BAC Information

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BAC

Clone NameB6Ng01-149O16
Chromosome2 (Build37)
Map Location 44,756,601 - 44,900,779
singlet/doubletdoublet
Overlap geneZeb2
Upstream geneArhgap15, Gtdc1
Downstream geneLOC100042661, LOC100041337, LOC666604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149O16.bB6Ng01-149O16.g
ACCDH946126DH946127
length1,0291,202
definitionDH946126|Mus musculus domesticus DNA, BAC clone: B6Ng01-149O16, 5' end.DH946127|Mus musculus domesticus DNA, BAC clone: B6Ng01-149O16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,899,756 - 44,900,779)(44,756,601 - 44,757,822)
sequence
gaattcccttatcaggatttacttgaaaggaatatgtcttattacagaag
gagaatgccttgaggactgtgggaaagattaaaggcttttgtcagtggtt
ggggttgggaccaggtttcctgtgcagctaccccccccccccattcccca
cgtgaatgtgtgcctctccccctcccctctctttctctttaaggggaaga
gtaagcccttctcgctgcctggtggtgtcagattaaataccgagatggcg
acaggaaaaaggctggaaggaaaaacaaaagacaggggggtgagagttat
caggttggcgacggaactgcaggcttgtcggactccaatttacagaaatc
caaacagattttagttgacacgatctgcaatcattaccgccggagcaaag
ctaattaagaaattagctttcctgattgcctgctctcacagtgatgagta
gttgaataatgttgtatggctgaaatgttctaaaaccagacagtttaaca
agtgtttagacttttgtggtgacgcagtatttacttatctgtaatatctc
tgcggcgacggtacttgttccctctccttcctttgcctaggttcaccctc
tctaggccttaagtcagggcccctcccccactcacctcagcaatgtacag
atgcagatcatcacacacatttgtggatgtgttacagaaaagttattaca
aacttgcagcacattgaaggaaaaaaaaactttttttcctacctagttat
gcattttttttccacatgaaaatataaaggtcaaaagaagtatatgatgc
caaagtcctagagtaccactaaatacagatacataaacatccacaggcgt
ggcaaaccacagtttgggagcccagaaatgtcagaagggaagttagcttg
agagcaagctcacatttggcacaactagtcttttcgaggtatactatttc
atcttttctgcagcctgtcaaacgcgtatggtgttacattatttagagga
aaaaaattactttatttaaaaaaatagac
gaattcaaagaagcctggtctatataataagttccaggacagccagagct
acataatatggccctgtcttaagagagagacagagagagtgtgcacatga
gcacaccagtagagcatacatggaaggcaagccagtccttcctccacagt
tactcacattccttccctgatagcactctatgatcattgtgacctgaaag
tataagacaatctctttcctctccaagttgcttttaatcatgatgtttat
catagcaacagaaaagcaaactaatacaatatatcttcaagaaaattaac
agtgagttctcatgttatttttctaaatagtaatttcaaatataacagat
cttataacctgaatacgaaattaaaccttattcataaactgaagacctag
acatagaaagcttcttttcaaaaccacatgtgccaccaataatcacttct
ttttggagcaaatataagtcttgtatgtcaaggcccttaaactgtaacct
ccaatcactaacaaagacctctggaggccataccgtttttccagaaaaca
tgcctttttatcttttcagtgtcatcataagcacaccatgaatcctcatg
aaatgctgttctgaaagaatgacctcagcaaccaacagcagatataaata
agtacaagacagaacaaaattaagcaatgaaaagtgtcattatctgaagg
aatatttgaaaattggctagctaaccaagcagagctttgctaaataaagc
aaatacatttgctttgtctaatacacctagataaaggtttatgagaactt
aaaaagtcagtcacatagccatgagctcctcctactctacactggagtcc
atctccacccaatatacagttaatgtttaatatctacatataagacattg
agagcttaagttcactgcatgccacttcaacagtgcctatcctccattta
aaaacaaacctgtcctccccagaagtgaaagtagaggacattcataaaag
ttgaaagagaaagtgtgaattaaaagagaatgtgtgaacactatcttagg
actgctcattctctacggtgtgaagaataaatggaggttaacttttattc
ttccattctactctttcgtgaatacccatccaaagtgtcataacgaacaa
tcctgcagcaggtagcatactccaaagctcgtagtccattctataggacc
ag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_44899756_44900779
seq2: B6Ng01-149O16.b_49_1077 (reverse)

seq1  GTCTAATTTTTT-AATAAAGTTATTTTTTTTCCTCTAAATAATGT-ACA-  47
      ||||| |||||| ||||||| || ||||||||||||||||||||| ||| 
seq2  GTCTATTTTTTTAAATAAAG-TAATTTTTTTCCTCTAAATAATGTAACAC  49

seq1  CATACGCGTTTGACAGGCTGCAGAAAAGATGAAATAGTATACCTCGGAAA  97
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATACGCGTTTGACAGGCTGCAGAAAAGATGAAATAGTATACCTCGAAAA  99

