BAC Information

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BAC

Clone NameB6Ng01-147P16
Chromosome2 (Build37)
Map Location 31,685,015 - 31,863,772
singlet/doubletdoublet
Overlap geneFibcd1, Lamc3, 2810003C17Rik, Nup214
Upstream genePrrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274
Downstream geneA130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147P16.bB6Ng01-147P16.g
ACCDH944706DH944707
length1,118736
definitionDH944706|Mus musculus domesticus DNA, BAC clone: B6Ng01-147P16, 5' end.DH944707|Mus musculus domesticus DNA, BAC clone: B6Ng01-147P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,862,649 - 31,863,772)(31,685,015 - 31,685,749)
sequence
gaattctcttttttttccattgttctaggtttatttgatgttttccttgg
catgacacttgggtggttggttccatcatccatatttcatttcacataat
aatattgaaataatcttacatttcacaaaatattgcaatgtacaccacag
acacataacacataaattatcctgtagcacagttatgtacaagatatgca
tatgaaaggaaataaaactgtaattcatgtaatgtatgtcaaatagccca
aagagttgtttgtgagctttgaaacctggggctgagaacatagcagaaca
gaccaggacatgcccgggcaggcccatcgcctccctatctcctacccctc
tgacctaagttaaatgttacagctgatgtttaaatggaccaatcatgtga
aaccgcgccaattcctcccccagccccactccttttctataaaaacccct
agcttccaagcctcgtggtcgaatccactgtctcctgttatgtgagatac
gtttcgacccggagctccgccattaaaaacctcttgttgttacatcaagg
tgttgtgttctattcgtgattcttgggtgcacgccgaatcgggagctgag
tgggggtttccccactgagttctttcacataatggacttagacactgcag
ccaggttatgactaactgggaactcgctggcctaggcatgtttgatatgg
gcgcgcagctcagcaatgcagcaggcttacaggataactgaagcctgcac
agttggcagtgtgtcttggagacagtgggactgtcacactagccatgtta
ccactacacaagtcccacctggcagcagggtggagctgtgaggtgcttct
gtgaatctccccacagatctgcttcctctctccaacacttgtaccttccc
actgaaaacatctgaaatgcttttccattattttatacgttgatacaaga
tcaaaatcattcaatgtaattcctcagaactgttatccgtggccactaag
gttaccgtataccttcttgatgttttgggcttgacaatgaaatgctagac
attgacatgtggtatagacaccagaattcatctgccttatccgagactac
tctccaccccttacaaaa
gaattcatttgggccccagaaggtacccaaccccatgggcctaccactca
catgtaccactgtctcctgactcagaccctcttacaacagatgggtcagc
aatacaaagtagccttcgtccagagcaagcctggccactccgcgaactga
gccctctctgtccaccatcaccagatcgctagactaagatcagggcctct
ccagtgaccctcaaccttgacacaagccagctcccttgtccttctgccct
ctcagctgagagcttaaaactctgcctcagtcccaaatggctccctgtgg
ctgatgctctagcaattaattgttcagtagcaattaattgcattgacttg
cctcagaaggcctggacgtcccctggccaggctggctgggtagcagaggc
aaacctcttgccctctctaggctaccctgccagcctttgggaatagaagg
ggcatggggcaatggcaggcagggaagtggtattcagactgcaaagagcc
tctggggctgagcccagtcctgcccactctggtctctagaaggcacactg
tgatggaggagcccgcccaggggcctgaggcccagcacagcatccagtcc
actggggaggaccatgcagtgttggtgcctgaagctgggtggttttgacg
gggaacctaatgaggatggatgggctgagagaggccagcaccttcccaaa
caacaattgaacatccaggaggggagagagagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_31862649_31863772
seq2: B6Ng01-147P16.b_47_1164 (reverse)

seq1  TTTTGTAA-GGGTTGAGAGTAGCTCGGGGATAAGGCAGTTGACTTCTGTG  49
      |||||||| |||| |||||||| ||  ||||||||||| ||| ||||| |
seq2  TTTTGTAAGGGGTGGAGAGTAG-TCTCGGATAAGGCAGATGAATTCTG-G  48

