BAC Information

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BAC

Clone NameB6Ng01-150D12
Chromosome2 (Build37)
Map Location 130,787,021 - 130,913,595
singlet/doubletdoublet
Overlap geneAtrn, LOC100043768, Gfra4, Adam33, Siglec1
Upstream geneTgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316
Downstream geneLOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d, Lamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150D12.bB6Ng01-150D12.g
ACCDH946356DH946357
length1,1221,145
definitionDH946356|Mus musculus domesticus DNA, BAC clone: B6Ng01-150D12, 5' end.DH946357|Mus musculus domesticus DNA, BAC clone: B6Ng01-150D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,912,468 - 130,913,595)(130,787,021 - 130,788,181)
sequence
gaattcttctgtctctctctgctccaaccagtgctgggcctgcattcagg
agcttcggtagttgtacaaatgctcacacccggtacggtaccgtgttctt
accccctgaactgccccccagccctcactctggttccgacttatgttttc
ctcacgcgtcttttcattggtttgttgccttgcatttcttcaatgagaag
tgtctattcaagtcctttgcccattttcctagatgggttgttttatttca
gaggaggctatggtactgtcagaattcttgacatgttctggatactagtc
ttcaataaatgattctcaaatattttctctcattctttggctgtcttttt
catttctctgcacagtttttgtttgtttgtttgtttttgtttgtttgctt
ggttttttttttttttttttggctcacacaaaaatcaagtccctcttacc
tacttcccccttttcttttttgaggcacggtcttcgtagcttgccctgac
gagcgagccttaaacacaggatcctcccactacagcttcccgaacgctag
aatcacgaagcattaccactgagcttcgcttctaagtcaggaaagcactg
cgtggtccaaagccatggagactgacatctgggttgttttctaggtgttt
cttggactgctgtgtctgccgcctgtggtgttccttcctgctgtggcacc
ctttggcacagggcttgctccttgtgcatggtatacaataagcatgtttg
tgggtgtgagtgtatggcgacctgacccaggaaagtttccttgacacctc
tctagcctgactctggaccacaacacccttgtcataatcactgagatccc
tgtaggtctggggctctgcactgctgtggaccacaaattcccaggcctaa
gtctttcagaaatgggtgggatgctcatggctgcccagaagagggaaaac
ataaagctttctctgctgtggccacaaggactcagcccagagggaagtta
caggattatgcagcatctgaaagtgagtagatttctgtgagcaagatcat
ttatggtggggggtgaactggcagtgagggagccagggagccaaccagat
tagctaaagtagtctatgaaac
gaattcttaagtggaattatggagccatagagaatgaacattttagggct
tttaatatagtttcccgaaattttaacagattttcatgattgttaaagga
agtggcttacgtatagggggaaatcaagtattgcacatttgaatctaaag
ttataaagtaattacatttaaattggcaaataagtattcttttaaaacta
accttatatttattatttctaaataaactcaaaaggaccattcttaagga
cagccgatttttccgttacttgcatacagctgtgatagtgagtggaacca
tgctggtgtttggagggaacacacacaatgacacttccatgagccacggt
gccaaatgcttctcctcagacttcatggcttatgacattggtaagctttc
caaagatgttttagcttcaggaatattttctttgctgatggaaagatcac
tatgttaaaataattgcaccatttaaaagaagtccaggtggtagaatttg
catttaatttgagtagggttacacatctattgaaaagcattattttggat
taaactacattaaattctttgtgaaatcactcttcttaattgctttaatt
ctttttttaggttgagttaattggtatcttctttcttataagtgccttac
atagtagtggtggtagttgtaaccaccagtgttatgttaagtttgatggg
atatgctgtttcctagaaacctggttttacacatgctgttgatgtcaata
tacatgtggccagaagagggcagtgtctgtttattcctggaaaataaaca
tcagctgctctgttgtgtaaatatcacccatgtgatgttctttctgttta
tttgtctttgcattttgagacagcctcactatgtagtctaattggctgaa
gctcagtttatagatcaaggtgaccttgaacttagagaaatcctcctgcc
tcttctgagtgctagattaaagatgtgtactacgaatgaaaaaaaaaatg
tgtactactacacctgactagagattcattttaaattattctattgggat
aaatgctcagaatacacctacatctatgtttagtgttaaatttatatatc
ctagtgttattcagtataatacgatctgcttgccgcagccttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_130912468_130913595
seq2: B6Ng01-150D12.b_46_1167 (reverse)