seq1  GACTAGTTGTGCCAAATGTGAGCTTGCTCTC-AGCTAACTTCCCTTCTGA  146
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GACTAGTTGTGCCAAATGTGAGCTTGCTCTCAAGCTAACTTCCCTTCTGA  149

seq1  CATTTCTGGGCTCCCAAACTGTGGTTTGCCACGCCTGTGGATG-TTATGT  195
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATTTCTGGGCTCCCAAACTGTGGTTTGCCACGCCTGTGGATGTTTATGT  199

seq1  ATCTGTATTTAGTGGTACTCTAGGACTTTGGCATCATATACTTCTTTTGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTATTTAGTGGTACTCTAGGACTTTGGCATCATATACTTCTTTTGA  249

seq1  CC-TTATATTTTCATGTGGAAAAAAAATGCATAACTAGGTAGGAAAAAAA  294
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATATTTTCATGTGGAAAAAAAATGCATAACTAGGTAGGAAAAAAA  299

seq1  GTTTTTTTTTCCTTCAATGTGCTGCAAGTTTGTAATAACTTTTCTGTAAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTCCTTCAATGTGCTGCAAGTTTGTAATAACTTTTCTGTAAC  349

seq1  ACATCCACAAATGTGTGTGATGATCTGCATCTGTACATTGCTGAGGTGAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCACAAATGTGTGTGATGATCTGCATCTGTACATTGCTGAGGTGAG  399

seq1  TGGGGGAGGGGCCCTGACTTAAGGCCTAGAGAGGGTGAACCTAGGCAAAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGGGGCCCTGACTTAAGGCCTAGAGAGGGTGAACCTAGGCAAAG  449

seq1  GAAGGAGAGGGAACAAGTACCGTCGCCGCAGAGATATTACAGATAAGTAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGAGGGAACAAGTACCGTCGCCGCAGAGATATTACAGATAAGTAA  499

seq1  ATACTGCGTCACCACAAAAGTCTAAACACTTGTTAAACTGTCTGGTTTTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCGTCACCACAAAAGTCTAAACACTTGTTAAACTGTCTGGTTTTA  549

seq1  GAACATTTCAGCCATACAACATTATTCAACTACTCATCACTGTGAGAGCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTCAGCCATACAACATTATTCAACTACTCATCACTGTGAGAGCA  599

seq1  GGCAATCAGGAAAGCTAATTTCTTAATTAGCTTTGCTCCGGCGGTAATGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCAGGAAAGCTAATTTCTTAATTAGCTTTGCTCCGGCGGTAATGA  649

seq1  TTGCAGATCGTGTCAACTAAAATCTGTTTGGATTTCTGTAAATTGGAGTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGATCGTGTCAACTAAAATCTGTTTGGATTTCTGTAAATTGGAGTC  699

seq1  CGACAAGCCTGCAGTTCCGTCGCCAACCTGATAACTCTCACCCCCCTGTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAAGCCTGCAGTTCCGTCGCCAACCTGATAACTCTCACCCCCCTGTC  749

seq1  TTTTGTTTTTCCTTCCAGCCTTTTTCCTGTCGCCATCTCGGTATTTAATC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTCCTTCCAGCCTTTTTCCTGTCGCCATCTCGGTATTTAATC  799

seq1  TGACACCACCAGGCAGCGAGAAGGGCTTACTCTTCCCCTTAAAGAGAAAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCACCAGGCAGCGAGAAGGGCTTACTCTTCCCCTTAAAGAGAAAG  849

seq1  AGAGGGGAGGGGGAGAGGCACACATTCACGTGGGGAATGGGGGGGGGGGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGAGGGGGAGAGGCACACATTCACGTGGGGAATGGGGGGGGGGGG  899

seq1  TAGCTGCACAGGAAACCTGGTCCCAACCCCAACCACTGACAAAAGCCTTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCACAGGAAACCTGGTCCCAACCCCAACCACTGACAAAAGCCTTT  949

seq1  AATCTTTCCCACAGTCCTCAAGGCATTCTCCTTCTGTAATAAGACATATT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCCCACAGTCCTCAAGGCATTCTCCTTCTGTAATAAGACATATT  999

seq1  CCTTTCAAGTAAATCCTGATAAGGGAATTC  1024
      ||||||||||||||||||||||||||||||
seq2  CCTTTCAAGTAAATCCTGATAAGGGAATTC  1029

seq1: chr2_44756601_44757822
seq2: B6Ng01-149O16.g_69_1270

seq1  GAATTCAAAGAAGCCTGGTCTATATAATAAGTTCCAGGACAGCCAGAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAAGCCTGGTCTATATAATAAGTTCCAGGACAGCCAGAGCT  50

seq1  ACATAATATGGCCCTGTCTTAAGAGAGAGACAGAGAGAGTGTGCACATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATATGGCCCTGTCTTAAGAGAGAGACAGAGAGAGTGTGCACATGA  100

seq1  GCACACCAGTAGAGCATACATGGAAGGCAAGCCAGTCCTTCCTCCACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCAGTAGAGCATACATGGAAGGCAAGCCAGTCCTTCCTCCACAGT  150