seq1  TGTCTATACCACATGTTCAATGTCTAGCATTTCAATTGTCAAAGCCCAAA  99
      ||||||||||||||| ||||||||||||||||| ||||||||  || |||
seq2  TGTCTATACCACATG-TCAATGTCTAGCATTTC-ATTGTCAAGCCCAAAA  96

seq1  CATCAAGAAGGTATACGTTACCCTTTGTTGCCACCGATAACATGTTCTTG  149
      ||||||||||||||||| || |||| || ||||| ||||||| |||| ||
seq2  CATCAAGAAGGTATACGGTAACCTTAGTGGCCACGGATAACA-GTTC-TG  144

seq1  AGGAATTACATTGAATGATTTTTATCTTGTATCAAACGTATAAAATAATT  199
      |||||||||||||||||||||| |||||||||| ||||||||||||||| 
seq2  AGGAATTACATTGAATGATTTTGATCTTGTATC-AACGTATAAAATAATG  193

seq1  GAAAAGCATTTCAGATGTTTTCAGTGGGAAGGTACAAGTGTTGGAGAGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCATTTCAGATGTTTTCAGTGGGAAGGTACAAGTGTTGGAGAGAG  243

seq1  GAAGCAGATCTGTGGGGAGATTCACAGAAGCACCTCACAGCTCCACCCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGATCTGTGGGGAGATTCACAGAAGCACCTCACAGCTCCACCCTG  293

seq1  CTGCCAGGTGGGACTTGTGTAGTGGTAACATGGCTAGTGTGACAGTCCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGGTGGGACTTGTGTAGTGGTAACATGGCTAGTGTGACAGTCCCA  343

seq1  CTGTCTCCAAGACACACTGCCAACTGTGCAGGCTTCAGTTATCCTGTAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCAAGACACACTGCCAACTGTGCAGGCTTCAGTTATCCTGTAAG  393

seq1  CCTGCTGCATTGCTGAGCTGCGCGCCCATATCAAACATGCCTAGGCCAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGCATTGCTGAGCTGCGCGCCCATATCAAACATGCCTAGGCCAGC  443

seq1  GAGTTCCCAGTTAGTCATAACCTGGCTGCAGTGTCTAAGTCCATTATGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCCAGTTAGTCATAACCTGGCTGCAGTGTCTAAGTCCATTATGTG  493

seq1  AAAGAACTCAGTGGGGAAACCCCCACTCAGCTCCCGATTCGGCGTGCACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTCAGTGGGGAAACCCCCACTCAGCTCCCGATTCGGCGTGCACC  543

seq1  CAAGAATCACGAATAGAACACAACACCTTGATGTAACAACAAGAGGTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATCACGAATAGAACACAACACCTTGATGTAACAACAAGAGGTTTT  593

seq1  TAATGGCGGAGCTCCGGGTCGAAACGTATCTCACATAACAGGAGACAGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCGGAGCTCCGGGTCGAAACGTATCTCACATAACAGGAGACAGTG  643

seq1  GATTCGACCACGAGGCTTGGAAGCTAGGGGTTTTTATAGAAAAGGAGTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGACCACGAGGCTTGGAAGCTAGGGGTTTTTATAGAAAAGGAGTGG  693

seq1  GGCTGGGGGAGGAATTGGCGCGGTTTCACATGATTGGTCCATTTAAACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGGAGGAATTGGCGCGGTTTCACATGATTGGTCCATTTAAACAT  743

seq1  CAGCTGTAACATTTAACTTAGGTCAGAGGGGTAGGAGATAGGGAGGCGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTAACATTTAACTTAGGTCAGAGGGGTAGGAGATAGGGAGGCGAT  793

seq1  GGGCCTGCCCGGGCATGTCCTGGTCTGTTCTGCTATGTTCTCAGCCCCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGCCCGGGCATGTCCTGGTCTGTTCTGCTATGTTCTCAGCCCCAG  843

seq1  GTTTCAAAGCTCACAAACAACTCTTTGGGCTATTTGACATACATTACATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAAGCTCACAAACAACTCTTTGGGCTATTTGACATACATTACATG  893

seq1  AATTACAGTTTTATTTCCTTTCATATGCATATCTTGTACATAACTGTGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAGTTTTATTTCCTTTCATATGCATATCTTGTACATAACTGTGCT  943

