagaaaccaggaagaaatgtga
tcaaagattcagtatgtcagtcttgggctgttcgcatcacaaaagctccc
aactatacagaaaatgtgaaacaaaaaataataataataataatttccta
agtttcatactccttatgatatacctccctgttctatgcctgataacaat
ttctatttatagatcaaaaccacgactttttttttttatcctgaaacgtc
ctgataggcagaacactaatttttagaagagcgttttcctagagcagtct
gacaaaattttgtcatcttttaatatactattaacgagcttgctgactgc
agatgctgggcttaaaacacagcaccaaatgatattaaatttttactaga
tctaagactaaagcaggtagcaaaatccccattattgctttttctgggta
aactcatgtgacttaatccaaggcttaccaagcacatactgaaggatcaa
gtgagattgtagacaccttctctttgtcatatagtctcgtcgctgtctta
catggacctaatttccaccgaagtgcttattcaaaataaataaaataaac
taaaacaaaacgcacaggtctcttctgtatgctgtacctggctttgggca
ggaaggagttcatagttcgagcagatcttctttctggggactgatgttat
aagattcccccaaatgtctggcctctgccctaccttccattcccatttgg
agcccggaaatggcagaacaagctcctgaacgcaagcctaggtgcccttc
agctcctccttctgttccgtttctttccccaaaattatgatcacaagaaa
caagctgcatgaggaatgggaaaaaaaaaaaactctaggaggaaaaaaaa
aggtaatatttttaattatcctgtgtgtggccatgcattttgtattttgc
atgcatgatatctggctctaatatgctgactgtgctgtttacctgcagag
ctatcattatctgctggtagtaaagaagttctgaaagccttggaggtttc
tccccttcctggatgctatgacttaaaaaaacagaacaacctggtaacac
atatcc
aaaggaacccaagagaaagttgtcagaacactcggagtatgtatgtgtga
attaactcagtgcaaaatgtgggcattggtgctgagtgaatgtgggcaga
gtaccagatgcccctgatgacagtgagaggtaccagtgcttcctgtgagc
attctcatattgttggaagtaatcgtcatagcttcctgtgagtgtgcaaa
ctgccatcacagctcattcgggaatcttgaccaagactgctttaaatata
tatatatatatatatatatatatatatatatatatatatatatatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
tatatcgcgcgcgcggagggtgtggatatatatatgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_77817599_77818781
seq2: B6Ng01-147N07.b_48_1203 (reverse)

seq1  GGATAATGTGTTACCCAGTTTTGTTCTGTTTTTTTTTTAAGTCACTAGCA  50
      |||| ||||||||||  |  ||||||||   ||||||||||||| |||||
seq2  GGAT-ATGTGTTACCAGG--TTGTTCTG---TTTTTTTAAGTCA-TAGCA  43

seq1  CTCAGGAGAGGGAAGAACAACCTCAAGGGCCTCTCAGGAACCTCCTTTAC  100
        ||||| |||| |||  |||||| | || || ||||  | || ||||||
seq2  TCCAGGA-AGGGGAGA--AACCTCCAAGG-CTTTCAG--AACTTCTTTAC  87

seq1  TACAAGGCAAGATAAATGATAGCTTCTGCAGTGTTAAACAGCACAGTCAG  150
      ||| ||   |||| ||||||||| ||||||  | ||||||||||||||||
seq2  TACCAG--CAGAT-AATGATAGC-TCTGCA--GGTAAACAGCACAGTCAG  131

seq1  CAATATTAGAGCCAAGATAATCAATGCATGCAAAATACAAAATGCATGGG  200
      | ||||||||||| |||| ||| |||||||||||||||||||||||| ||
seq2  C-ATATTAGAGCC-AGAT-ATC-ATGCATGCAAAATACAAAATGCAT-GG  176

seq1  CCACACACAGGATATTTAAAAATATTTACCTTTTTTTTTTCCTCCTAGAG  250
      |||||||||||||| ||||||||| ||||| |||||||||||||||||||
seq2  CCACACACAGGATAATTAAAAATA-TTACC-TTTTTTTTTCCTCCTAGAG  224

seq1  TTTTTTTTTTTTTCCCATTCCCTCATGCAGCTTGTTTCTTGTGATCATAA  300
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  -TTTTTTTTTTTTCCCATT-CCTCATGCAGCTTGTTTCTTGTGATCATAA  272

seq1  TTTTGGGGAAAGAAACGGAACAGAAGGAGGAGCTGAAGGGCACCTAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGGAAAGAAACGGAACAGAAGGAGGAGCTGAAGGGCACCTAGGCT  322

seq1  TGCGTTCAGGAGCTTGTTCTGCCATTTCCGGGCTCCAAATGGGAATGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTCAGGAGCTTGTTCTGCCATTTCCGGGCTCCAAATGGGAATGGAA  372

seq1  GGTAGGGCAGAGGCCAGACATTTGGGGGAATCTTATAACATCAGTCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGCAGAGGCCAGACATTTGGGGGAATCTTATAACATCAGTCCCCA  422