seq1  GTTTCATAGACTTACTCTAGGCCTAATCTTGTCTGCTCCCTGGCTCCCTC  50
      ||||||||||| |||| |||  ||||||| ||  ||||||||||||||||
seq2  GTTTCATAGAC-TACTTTAG--CTAATCTGGTTGGCTCCCTGGCTCCCTC  47

seq1  ACTGCCCAGTTCCACCCCCACCATAAATGATCTTTGCTCACAGAAATCTT  100
      |||| |||||||  |||||||||||||||||| ||||||||||||||| |
seq2  ACTG-CCAGTTCACCCCCCACCATAAATGATC-TTGCTCACAGAAATC-T  94

seq1  ACTCAACCTTCAGGATGCTGCATAAATCTGTAACTTCCCCTCTGGGCTGA  150
      |||| || |||| ||||||||||||  ||||||||| |||||||||||||
seq2  ACTC-ACTTTCA-GATGCTGCATAATCCTGTAACTT-CCCTCTGGGCTGA  141

seq1  GTCCTTGTGGCCACAGCAGAGAAAGCTTTATGTTTTCCCTCTTCTTGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTCCTTGTGGCCACAGCAGAGAAAGCTTTATGTTTTCCCTCTTCTGGGCA  191

seq1  GCCATGGGCAT-CCACCCATTTCTG-AAGACCTAGGCCTGGGAATTTGTG  248
      |||||| |||| ||||||||||||| ||||| ||||||||||||||||||
seq2  GCCATGAGCATCCCACCCATTTCTGAAAGACTTAGGCCTGGGAATTTGTG  241

seq1  GTCCACAGCAGTGCAGAGCCCCAGACCTACAGGGATCTCAGTGATTATGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAGCAGTGCAGAGCCCCAGACCTACAGGGATCTCAGTGATTATGA  291

seq1  CAAGGGTG-TGTGGTCCAGAGTCAGGCTAGAGAGGTGTCAAGGAAACTTT  347
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTGTTGTGGTCCAGAGTCAGGCTAGAGAGGTGTCAAGGAAACTTT  341

seq1  CCTGGGTCAGGTCGCCATACACTCACACCCACAAACATGCTTATTGTATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTCAGGTCGCCATACACTCACACCCACAAACATGCTTATTGTATA  391

seq1  CCATGCACAAGGAGCAAGCCCTGTGCCAAAGGGTGCCACAGCAGGAAGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCACAAGGAGCAAGCCCTGTGCCAAAGGGTGCCACAGCAGGAAGGA  441

seq1  ACACCACAGGCGGCAGACACAGCAGTCCAAGAAACACCTAGAAAACAACC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACAGGCGGCAGACACAGCAGTCCAAGAAACACCTAGAAAACAACC  491

seq1  CAGATGTCAGTCTCCATGGCTTTGGACCACGCAGTGCTTTCCTGACTTAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTCAGTCTCCATGGCTTTGGACCACGCAGTGCTTTCCTGACTTAG  541

seq1  AAGCGAAGCTCAGTGGTAATGCTTCGTGATTCTAGCGTTCGGGAAGCTGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGAAGCTCAGTGGTAATGCTTCGTGATTCTAGCGTTCGGGAAGCTGT  591

seq1  AGTGGGAGGATCCTGTGTTTAAGGCTCGCTCGTCAGGGCAAGCTACGAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAGGATCCTGTGTTTAAGGCTCGCTCGTCAGGGCAAGCTACGAAG  641