seq1  TACTCACATTCCTTCCCTGATAGCACTCTATGATCATTGTGACCTGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACATTCCTTCCCTGATAGCACTCTATGATCATTGTGACCTGAAAG  200

seq1  TATAAGACAATCTCTTTCCTCTCCAAGTTGCTTTTAATCATGATGTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGACAATCTCTTTCCTCTCCAAGTTGCTTTTAATCATGATGTTTAT  250

seq1  CATAGCAACAGAAAAGCAAACTAATACAATATATCTTCAAGAAAATTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAACAGAAAAGCAAACTAATACAATATATCTTCAAGAAAATTAAC  300

seq1  AGTGAGTTCTCATGTTATTTTTCTAAATAGTAATTTCAAATATAACAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTCTCATGTTATTTTTCTAAATAGTAATTTCAAATATAACAGAT  350

seq1  CTTATAACCTGAATACGAAATTAAACCTTATTCATAAACTGAAGACCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAACCTGAATACGAAATTAAACCTTATTCATAAACTGAAGACCTAG  400

seq1  ACATAGAAAGCTTCTTTTCAAAACCACATGTGCCACCAATAATCACTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAAAGCTTCTTTTCAAAACCACATGTGCCACCAATAATCACTTCT  450

seq1  TTTTGGAGCAAATATAAGTCTTGTATGTCAAGGCCCTTAAACTGTAACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGCAAATATAAGTCTTGTATGTCAAGGCCCTTAAACTGTAACCT  500

seq1  CCAATCACTAACAAAGACCTCTGGAGGCCATACCGTTTTTCCAGAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCACTAACAAAGACCTCTGGAGGCCATACCGTTTTTCCAGAAAACA  550

seq1  TGCCTTTTTATCTTTTCAGTGTCATCATAAGCACACCATGAATCCTCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTTTATCTTTTCAGTGTCATCATAAGCACACCATGAATCCTCATG  600

seq1  AAATGCTGTTCTGAAAGAATGACCTCAGCAACCAACAGCAGATATAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGTTCTGAAAGAATGACCTCAGCAACCAACAGCAGATATAAATA  650

seq1  AGTACAAGACAGAACAAAATTAAGCAATGAAAAGTGTCATTATCTGAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAGACAGAACAAAATTAAGCAATGAAAAGTGTCATTATCTGAAGG  700

seq1  AATATTTGAAAATTGGCTAGCTAACCAAGCAGAGCTTTGCTAAATAAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTGAAAATTGGCTAGCTAACCAAGCAGAGCTTTGCTAAATAAAGC  750

seq1  AAATACATTTGCTTTGTCTAATACACCTAGATAAAGGTTTATGAGAACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATTTGCTTTGTCTAATACACCTAGATAAAGGTTTATGAGAACTT  800

seq1  AAAAAGTCAGTCACATAGCCATGAGCTCCTCCTACTCTACACTGGAGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTCAGTCACATAGCCATGAGCTCCTCCTACTCTACACTGGAGTCC  850

seq1  ATCTCCACCCAATATACAGTTAATGTTTAATATCTACATATAAGACATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCACCCAATATACAGTTAATGTTTAATATCTACATATAAGACATTG  900

seq1  AGAGCTTAAGTTCACTGCATGCCACTTCAACAGTGCCTATCCTCCATTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTAAGTTCACTGCATGCCACTTCAACAGTGCCTATCCTCCATTTA  950

seq1  AAAACAAACCTGTCCTCCCCAAGAAGTGAAAGTAGAGGACATTCATAAAA  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAACAAACCTGTCCTCCCC-AGAAGTGAAAGTAGAGGACATTCATAAAA  999

seq1  GTTGAAAGAGAAAGGTGTGAATTAAAAGAGAATGTGTGGAACACTATCTT  1050
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  GTTGAAAGAGAAA-GTGTGAATTAAAAGAGAATGTGT-GAACACTATCTT  1047

seq1  A-GACTGCTCATTTCTCCTTACTGTGTGAAGATTAAAT-GAGTGTACTTT  1098
      | ||||||||| |||||  ||| ||||||||| ||||| |||  ||  ||
seq2  AGGACTGCTCA-TTCTC--TACGGTGTGAAGAATAAATGGAGGTTAACTT  1094

seq1  TTATTTCTTCCAATTCTACTCTTCTGTAGATTTACACCCATTCACAAAAG  1148
      ||| ||||||| |||||||||||  ||  ||    ||||||   | ||||
seq2  TTA-TTCTTCC-ATTCTACTCTTTCGTGAAT----ACCCAT---CCAAAG  1135

seq1  TGTCATTAACAGAAACCAAATACCTGCAAGCAGGTAGCATACTTTCACAA  1198
      ||||| |||| |||  |||   ||||| ||||||||||||||  ||  ||
seq2  TGTCA-TAAC-GAA--CAA--TCCTGC-AGCAGGTAGCATAC--TCCAAA  1176

seq1  ACTCTTAGTCCATTC-ATAGG-CCAG  1222
       ||| |||||||||| ||||| ||||
seq2  GCTCGTAGTCCATTCTATAGGACCAG  1202