seq1  GAAAGAAGATCTGCTCGAACTATGAACTCCTTCCTGCCC-AAGCCAGGTA  499
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAAAGAAGATCTGCTCGAACTATGAACTCCTTCCTGCCCAAAGCCAGGTA  472

seq1  CAGCATACAGAAGAGACCTGTGCGTTTTGTTTTAGTTTATTTTATTTATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATACAGAAGAGACCTGTGCGTTTTGTTTTAGTTTATTTTATTTATT  522

seq1  TTGAATAAGCACTTCGGTGGAAATTAGGTCCATGTAAGACAGCGACGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAAGCACTTCGGTGGAAATTAGGTCCATGTAAGACAGCGACGAGA  572

seq1  CTATATGACAAAGAGAAGGTGTCTACAATCTCACTTGATCCTTCAGTATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGACAAAGAGAAGGTGTCTACAATCTCACTTGATCCTTCAGTATG  622

seq1  TGCTTGGTAAGCCTTGGATTAAGTCACATGAGTTTACCCAGAAAAAGCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGTAAGCCTTGGATTAAGTCACATGAGTTTACCCAGAAAAAGCAA  672

seq1  TAATGGGGATTTTGCTACCTGCTTTAGTCTTAGATCTAGTAAAAATTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGGATTTTGCTACCTGCTTTAGTCTTAGATCTAGTAAAAATTTAA  722

seq1  TATCATTTGGTGCTGTGTTTTAAGCCCAGCATCTGCAGTCAGCAAGCTCG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTTGGTGCTGTGTTTTAAGCCCAGCATCTGCAGTCAGCAAGCTCG  772

seq1  TTAATAGTATATTAAAAGATGACAAAATTTTGTCAGACTGCTCTAGGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGTATATTAAAAGATGACAAAATTTTGTCAGACTGCTCTAGGAAA  822

seq1  ACGCTCTTCTAAAAATTAGTGTTCTGCCTATCAGGACGTTTCAGGATAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCTTCTAAAAATTAGTGTTCTGCCTATCAGGACGTTTCAGGATAAA  872

seq1  AAAAAAAAGTCGTGGTTTTGATCTATAAATAGAAATTGTTATCAGGCATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGTCGTGGTTTTGATCTATAAATAGAAATTGTTATCAGGCATA  922

seq1  GAACAGGGAGGTATATCATAAGGAGTATGAAACTTAGGAAATTATTATTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGGAGGTATATCATAAGGAGTATGAAACTTAGGAAATTATTATTA  972

seq1  TTATTATTTTTTGTTTCACATTTTCTGTATAGTTGGGAGCTTTTGTGATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTTTTTGTTTCACATTTTCTGTATAGTTGGGAGCTTTTGTGATG  1022

seq1  CGAACAGCCCAAGACTGACATACTGAATCTTTGATCACATTTCTTCCTGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACAGCCCAAGACTGACATACTGAATCTTTGATCACATTTCTTCCTGG  1072

seq1  TTTCTGAAAATCCTTGTGGAATAGAAACCTGCAGGATAAGGTAGTGGCTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAAATCCTTGTGGAATAGAAACCTGCAGGATAAGGTAGTGGCTA  1122

seq1  AGGCTACTGGCCCAGGGCAAAGCTGTTAGAATTC  1183
      ||||||||||||||||||||||||||||||||||
seq2  AGGCTACTGGCCCAGGGCAAAGCTGTTAGAATTC  1156

seq1: chr2_77670552_77670914
seq2: B6Ng01-147N07.g_70_467

seq1  GAATTCAAAGGAACCCAAGAGAAAGTTGTCAGAACACTCGGAGTATGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGAACCCAAGAGAAAGTTGTCAGAACACTCGGAGTATGTAT  50

seq1  GTGTGAATTAACTCAGTGCAAAATGTGGGCATTGGTGCTGAGTGAATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAATTAACTCAGTGCAAAATGTGGGCATTGGTGCTGAGTGAATGTG  100

seq1  GGCAGAGTACCAGATGCCCCTGATGACAGTGAGAGGTACCAGTGCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGTACCAGATGCCCCTGATGACAGTGAGAGGTACCAGTGCTTCCT  150

seq1  GTGAGCATTCTCATATTGTTGGAAGTAATCGTCATAGCTTCCTGTGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCATTCTCATATTGTTGGAAGTAATCGTCATAGCTTCCTGTGAGTG  200

seq1  TGCAAACTGCCATCACAGCTCATTCGGGAATCTTGACCAAGACTGCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACTGCCATCACAGCTCATTCGGGAATCTTGACCAAGACTGCTTTA  250

seq1  AATATATATATATATATATATATATATATATATATATATATATATATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATATATATATATATATATATATATATATATATATATATATATA  300

seq1  TATATATATGTATATGTATATATATA-------------AT-GAAATATG  336
      ||||||||| ||||| ||||||||||             ||  | |||| 
seq2  TATATATATATATATATATATATATATATATATATATATATATATATATA  350

seq1  TACACACACACC---------------------ATATATATGTGTGTG  363
      || | | | | |                     |||||||||||||||
seq2  TATATATATATCGCGCGCGCGGAGGGTGTGGATATATATATGTGTGTG  398