seq1  ACAGGATAATTTATGTGTTATGTGTCTGTGGTGTACATTGCAATATTTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATAATTTATGTGTTATGTGTCTGTGGTGTACATTGCAATATTTTG  993

seq1  TGAAATGTAAGATTATTTCAATATTATTATGTGAAATGAAATATGGATGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTAAGATTATTTCAATATTATTATGTGAAATGAAATATGGATGA  1043

seq1  TGGAACCAACCACCCAAGTGTCATGCCAAGGAAAACATCAAATAAACCTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACCAACCACCCAAGTGTCATGCCAAGGAAAACATCAAATAAACCTA  1093

seq1  GAACAATGGAAAAAAAAGAGAATTC  1124
      |||||||||||||||||||||||||
seq2  GAACAATGGAAAAAAAAGAGAATTC  1118

seq1: chr2_31685015_31685749
seq2: B6Ng01-147P16.g_69_804

seq1  GAATTCATTTGGGCCCCAGAAGGTACCCAACCCCATGGGCCTACCACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGGGCCCCAGAAGGTACCCAACCCCATGGGCCTACCACTCA  50

seq1  CATGTACCACTGTCTCCTGACTCAGACCCTCTTACAACAGATGGGTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACCACTGTCTCCTGACTCAGACCCTCTTACAACAGATGGGTCAGC  100

seq1  AATACAAAGTAGCCTTCGTCCAGAGCAAGCCTGGCCACTCCGCGAACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAAGTAGCCTTCGTCCAGAGCAAGCCTGGCCACTCCGCGAACTGA  150

seq1  GCCCTCTCTGTCCACCATCACCAGATCGCTAGACTAAGATCAGGGCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTCTGTCCACCATCACCAGATCGCTAGACTAAGATCAGGGCCTCT  200

seq1  CCAGTGACCCTCAACCTTGACACAAGCCAGCTCCCTTGTCCTTCTGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGACCCTCAACCTTGACACAAGCCAGCTCCCTTGTCCTTCTGCCCT  250

seq1  CTCAGCTGAGAGCTTAAAACTCTGCCTCAGTCCCAAATGGCTCCCTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTGAGAGCTTAAAACTCTGCCTCAGTCCCAAATGGCTCCCTGTGG  300

seq1  CTGATGCTCTAGCAATTAATTGTTCAGTAGCAATTAATTGCATTGACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCTCTAGCAATTAATTGTTCAGTAGCAATTAATTGCATTGACTTG  350

seq1  CCTCAGAAGGCCTGGACGTCCCCTGGCCAGGCTGGCTGGGTAGCAGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAAGGCCTGGACGTCCCCTGGCCAGGCTGGCTGGGTAGCAGAGGC  400

seq1  AAACCTCTTGCCCTCTCTAGGCTACCCTGCCAGCCTTTGGGAATAGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCTTGCCCTCTCTAGGCTACCCTGCCAGCCTTTGGGAATAGAAGG  450

seq1  GGCATGGGGCAATGGCAGGCAGGGAAGTGGTATTCAGACTGCAAAGAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGGGCAATGGCAGGCAGGGAAGTGGTATTCAGACTGCAAAGAGCC  500

seq1  TCTGGGGCTGAGCCCAGTCCTGCCCACTCTGGTCTCTAGAAGGCACACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGCTGAGCCCAGTCCTGCCCACTCTGGTCTCTAGAAGGCACACTG  550

seq1  TGATGGAGGAGCCCGCCCAGGGGCCTGAGGCCCAGCACAGCATCCAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAGGAGCCCGCCCAGGGGCCTGAGGCCCAGCACAGCATCCAGTCC  600

seq1  ACTGGGGAGGACCATGCAGTGTTGGTGCCTGAAGCTGGGTGGTTTTGACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGAGGACCATGCAGTGTTGGTGCCTGAAGCTGGGTGGTTTTGACG  650

seq1  GGGAACCTAATGAGGATGGATGGGCTGAGAGAGGCCAGCACCTTCCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCTAATGAGGATGGATGGGCTGAGAGAGGCCAGCACCTTCCCAAA  700

seq1  CAACAATTGAACATCCAGGA-GGGAGAGAGAGAGAG  735
      |||||||||||||||||||| |||||||||||||||
seq2  CAACAATTGAACATCCAGGAGGGGAGAGAGAGAGAG  736