seq1  ACCGTGCCTCAAAAAAGAAAAGGGGGAAGTAGGTAAGAGGGACTTGATTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGCCTCAAAAAAGAAAAGGGGGAAGTAGGTAAGAGGGACTTGATTT  691

seq1  TTGTGTGAGCCAAAAAAAAAAAAAAAAAACCAAGCAAACAAACAAAAACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGAGCCAAAAAAAAAAAAAAAAAACCAAGCAAACAAACAAAAACA  741

seq1  AACAAACAAACAAAAACTGTGCAGAGAAATGAAAAAGACAGCCAAAGAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAAAACTGTGCAGAGAAATGAAAAAGACAGCCAAAGAAT  791

seq1  GAGAGAAAATATTTGAGAATCATTTATTGAAGACTAGTATCCAGAACATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAATATTTGAGAATCATTTATTGAAGACTAGTATCCAGAACATG  841

seq1  TCAAGAATTCTGACAGTACCATAGCCTCCTCTGAAATAAAACAACCCATC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAATTCTGACAGTACCATAGCCTCCTCTGAAATAAAACAACCCATC  891

seq1  TAGGAAAATGGGCAAAGGACTTGAATAGACACTTCTCATTGAAGAAATGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAATGGGCAAAGGACTTGAATAGACACTTCTCATTGAAGAAATGC  941

seq1  AAGGCAACAAACCAATGAAAAGACGCGTGAGGAAAACATAAGTCGGAACC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAACAAACCAATGAAAAGACGCGTGAGGAAAACATAAGTCGGAACC  991

seq1  AGAGTGAGGGCTGGGGGGCAGTTCAGGGGGTAAGAACACGGTACCGTACC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGGGCTGGGGGGCAGTTCAGGGGGTAAGAACACGGTACCGTACC  1041

seq1  GGGTGTGAGCATTTGTACAACTACCGAAGCTCCTGAATGCAGGCCCAGCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGAGCATTTGTACAACTACCGAAGCTCCTGAATGCAGGCCCAGCA  1091

seq1  CTGGTTGGAGCAGAGAGAGACAGAAGAATTC  1128
      |||||||||||||||||||||||||||||||
seq2  CTGGTTGGAGCAGAGAGAGACAGAAGAATTC  1122

seq1: chr2_130787021_130788181
seq2: B6Ng01-150D12.g_68_1212

seq1  GAATTCTTAAGTGGAATTATGGAGCCATAGAGAATGAACATTTTAGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGTGGAATTATGGAGCCATAGAGAATGAACATTTTAGGGCT  50

seq1  TTTAATATAGTTTCCCGAAATTTTAACAGATTTTCATGATTGTTAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATAGTTTCCCGAAATTTTAACAGATTTTCATGATTGTTAAAGGA  100

seq1  AGTGGCTTACGTATAGGGGGAAATCAAGTATTGCACATTTGAATCTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTTACGTATAGGGGGAAATCAAGTATTGCACATTTGAATCTAAAG  150

seq1  TTATAAAGTAATTACATTTAAATTGGCAAATAAGTATTCTTTTAAAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGTAATTACATTTAAATTGGCAAATAAGTATTCTTTTAAAACTA  200

seq1  ACCTTATATTTATTATTTCTAAATAAACTCAAAAGGACCATTCTTAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATATTTATTATTTCTAAATAAACTCAAAAGGACCATTCTTAAGGA  250

seq1  CAGCCGATTTTTCCGTTACTTGCATACAGCTGTGATAGTGAGTGGAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGATTTTTCCGTTACTTGCATACAGCTGTGATAGTGAGTGGAACCA  300

seq1  TGCTGGTGTTTGGAGGGAACACACACAATGACACTTCCATGAGCCACGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTGTTTGGAGGGAACACACACAATGACACTTCCATGAGCCACGGT  350

seq1  GCCAAATGCTTCTCCTCAGACTTCATGGCTTATGACATTGGTAAGCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATGCTTCTCCTCAGACTTCATGGCTTATGACATTGGTAAGCTTTC  400

seq1  CAAAGATGTTTTAGCTTCAGGAATATTTTCTTTGCTGATGGAAAGATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATGTTTTAGCTTCAGGAATATTTTCTTTGCTGATGGAAAGATCAC  450

seq1  TATGTTAAAATAATTGCACCATTTAAAAGAAGTCCAGGTGGTAGAATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAAAATAATTGCACCATTTAAAAGAAGTCCAGGTGGTAGAATTTG  500

seq1  CATTTAATTTGAGTAGGGTTACACATCTATTGAAAAGCATTATTTTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATTTGAGTAGGGTTACACATCTATTGAAAAGCATTATTTTGGAT  550

seq1  TAAACTACATTAAATTCTTTGTGAAATCACTCTTCTTAATTGCTTTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTACATTAAATTCTTTGTGAAATCACTCTTCTTAATTGCTTTAATT  600

seq1  CTTTTTTTAGGTTGAGTTAATTGGTATCTTCTTTCTTATAAGTGCCTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTAGGTTGAGTTAATTGGTATCTTCTTTCTTATAAGTGCCTTAC  650

seq1  ATAGTAGTGGTGGTAGTTGTAACCACCAGTGTTATGTTAAGTTTGATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGTGGTGGTAGTTGTAACCACCAGTGTTATGTTAAGTTTGATGGG  700

seq1  ATATGCTGTTTCCTAGAAACCTGGTTTTACACATGCTGTTGATGTCAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTGTTTCCTAGAAACCTGGTTTTACACATGCTGTTGATGTCAATA  750

seq1  TACATGTGGCCAGAAGAGGGCAGTGTCTGTTTATTCCTGGAAAATAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTGGCCAGAAGAGGGCAGTGTCTGTTTATTCCTGGAAAATAAACA  800

seq1  TCAGCTGCTCTGTTGTGTAAATATCACCCATGTGATGTTCTTTCTGTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGCTCTGTTGTGTAAATATCACCCATGTGATGTTCTTTCTGTTTA  850

seq1  TTTGTCTTTGCATTTTGAGACAGCCTCACTATGTAGTCTAATTGGCTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTTGCATTTTGAGACAGCCTCACTATGTAGTCTAATTGGCTGAA  900

seq1  GCTCAGTATATAGATCAAGGTGACCTTGAACTTAGAGAAATCCTCCTGCC  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTTTATAGATCAAGGTGACCTTGAACTTAGAGAAATCCTCCTGCC  950

seq1  TCTTCTGAGTGCTAAGATTAAAGATGTGTACTACGAATGAAAAAAAAAAA  1000
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  TCTTCTGAGTGCT-AGATTAAAGATGTGTACTACGAATG-AAAAAAAAAA  998

seq1  TGTGTACTACCACACCTGACTAGAGATTCATTTTAAAAATTATTCTTATT  1050
      |||||||||| |||||||||||||||||||||||  ||||||||| ||||
seq2  TGTGTACTACTACACCTGACTAGAGATTCATTTT--AAATTATTC-TATT  1045

seq1  GTGATAAAATGCTCAGAATAACACTCACCATCTTAATGTTTTAAGTAGTT  1100
      | ||| ||||||||||||| |||| |  |||||  ||||||  |||   |
seq2  GGGAT-AAATGCTCAGAAT-ACAC-CTACATCT--ATGTTT--AGT--GT  1086

seq1  TAGATTTAAATATATTCCTAGTGTTATTCATGTTATAATACCATCTGCTT  1150
      || ||||| |||   |||||||||||||||   |||||||| ||||||||
seq2  TAAATTTATATA---TCCTAGTGTTATTCA--GTATAATACGATCTGCTT  1131

seq1  GCC---GACTTCTT  1161
      |||   | ||||||
seq2  GCCGCAGCCTTCTT  1145